Wall clock time and date at job start Wed Apr 1 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 H 1.09000 * 109.87449 * 54.19321 * 3 2 1 5 5 C 1.54421 * 110.00709 * 293.10048 * 3 2 1 6 6 H 1.09000 * 110.72938 * 336.66319 * 5 3 2 7 7 N 1.46502 * 110.76017 * 99.96922 * 5 3 2 8 8 C 1.34776 * 119.99957 * 199.94208 * 7 5 3 9 9 O 1.21277 * 120.00196 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99935 * 179.97438 * 8 7 5 11 11 H 1.08995 * 109.68492 * 304.48268 * 10 8 7 12 12 C 1.53415 * 109.68228 * 65.00171 * 10 8 7 13 13 C 1.53076 * 108.30021 * 184.42819 * 12 10 8 14 14 C 1.50770 * 109.67862 * 311.79064 * 13 12 10 15 15 C 1.38504 * 118.76297 * 197.82305 * 14 13 12 16 16 C 1.38104 * 120.31614 * 180.15634 * 15 14 13 17 17 C 1.38283 * 119.98541 * 0.03106 * 16 15 14 18 18 C 1.37971 * 119.95569 * 359.91548 * 17 16 15 19 19 C 1.38369 * 121.40735 * 17.84544 * 14 13 12 20 20 O 1.35851 * 121.80407 * 359.48413 * 19 14 13 21 21 C 1.55159 * 102.89674 * 218.31878 * 5 3 2 22 22 C 1.54910 * 101.61289 * 35.50492 * 21 5 3 23 23 N 1.47025 * 109.88075 * 175.20498 * 3 2 1 24 24 C 1.36934 * 125.65345 * 298.55202 * 23 3 2 25 25 H 1.08009 * 119.99414 * 347.90408 * 24 23 3 26 26 C 1.38808 * 120.00333 * 167.90268 * 24 23 3 27 27 N 1.31620 * 120.00133 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00099 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.46937 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.47138 * 119.99877 * 28 26 24 31 31 H 1.48491 * 109.47345 * 240.00213 * 28 26 24 32 32 H 1.08997 * 109.47432 * 185.43562 * 1 2 3 33 33 H 1.09002 * 109.46794 * 305.44196 * 1 2 3 34 34 H 1.09004 * 109.46692 * 65.43319 * 1 2 3 35 35 H 1.09004 * 109.46883 * 239.99894 * 2 1 3 36 36 H 1.09004 * 109.46988 * 120.00141 * 2 1 3 37 37 H 0.96997 * 120.00150 * 19.93628 * 7 5 3 38 38 H 1.09000 * 109.69639 * 304.13102 * 12 10 8 39 39 H 1.08999 * 109.69603 * 64.68726 * 12 10 8 40 40 H 1.08997 * 109.43658 * 71.85197 * 13 12 10 41 41 H 1.08998 * 109.43284 * 191.72676 * 13 12 10 42 42 H 1.08007 * 119.84432 * 0.18530 * 15 14 13 43 43 H 1.07999 * 120.00399 * 180.02562 * 16 15 14 44 44 H 1.08001 * 120.02312 * 179.97438 * 17 16 15 45 45 H 1.08008 * 119.88859 * 179.97438 * 18 17 16 46 46 H 1.08995 * 111.00598 * 277.40851 * 21 5 3 47 47 H 1.09002 * 111.00327 * 153.59210 * 21 5 3 48 48 H 1.08998 * 110.37141 * 81.80838 * 22 21 5 49 49 H 1.08998 * 110.36712 * 204.02577 * 22 21 5 50 50 H 0.96991 * 120.00316 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9917 0.8313 5 6 1.6795 2.1303 -1.3347 6 1 1.5279 1.3910 -2.1211 7 7 0.4925 2.9749 -1.1795 8 6 -0.2228 3.3376 -2.2627 9 8 0.1165 2.9653 -3.3659 10 6 -1.4441 4.2058 -2.1030 11 1 -2.1377 3.7389 -1.4038 12 6 -1.0314 5.5865 -1.5769 13 6 -2.3009 6.4028 -1.3213 14 6 -3.2132 6.3107 -2.5182 15 6 -4.2214 7.2494 -2.6615 16 6 -5.0774 7.1934 -3.7438 17 6 -4.9303 6.1961 -4.6903 18 6 -3.9271 5.2589 -4.5534 19 6 -3.0614 5.3136 -3.4655 20 8 -2.0806 4.3785 -3.3699 21 6 2.9337 2.9952 -1.6285 22 6 4.0696 2.0905 -1.0891 23 7 3.5057 1.4545 0.1156 24 6 4.2276 0.9568 1.1674 25 1 3.7275 0.6874 2.0861 26 6 5.6018 0.7983 1.0529 27 7 6.2111 1.1260 -0.0668 28 14 6.5865 0.1199 2.4880 29 1 5.6729 -0.1695 3.6224 30 1 7.2700 -1.1312 2.0720 31 1 7.5994 1.1203 2.9103 32 1 -0.3634 -1.0230 0.0973 33 1 -0.3633 0.5959 0.8373 34 1 -0.3633 0.4273 -0.9347 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 0.2212 3.2729 -0.2972 38 1 -0.4737 5.4737 -0.6472 39 1 -0.4119 6.0919 -2.3178 40 1 -2.8138 6.0103 -0.4433 41 1 -2.0332 7.4451 -1.1486 42 1 -4.3384 8.0294 -1.9235 43 1 -5.8616 7.9283 -3.8507 44 1 -5.5997 6.1515 -5.5368 45 1 -3.8135 4.4801 -5.2932 46 1 2.8939 3.9388 -1.0843 47 1 3.0470 3.1682 -2.6987 48 1 4.3359 1.3346 -1.8278 49 1 4.9419 2.6907 -0.8301 50 1 7.1713 1.0149 -0.1469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087766109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:28 Heat of formation + Delta-G solvation = -48.797332 kcal Electronic energy + Delta-G solvation = -30523.833759 eV Core-core repulsion = 26515.608357 eV Total energy + Delta-G solvation = -4008.225402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02524 -40.83919 -39.36076 -38.18957 -35.81233 -35.27655 -34.28494 -33.52195 -31.94708 -31.11881 -30.72123 -28.40132 -27.28803 -26.13761 -24.80042 -23.74415 -23.40721 -22.41998 -21.76304 -21.42547 -20.70959 -19.00601 -18.71635 -18.41982 -17.74097 -17.20522 -16.67077 -16.37109 -16.21185 -15.83681 -15.66741 -15.41012 -15.25924 -15.18905 -14.93480 -14.57867 -14.35690 -14.28819 -14.11624 -13.76055 -13.56647 -13.45837 -13.25407 -12.91068 -12.85825 -12.72596 -12.59268 -12.41653 -12.24963 -12.18135 -12.03894 -11.96907 -11.95534 -11.89213 -11.56680 -11.45905 -11.36968 -10.82043 -10.68277 -10.08208 -9.71066 -9.12430 -8.84924 -7.83752 -5.21973 0.38858 0.47638 1.44715 1.47169 1.48817 1.52588 1.58802 2.48202 2.60098 2.83707 3.34771 3.43078 3.50060 3.64182 3.75737 3.81528 3.83554 3.87348 3.93290 4.17252 4.19619 4.26195 4.35851 4.36689 4.40964 4.51485 4.60592 4.62695 4.64048 4.65121 4.74214 4.84651 4.89453 4.97962 5.01209 5.04543 5.12632 5.16099 5.20818 5.28414 5.36724 5.45272 5.50814 5.54060 5.56316 5.62061 5.63984 5.73057 5.88164 6.23646 6.37495 6.53789 7.09333 7.14795 7.77240 8.43424 9.26827 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002235 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.190056 B =12524.620808 C =12674.257012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.160 3.840 4 H 0.060 0.940 5 C 0.158 3.842 6 H 0.073 0.927 7 N -0.690 5.690 8 C 0.522 3.478 9 O -0.569 6.569 10 C 0.079 3.921 11 H 0.125 0.875 12 C -0.146 4.146 13 C -0.072 4.072 14 C -0.170 4.170 15 C -0.087 4.087 16 C -0.154 4.154 17 C -0.091 4.091 18 C -0.170 4.170 19 C 0.104 3.896 20 O -0.322 6.322 21 C -0.141 4.141 22 C 0.180 3.820 23 N -0.613 5.613 24 C -0.226 4.226 25 H 0.086 0.914 26 C -0.067 4.067 27 N -0.952 5.952 28 Si 0.975 3.025 29 H -0.262 1.262 30 H -0.298 1.298 31 H -0.294 1.294 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.418 0.582 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.122 0.878 46 H 0.078 0.922 47 H 0.061 0.939 48 H -0.011 1.011 49 H 0.047 0.953 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 13.432 -0.747 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.054 3.946 4 H 0.078 0.922 5 C 0.053 3.947 6 H 0.091 0.909 7 N -0.344 5.344 8 C 0.308 3.692 9 O -0.447 6.447 10 C 0.020 3.980 11 H 0.143 0.857 12 C -0.184 4.184 13 C -0.108 4.108 14 C -0.171 4.171 15 C -0.105 4.105 16 C -0.172 4.172 17 C -0.109 4.109 18 C -0.188 4.188 19 C 0.059 3.941 20 O -0.236 6.236 21 C -0.181 4.181 22 C 0.054 3.946 23 N -0.337 5.337 24 C -0.355 4.355 25 H 0.104 0.896 26 C -0.260 4.260 27 N -0.601 5.601 28 Si 0.804 3.196 29 H -0.186 1.186 30 H -0.226 1.226 31 H -0.221 1.221 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.256 0.744 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.140 0.860 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.007 0.993 49 H 0.066 0.934 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.646 12.990 -1.604 27.905 hybrid contribution 1.341 -0.739 0.472 1.602 sum -23.305 12.251 -1.132 26.353 Atomic orbital electron populations 1.21669 0.93744 1.02069 1.01829 1.21927 0.96592 0.97656 1.00595 1.21268 0.84572 0.94575 0.94217 0.92240 1.21672 0.83722 0.91834 0.97498 0.90861 1.45606 1.27286 1.51611 1.09857 1.20442 0.84208 0.80280 0.84302 1.90731 1.70742 1.56109 1.27157 1.22330 0.92911 0.97362 0.85388 0.85723 1.22251 0.99620 0.92752 1.03733 1.20578 0.92481 1.02465 0.95291 1.20163 1.01068 0.96891 0.98993 1.21270 0.93219 0.97659 0.98354 1.21422 1.01097 0.99774 0.94879 1.21231 0.96462 0.93466 0.99763 1.20826 0.96513 1.02714 0.98788 1.19080 0.88978 0.89413 0.96614 1.86024 1.49036 1.55412 1.33149 1.23231 0.95652 0.98940 1.00269 1.21174 0.93944 0.92479 0.86992 1.44703 1.00699 1.68985 1.19354 1.19366 0.89684 1.34343 0.92139 0.89597 1.25693 0.98227 1.02381 0.99678 1.70148 1.08464 1.54639 1.26801 0.85056 0.78578 0.77010 0.78981 1.18566 1.22556 1.22089 0.92336 0.91004 0.93391 0.94817 0.92986 0.74429 0.86423 0.91622 0.87704 0.87617 0.83047 0.83223 0.83315 0.85985 0.90382 0.92065 0.99303 0.93442 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.65 71.98 0.69 -2.78 16 2 C -0.13 -4.50 5.43 30.60 0.17 -4.34 16 3 C 0.16 5.94 2.91 45.37 0.13 6.07 16 4 H 0.06 1.97 7.69 -2.39 -0.02 1.95 16 5 C 0.16 5.44 2.01 46.21 0.09 5.54 16 6 H 0.07 2.88 7.35 -2.39 -0.02 2.86 16 7 N -0.69 -17.40 4.92 -436.76 -2.15 -19.55 16 8 C 0.52 14.85 7.19 87.66 0.63 15.48 16 9 O -0.57 -22.50 16.25 15.89 0.26 -22.25 16 10 C 0.08 1.69 3.21 29.99 0.10 1.79 16 11 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 12 C -0.15 -2.26 5.46 30.76 0.17 -2.09 16 13 C -0.07 -0.83 5.86 29.90 0.18 -0.65 16 14 C -0.17 -2.90 5.75 -19.75 -0.11 -3.01 16 15 C -0.09 -1.14 9.67 22.30 0.22 -0.93 16 16 C -0.15 -1.95 10.04 22.25 0.22 -1.73 16 17 C -0.09 -1.40 10.04 22.22 0.22 -1.18 16 18 C -0.17 -3.61 9.94 22.42 0.22 -3.39 16 19 C 0.10 2.40 6.47 22.52 0.15 2.55 16 20 O -0.32 -8.98 9.46 -72.97 -0.69 -9.67 16 21 C -0.14 -5.48 6.76 31.99 0.22 -5.27 16 22 C 0.18 8.93 5.46 86.85 0.47 9.41 16 23 N -0.61 -29.85 3.13 -668.06 -2.09 -31.94 16 24 C -0.23 -12.03 9.72 84.03 0.82 -11.21 16 25 H 0.09 4.32 7.83 -2.91 -0.02 4.29 16 26 C -0.07 -3.72 5.47 84.86 0.46 -3.25 16 27 N -0.95 -56.88 10.48 21.65 0.23 -56.66 16 28 Si 0.97 44.87 29.55 68.60 2.03 46.89 16 29 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 30 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 31 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.25 7.48 -2.39 -0.02 1.23 16 35 H 0.03 1.32 8.04 -2.38 -0.02 1.31 16 36 H 0.05 1.97 7.85 -2.39 -0.02 1.95 16 37 H 0.42 7.37 8.07 -92.71 -0.75 6.62 16 38 H 0.12 1.23 7.85 -2.39 -0.02 1.21 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 47 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 48 H -0.01 -0.62 8.11 -2.39 -0.02 -0.64 16 49 H 0.05 2.64 6.74 -2.39 -0.02 2.63 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -75.56 398.83 2.81 -72.75 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.18 Total: 19.42 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.04 Total: 1.00 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.01 Total: -108.15 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.43 Total: -31.92 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.56 2.81 -72.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087766109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.949 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds