Wall clock time and date at job start Wed Apr 1 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 H 1.09000 * 109.87449 * 54.19321 * 3 2 1 5 5 C 1.54421 * 110.00709 * 293.10048 * 3 2 1 6 6 H 1.09000 * 110.72938 * 336.66319 * 5 3 2 7 7 N 1.46502 * 110.76017 * 99.96922 * 5 3 2 8 8 C 1.34776 * 119.99957 * 199.94208 * 7 5 3 9 9 O 1.21277 * 120.00196 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99935 * 179.97438 * 8 7 5 11 11 H 1.08995 * 109.68492 * 304.48268 * 10 8 7 12 12 C 1.53415 * 109.68228 * 65.00171 * 10 8 7 13 13 C 1.53076 * 108.30021 * 184.42819 * 12 10 8 14 14 C 1.50770 * 109.67862 * 311.79064 * 13 12 10 15 15 C 1.38504 * 118.76297 * 197.82305 * 14 13 12 16 16 C 1.38104 * 120.31614 * 180.15634 * 15 14 13 17 17 C 1.38283 * 119.98541 * 0.03106 * 16 15 14 18 18 C 1.37971 * 119.95569 * 359.91548 * 17 16 15 19 19 C 1.38369 * 121.40735 * 17.84544 * 14 13 12 20 20 O 1.35851 * 121.80407 * 359.48413 * 19 14 13 21 21 C 1.55159 * 102.89674 * 218.31878 * 5 3 2 22 22 C 1.54910 * 101.61289 * 35.50492 * 21 5 3 23 23 N 1.47025 * 109.88075 * 175.20498 * 3 2 1 24 24 C 1.36934 * 125.65345 * 298.55202 * 23 3 2 25 25 H 1.08009 * 119.99414 * 347.90408 * 24 23 3 26 26 C 1.38808 * 120.00333 * 167.90268 * 24 23 3 27 27 N 1.31620 * 120.00133 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00099 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.46937 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.47138 * 119.99877 * 28 26 24 31 31 H 1.48491 * 109.47345 * 240.00213 * 28 26 24 32 32 H 1.08997 * 109.47432 * 185.43562 * 1 2 3 33 33 H 1.09002 * 109.46794 * 305.44196 * 1 2 3 34 34 H 1.09004 * 109.46692 * 65.43319 * 1 2 3 35 35 H 1.09004 * 109.46883 * 239.99894 * 2 1 3 36 36 H 1.09004 * 109.46988 * 120.00141 * 2 1 3 37 37 H 0.96997 * 120.00150 * 19.93628 * 7 5 3 38 38 H 1.09000 * 109.69639 * 304.13102 * 12 10 8 39 39 H 1.08999 * 109.69603 * 64.68726 * 12 10 8 40 40 H 1.08997 * 109.43658 * 71.85197 * 13 12 10 41 41 H 1.08998 * 109.43284 * 191.72676 * 13 12 10 42 42 H 1.08007 * 119.84432 * 0.18530 * 15 14 13 43 43 H 1.07999 * 120.00399 * 180.02562 * 16 15 14 44 44 H 1.08001 * 120.02312 * 179.97438 * 17 16 15 45 45 H 1.08008 * 119.88859 * 179.97438 * 18 17 16 46 46 H 1.08995 * 111.00598 * 277.40851 * 21 5 3 47 47 H 1.09002 * 111.00327 * 153.59210 * 21 5 3 48 48 H 1.08998 * 110.37141 * 81.80838 * 22 21 5 49 49 H 1.08998 * 110.36712 * 204.02577 * 22 21 5 50 50 H 0.96991 * 120.00316 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9917 0.8313 5 6 1.6795 2.1303 -1.3347 6 1 1.5279 1.3910 -2.1211 7 7 0.4925 2.9749 -1.1795 8 6 -0.2228 3.3376 -2.2627 9 8 0.1165 2.9653 -3.3659 10 6 -1.4441 4.2058 -2.1030 11 1 -2.1377 3.7389 -1.4038 12 6 -1.0314 5.5865 -1.5769 13 6 -2.3009 6.4028 -1.3213 14 6 -3.2132 6.3107 -2.5182 15 6 -4.2214 7.2494 -2.6615 16 6 -5.0774 7.1934 -3.7438 17 6 -4.9303 6.1961 -4.6903 18 6 -3.9271 5.2589 -4.5534 19 6 -3.0614 5.3136 -3.4655 20 8 -2.0806 4.3785 -3.3699 21 6 2.9337 2.9952 -1.6285 22 6 4.0696 2.0905 -1.0891 23 7 3.5057 1.4545 0.1156 24 6 4.2276 0.9568 1.1674 25 1 3.7275 0.6874 2.0861 26 6 5.6018 0.7983 1.0529 27 7 6.2111 1.1260 -0.0668 28 14 6.5865 0.1199 2.4880 29 1 5.6729 -0.1695 3.6224 30 1 7.2700 -1.1312 2.0720 31 1 7.5994 1.1203 2.9103 32 1 -0.3634 -1.0230 0.0973 33 1 -0.3633 0.5959 0.8373 34 1 -0.3633 0.4273 -0.9347 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 0.2212 3.2729 -0.2972 38 1 -0.4737 5.4737 -0.6472 39 1 -0.4119 6.0919 -2.3178 40 1 -2.8138 6.0103 -0.4433 41 1 -2.0332 7.4451 -1.1486 42 1 -4.3384 8.0294 -1.9235 43 1 -5.8616 7.9283 -3.8507 44 1 -5.5997 6.1515 -5.5368 45 1 -3.8135 4.4801 -5.2932 46 1 2.8939 3.9388 -1.0843 47 1 3.0470 3.1682 -2.6987 48 1 4.3359 1.3346 -1.8278 49 1 4.9419 2.6907 -0.8301 50 1 7.1713 1.0149 -0.1469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087766109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:28 Heat of formation + Delta-G solvation = -30.448201 kcal Electronic energy + Delta-G solvation = -30523.038081 eV Core-core repulsion = 26515.608357 eV Total energy + Delta-G solvation = -4007.429724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.16455 -39.63182 -38.02133 -37.20171 -34.77365 -33.99412 -32.81147 -31.87033 -30.98801 -30.44854 -29.02035 -27.15577 -26.07889 -24.36522 -24.07872 -22.74527 -22.34214 -21.03408 -20.35335 -20.13693 -19.52036 -18.16809 -17.31034 -16.95990 -16.81206 -15.86866 -15.46850 -15.37410 -14.84272 -14.72899 -14.52100 -14.23238 -14.15161 -13.94414 -13.76469 -13.55784 -13.32198 -13.21781 -12.83799 -12.74089 -12.14100 -12.06394 -11.97786 -11.79712 -11.69359 -11.53597 -11.26927 -11.16451 -10.92396 -10.87364 -10.76974 -10.64328 -10.47717 -10.29561 -10.07806 -9.80259 -9.68044 -9.56919 -9.07256 -8.73320 -8.61615 -8.40300 -6.86268 -5.77219 -3.14022 1.03247 1.16413 2.50972 2.61383 3.36193 3.41584 3.43602 3.44586 3.61742 4.22244 4.34971 4.41110 4.45356 4.53496 4.68180 4.80284 4.87478 4.96669 5.14124 5.20582 5.24722 5.26629 5.31861 5.45644 5.47226 5.51408 5.57407 5.67698 5.70358 5.76222 5.77246 5.81327 6.01292 6.02322 6.17569 6.19163 6.23449 6.25387 6.36811 6.42326 6.49837 6.52007 6.65031 6.68422 6.90084 7.07842 7.20151 7.49651 7.55779 7.61867 7.77095 8.22643 8.28931 9.14997 9.75995 10.42600 11.33804 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002235 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.190056 B =12524.620808 C =12674.257012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.140 3.860 6 H 0.093 0.907 7 N -0.708 5.708 8 C 0.520 3.480 9 O -0.517 6.517 10 C 0.076 3.924 11 H 0.097 0.903 12 C -0.150 4.150 13 C -0.076 4.076 14 C -0.164 4.164 15 C -0.085 4.085 16 C -0.155 4.155 17 C -0.088 4.088 18 C -0.146 4.146 19 C 0.136 3.864 20 O -0.287 6.287 21 C -0.156 4.156 22 C 0.172 3.828 23 N -0.594 5.594 24 C -0.226 4.226 25 H 0.077 0.923 26 C -0.005 4.005 27 N -0.917 5.917 28 Si 0.911 3.089 29 H -0.279 1.279 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.026 0.974 49 H 0.080 0.920 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.859 11.549 -3.176 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.036 3.964 6 H 0.111 0.889 7 N -0.360 5.360 8 C 0.304 3.696 9 O -0.391 6.391 10 C 0.016 3.984 11 H 0.115 0.885 12 C -0.188 4.188 13 C -0.113 4.113 14 C -0.164 4.164 15 C -0.103 4.103 16 C -0.173 4.173 17 C -0.106 4.106 18 C -0.165 4.165 19 C 0.090 3.910 20 O -0.200 6.200 21 C -0.196 4.196 22 C 0.047 3.953 23 N -0.319 5.319 24 C -0.355 4.355 25 H 0.094 0.906 26 C -0.202 4.202 27 N -0.563 5.563 28 Si 0.741 3.259 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.232 0.768 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.044 0.956 49 H 0.098 0.902 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.271 11.088 -4.081 24.332 hybrid contribution 0.403 -0.183 1.295 1.368 sum -20.868 10.905 -2.786 23.710 Atomic orbital electron populations 1.21778 0.97267 1.00622 1.00848 1.22031 0.93592 0.99144 1.02494 1.21074 0.87301 0.93394 0.92853 0.94700 1.22162 0.82987 0.92297 0.98949 0.88872 1.45924 1.28787 1.52525 1.08810 1.19786 0.83667 0.80935 0.85260 1.90748 1.69223 1.54102 1.25042 1.22270 0.94252 0.96562 0.85337 0.88545 1.22229 0.98697 0.94345 1.03524 1.20496 0.93695 1.01599 0.95486 1.19856 1.00347 0.97408 0.98826 1.20889 0.93991 0.97633 0.97752 1.21016 1.00845 0.99922 0.95562 1.20934 0.96948 0.93940 0.98801 1.20643 0.95361 1.01821 0.98662 1.18781 0.88562 0.88505 0.95113 1.86090 1.47937 1.54179 1.31811 1.23432 0.96575 0.99067 1.00513 1.21491 0.93217 0.93147 0.87462 1.44469 0.98418 1.68986 1.20013 1.18990 0.89337 1.35861 0.91281 0.90562 1.24882 0.96920 1.01143 0.97248 1.69930 1.08846 1.52815 1.24758 0.86070 0.80077 0.78420 0.81326 1.20467 1.21704 1.21754 0.93598 0.93431 0.93358 0.92353 0.91581 0.76788 0.88796 0.89562 0.90030 0.89457 0.85825 0.85937 0.85419 0.85041 0.92005 0.91821 0.95615 0.90211 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.65 37.16 0.36 -1.72 16 2 C -0.13 -2.38 5.43 -26.73 -0.15 -2.53 16 3 C 0.16 3.08 2.91 -66.90 -0.19 2.88 16 4 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.43 2.01 -66.04 -0.13 2.30 16 6 H 0.09 1.79 7.35 -51.93 -0.38 1.41 16 7 N -0.71 -9.62 4.92 -51.98 -0.26 -9.87 16 8 C 0.52 7.63 7.19 -10.99 -0.08 7.55 16 9 O -0.52 -9.98 16.25 -14.21 -0.23 -10.21 16 10 C 0.08 0.87 3.21 -27.67 -0.09 0.78 16 11 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.15 -1.36 5.46 -26.48 -0.14 -1.51 16 13 C -0.08 -0.58 5.86 -27.81 -0.16 -0.74 16 14 C -0.16 -1.59 5.75 -104.44 -0.60 -2.19 16 15 C -0.08 -0.70 9.67 -39.53 -0.38 -1.08 16 16 C -0.16 -1.22 10.04 -39.61 -0.40 -1.62 16 17 C -0.09 -0.74 10.04 -39.66 -0.40 -1.14 16 18 C -0.15 -1.55 9.94 -39.34 -0.39 -1.94 16 19 C 0.14 1.61 6.47 -39.20 -0.25 1.36 16 20 O -0.29 -3.99 9.46 -39.04 -0.37 -4.36 16 21 C -0.16 -2.99 6.76 -24.58 -0.17 -3.16 16 22 C 0.17 4.08 5.46 -2.52 -0.01 4.07 16 23 N -0.59 -14.29 3.13 -162.51 -0.51 -14.80 16 24 C -0.23 -5.99 9.72 -15.06 -0.15 -6.14 16 25 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 26 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 27 N -0.92 -26.27 10.48 55.49 0.58 -25.69 16 28 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.68 7.48 -51.93 -0.39 0.29 16 35 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 36 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.40 4.25 8.07 -40.82 -0.33 3.92 16 38 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.03 0.67 8.11 -51.93 -0.42 0.25 16 49 H 0.08 2.11 6.74 -51.93 -0.35 1.76 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -32.39 398.83 -11.35 -43.74 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.12 Total: 3.74 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.43 Total: -5.06 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.18 Total: -50.36 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.60 Total: -14.58 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.39 -11.35 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087766109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.295 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds