Wall clock time and date at job start Wed Apr 1 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 H 1.09001 * 109.87601 * 55.80473 * 3 2 1 5 5 C 1.54330 * 109.88238 * 294.79261 * 3 2 1 6 6 H 1.09007 * 110.71665 * 336.77567 * 5 3 2 7 7 N 1.46498 * 110.72039 * 99.86944 * 5 3 2 8 8 C 1.34777 * 120.00118 * 204.99778 * 7 5 3 9 9 O 1.21280 * 119.99563 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99992 * 179.72820 * 8 7 5 11 11 H 1.08999 * 109.69806 * 300.27608 * 10 8 7 12 12 C 1.53409 * 109.69929 * 60.83644 * 10 8 7 13 13 O 1.42829 * 108.37406 * 184.41554 * 12 10 8 14 14 C 1.35849 * 117.86578 * 310.81979 * 13 12 10 15 15 C 1.39144 * 118.50255 * 197.16849 * 14 13 12 16 16 C 1.37970 * 120.21413 * 180.15912 * 15 14 13 17 17 C 1.38290 * 119.96014 * 0.04798 * 16 15 14 18 18 C 1.38106 * 119.98118 * 359.92087 * 17 16 15 19 19 C 1.38369 * 121.80194 * 17.23594 * 14 13 12 20 20 C 1.50798 * 121.41845 * 359.51648 * 19 14 13 21 21 C 1.55153 * 102.93985 * 218.23665 * 5 3 2 22 22 C 1.54908 * 101.58713 * 35.50116 * 21 5 3 23 23 N 1.47019 * 110.01166 * 176.90838 * 3 2 1 24 24 C 1.36938 * 125.64455 * 298.39226 * 23 3 2 25 25 H 1.07998 * 120.00278 * 345.37231 * 24 23 3 26 26 C 1.38813 * 119.99554 * 165.36807 * 24 23 3 27 27 N 1.31625 * 120.00655 * 0.02562 * 26 24 23 28 28 Si 1.86807 * 119.99937 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.46947 * 0.02562 * 28 26 24 30 30 H 1.48502 * 109.46763 * 120.00246 * 28 26 24 31 31 H 1.48497 * 109.47093 * 240.00570 * 28 26 24 32 32 H 1.09000 * 109.47475 * 185.58496 * 1 2 3 33 33 H 1.09008 * 109.47141 * 305.58495 * 1 2 3 34 34 H 1.08998 * 109.47058 * 65.58185 * 1 2 3 35 35 H 1.08996 * 109.46865 * 239.99972 * 2 1 3 36 36 H 1.09004 * 109.47092 * 119.99724 * 2 1 3 37 37 H 0.97002 * 119.99945 * 25.00837 * 7 5 3 38 38 H 1.08992 * 109.68579 * 304.14427 * 12 10 8 39 39 H 1.09006 * 109.67967 * 64.66296 * 12 10 8 40 40 H 1.07997 * 119.89208 * 0.19093 * 15 14 13 41 41 H 1.08000 * 120.02241 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.01446 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.84327 * 179.97438 * 18 17 16 44 44 H 1.08995 * 109.40734 * 257.74219 * 20 19 14 45 45 H 1.08998 * 109.46840 * 137.86249 * 20 19 14 46 46 H 1.09004 * 111.00117 * 153.57351 * 21 5 3 47 47 H 1.09000 * 111.00451 * 277.42156 * 21 5 3 48 48 H 1.08990 * 110.37084 * 204.14953 * 22 21 5 49 49 H 1.09007 * 110.45933 * 81.87022 * 22 21 5 50 50 H 0.96998 * 120.00340 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9839 0.8479 5 6 1.6412 2.1402 -1.3175 6 1 1.4660 1.4067 -2.1046 7 7 0.4570 2.9801 -1.1215 8 6 -0.3466 3.2662 -2.1649 9 8 -0.0895 2.8279 -3.2662 10 6 -1.5680 4.1251 -1.9620 11 1 -2.2326 3.6536 -1.2381 12 6 -1.1477 5.5098 -1.4527 13 8 -2.3279 6.2637 -1.1722 14 6 -3.2968 6.3041 -2.1236 15 6 -4.2685 7.2965 -2.0401 16 6 -5.2707 7.3682 -2.9857 17 6 -5.3114 6.4510 -4.0198 18 6 -4.3482 5.4650 -4.1061 19 6 -3.3384 5.3895 -3.1611 20 6 -2.3001 4.3040 -3.2943 21 6 2.8844 3.0106 -1.6399 22 6 4.0369 2.1043 -1.1400 23 7 3.5082 1.4570 0.0745 24 6 4.2602 0.9534 1.1023 25 1 3.7934 0.7150 2.0465 26 6 5.6224 0.7494 0.9303 27 7 6.1915 1.0405 -0.2203 28 14 6.6484 0.0632 2.3325 29 1 5.7775 -0.1786 3.5108 30 1 7.2734 -1.2155 1.9087 31 1 7.7096 1.0376 2.6924 32 1 -0.3634 -1.0228 0.1000 33 1 -0.3634 0.5981 0.8358 34 1 -0.3633 0.4248 -0.9357 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 0.2514 3.3304 -0.2406 38 1 -0.5557 5.4026 -0.5439 39 1 -0.5592 6.0187 -2.2162 40 1 -4.2378 8.0132 -1.2329 41 1 -6.0231 8.1400 -2.9181 42 1 -6.0957 6.5061 -4.7602 43 1 -4.3824 4.7496 -4.9144 44 1 -1.5837 4.5811 -4.0676 45 1 -2.7863 3.3681 -3.5696 46 1 2.9670 3.1922 -2.7115 47 1 2.8579 3.9496 -1.0870 48 1 4.9142 2.7044 -0.8988 49 1 4.2857 1.3549 -1.8915 50 1 7.1435 0.8982 -0.3403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087649577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:20 Heat of formation + Delta-G solvation = -52.460004 kcal Electronic energy + Delta-G solvation = -30504.800931 eV Core-core repulsion = 26496.416704 eV Total energy + Delta-G solvation = -4008.384227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.01697 -40.85493 -39.34289 -38.36970 -35.67530 -35.23457 -34.30796 -33.50877 -31.86471 -31.16916 -30.68263 -28.17065 -26.77711 -26.48809 -25.29481 -23.70025 -23.43884 -22.32053 -21.78754 -21.41185 -20.49634 -18.86562 -18.73155 -18.47824 -17.64671 -17.04602 -16.69389 -16.61185 -16.28645 -15.80673 -15.75053 -15.50222 -15.27526 -14.98159 -14.79446 -14.65067 -14.38810 -14.30449 -14.12368 -13.83856 -13.73389 -13.54659 -13.23511 -12.90764 -12.72482 -12.71059 -12.61168 -12.47421 -12.22203 -12.13362 -12.02971 -11.97133 -11.91225 -11.84591 -11.59817 -11.57149 -11.35920 -10.88188 -10.68183 -10.01961 -9.72382 -9.13033 -8.82858 -7.85927 -5.23697 0.37629 0.47989 1.46664 1.47660 1.51429 1.57515 1.99477 2.29487 2.50922 2.82734 3.33832 3.39013 3.50178 3.57920 3.70397 3.83869 3.85939 3.91497 3.99524 4.11725 4.20077 4.29502 4.36796 4.38615 4.41857 4.44729 4.52905 4.60596 4.62704 4.65961 4.72790 4.75719 4.87052 4.89735 4.97389 5.02427 5.11553 5.14756 5.19510 5.29801 5.36071 5.45690 5.49527 5.54324 5.58045 5.62427 5.65784 5.72478 5.86950 6.23573 6.42769 6.51936 7.09201 7.19046 7.76878 8.43617 9.25462 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.002221 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.256376 B =12603.869849 C =12762.383141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.055 0.945 5 C 0.157 3.843 6 H 0.078 0.922 7 N -0.699 5.699 8 C 0.528 3.472 9 O -0.572 6.572 10 C -0.134 4.134 11 H 0.129 0.871 12 C 0.073 3.927 13 O -0.318 6.318 14 C 0.105 3.895 15 C -0.159 4.159 16 C -0.090 4.090 17 C -0.153 4.153 18 C -0.094 4.094 19 C -0.168 4.168 20 C -0.056 4.056 21 C -0.141 4.141 22 C 0.181 3.819 23 N -0.613 5.613 24 C -0.229 4.229 25 H 0.083 0.917 26 C -0.064 4.064 27 N -0.949 5.949 28 Si 0.973 3.027 29 H -0.263 1.263 30 H -0.297 1.297 31 H -0.293 1.293 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.414 0.586 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.040 0.960 49 H -0.008 1.008 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.630 11.708 -3.653 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.072 0.928 5 C 0.051 3.949 6 H 0.096 0.904 7 N -0.350 5.350 8 C 0.314 3.686 9 O -0.451 6.451 10 C -0.155 4.155 11 H 0.147 0.853 12 C -0.002 4.002 13 O -0.232 6.232 14 C 0.061 3.939 15 C -0.178 4.178 16 C -0.108 4.108 17 C -0.171 4.171 18 C -0.112 4.112 19 C -0.169 4.169 20 C -0.094 4.094 21 C -0.180 4.180 22 C 0.055 3.945 23 N -0.338 5.338 24 C -0.358 4.358 25 H 0.100 0.900 26 C -0.258 4.258 27 N -0.598 5.598 28 Si 0.802 3.198 29 H -0.187 1.187 30 H -0.224 1.224 31 H -0.220 1.220 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.252 0.748 38 H 0.152 0.848 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.010 0.990 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.231 11.433 -4.179 27.117 hybrid contribution 1.459 -0.796 0.583 1.761 sum -22.772 10.637 -3.596 25.390 Atomic orbital electron populations 1.21650 0.93816 1.01917 1.01748 1.21903 0.96479 0.97779 1.00475 1.21279 0.84380 0.94505 0.94764 0.92786 1.21648 0.84045 0.92039 0.97187 0.90391 1.45868 1.25416 1.51452 1.12292 1.20508 0.83749 0.80411 0.83898 1.90713 1.74159 1.54277 1.25954 1.21940 0.95609 0.96722 1.01258 0.85345 1.23025 0.85188 0.88309 1.03714 1.86023 1.27114 1.69562 1.40456 1.19006 0.90555 0.94943 0.89418 1.20878 0.96037 0.98486 1.02362 1.21298 0.97359 0.98973 0.93128 1.21377 0.99987 0.95811 0.99899 1.21179 0.93341 0.98897 0.97783 1.19941 1.00205 0.98578 0.98131 1.20243 0.95716 0.97584 0.95827 1.23230 0.95471 0.98786 1.00549 1.21135 0.93940 0.92339 0.87072 1.44688 1.00623 1.68348 1.20099 1.19328 0.90249 1.34516 0.91686 0.89955 1.25711 0.98644 1.02128 0.99269 1.70143 1.10224 1.54588 1.24847 0.85084 0.78616 0.77115 0.78977 1.18718 1.22400 1.22050 0.92397 0.91391 0.93254 0.94750 0.93293 0.74832 0.84781 0.91426 0.84307 0.82824 0.83510 0.84550 0.90623 0.89323 0.91545 0.90418 0.94127 0.98994 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.57 71.98 0.69 -2.80 16 2 C -0.13 -4.49 5.42 30.59 0.17 -4.33 16 3 C 0.16 5.85 2.93 45.34 0.13 5.98 16 4 H 0.05 1.84 7.72 -2.39 -0.02 1.82 16 5 C 0.16 5.19 2.02 46.18 0.09 5.28 16 6 H 0.08 2.93 7.19 -2.38 -0.02 2.91 16 7 N -0.70 -16.70 4.78 -436.91 -2.09 -18.79 16 8 C 0.53 13.02 7.15 87.66 0.63 13.64 16 9 O -0.57 -19.04 15.44 -3.03 -0.05 -19.08 16 10 C -0.13 -2.46 2.75 -11.38 -0.03 -2.49 16 11 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 12 C 0.07 1.24 6.26 72.12 0.45 1.69 16 13 O -0.32 -6.27 10.27 -91.86 -0.94 -7.21 16 14 C 0.11 2.09 6.47 22.52 0.15 2.23 16 15 C -0.16 -2.64 9.94 22.42 0.22 -2.42 16 16 C -0.09 -1.17 10.04 22.22 0.22 -0.94 16 17 C -0.15 -2.02 10.04 22.25 0.22 -1.80 16 18 C -0.09 -1.52 9.67 22.30 0.22 -1.30 16 19 C -0.17 -3.21 5.75 -19.74 -0.11 -3.33 16 20 C -0.06 -1.12 4.66 29.90 0.14 -0.98 16 21 C -0.14 -5.23 6.77 31.98 0.22 -5.01 16 22 C 0.18 8.84 5.41 86.85 0.47 9.31 16 23 N -0.61 -29.84 3.13 -668.26 -2.09 -31.93 16 24 C -0.23 -12.23 9.76 84.03 0.82 -11.41 16 25 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 26 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 27 N -0.95 -56.61 10.57 21.65 0.23 -56.38 16 28 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 29 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 30 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 31 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.05 1.29 7.40 -2.39 -0.02 1.27 16 35 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 36 H 0.05 1.88 7.91 -2.39 -0.02 1.86 16 37 H 0.41 7.45 7.81 -92.71 -0.72 6.72 16 38 H 0.13 1.68 7.54 -2.39 -0.02 1.67 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.08 1.73 7.70 -2.39 -0.02 1.71 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.04 2.23 6.93 -2.39 -0.02 2.21 16 49 H -0.01 -0.44 8.06 -2.38 -0.02 -0.46 16 50 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -69.86 396.84 2.45 -67.41 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.21 Total: 20.75 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.16 Total: -1.79 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.95 Total: -107.11 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.99 Total: -26.30 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.86 2.45 -67.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087649577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.949 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds