Wall clock time and date at job start Wed Apr 1 2020 02:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 H 1.09000 * 109.99184 * 305.57307 * 3 2 1 5 5 C 1.54321 * 109.87922 * 184.48192 * 3 2 1 6 6 H 1.09001 * 110.72398 * 336.92435 * 5 3 2 7 7 N 1.46498 * 110.72335 * 100.02602 * 5 3 2 8 8 C 1.34773 * 120.00088 * 204.99894 * 7 5 3 9 9 O 1.21282 * 120.00439 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99840 * 179.97438 * 8 7 5 11 11 H 1.08994 * 110.81040 * 306.85679 * 10 8 7 12 12 C 1.54709 * 110.74723 * 70.17431 * 10 8 7 13 13 C 1.51637 * 101.92273 * 143.64379 * 12 10 8 14 14 C 1.38930 * 107.03395 * 344.49433 * 13 12 10 15 15 C 1.39244 * 118.87387 * 179.45750 * 14 13 12 16 16 C 1.37971 * 120.24353 * 0.15028 * 15 14 13 17 17 C 1.38242 * 120.34937 * 0.10708 * 16 15 14 18 18 C 1.37698 * 132.18137 * 164.27817 * 13 12 10 19 19 C 1.50699 * 120.00867 * 0.52246 * 18 13 12 20 20 O 1.36136 * 111.23235 * 359.10026 * 14 13 12 21 21 C 1.55155 * 102.94060 * 218.38495 * 5 3 2 22 22 C 1.54914 * 101.58292 * 35.49998 * 21 5 3 23 23 N 1.47017 * 109.88377 * 66.66901 * 3 2 1 24 24 C 1.36937 * 125.65331 * 298.39198 * 23 3 2 25 25 H 1.08006 * 119.99589 * 336.91926 * 24 23 3 26 26 C 1.38813 * 120.00177 * 156.90856 * 24 23 3 27 27 N 1.31615 * 119.99583 * 158.56636 * 26 24 23 28 28 Si 1.86797 * 120.00062 * 338.57155 * 26 24 23 29 29 H 1.48503 * 109.46890 * 91.00993 * 28 26 24 30 30 H 1.48499 * 109.47036 * 211.00858 * 28 26 24 31 31 H 1.48494 * 109.47153 * 331.01339 * 28 26 24 32 32 H 1.08997 * 109.46735 * 53.25586 * 1 2 3 33 33 H 1.09003 * 109.46909 * 173.25914 * 1 2 3 34 34 H 1.08996 * 109.47176 * 293.25999 * 1 2 3 35 35 H 1.08999 * 109.47536 * 239.99551 * 2 1 3 36 36 H 1.09003 * 109.46956 * 119.99266 * 2 1 3 37 37 H 0.97004 * 120.00122 * 24.99180 * 7 5 3 38 38 H 1.09004 * 110.93279 * 261.80125 * 12 10 8 39 39 H 1.09004 * 110.94045 * 25.44529 * 12 10 8 40 40 H 1.08004 * 119.87502 * 179.88277 * 15 14 13 41 41 H 1.07999 * 119.82417 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.11538 * 179.86131 * 17 16 15 43 43 H 1.09005 * 109.47579 * 89.99719 * 19 18 13 44 44 H 1.08996 * 109.47217 * 210.00332 * 19 18 13 45 45 H 1.09008 * 109.47337 * 330.00220 * 19 18 13 46 46 H 1.09005 * 111.00901 * 153.57609 * 21 5 3 47 47 H 1.08999 * 111.00519 * 277.43148 * 21 5 3 48 48 H 1.08997 * 110.36993 * 204.14889 * 22 21 5 49 49 H 1.09004 * 110.45578 * 81.87301 * 22 21 5 50 50 H 0.96997 * 119.99698 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6025 1.9925 -0.8332 5 6 3.5790 1.4550 -0.1134 6 1 3.9989 0.5102 0.2317 7 7 3.9951 1.7328 -1.4903 8 6 5.1974 1.3106 -1.9292 9 8 5.9352 0.7010 -1.1841 10 6 5.6252 1.5959 -3.3458 11 1 4.8705 1.2547 -4.0543 12 6 5.9154 3.1034 -3.5376 13 6 7.0913 3.0767 -4.4946 14 6 7.5950 1.7820 -4.4845 15 6 8.6852 1.4783 -5.2958 16 6 9.2522 2.4526 -6.0913 17 6 8.7453 3.7388 -6.0888 18 6 7.6613 4.0486 -5.2862 19 6 7.1047 5.4490 -5.2789 20 8 6.8980 0.9885 -3.6255 21 6 3.9874 2.6183 0.8286 22 6 2.9341 2.4890 1.9572 23 7 1.6905 2.0965 1.2695 24 6 0.4203 2.3058 1.7363 25 1 -0.4103 2.3365 1.0465 26 6 0.2000 2.4782 3.0959 27 7 -0.8920 3.0821 3.5142 28 14 1.4537 1.8534 4.3318 29 1 2.4342 2.9284 4.6287 30 1 0.7597 1.4568 5.5833 31 1 2.1636 0.6784 3.7657 32 1 -0.3633 0.6148 -0.8235 33 1 -0.3633 -1.0206 -0.1206 34 1 -0.3633 0.4058 0.9441 35 1 1.8935 -0.5139 -0.8899 36 1 1.8934 -0.5137 0.8901 37 1 3.4053 2.2206 -2.0862 38 1 5.0605 3.6107 -3.9847 39 1 6.1922 3.5702 -2.5922 40 1 9.0910 0.4774 -5.2991 41 1 10.0973 2.2095 -6.7183 42 1 9.1935 4.4990 -6.7114 43 1 7.6084 6.0363 -4.5112 44 1 7.2668 5.9095 -6.2534 45 1 6.0360 5.4141 -5.0668 46 1 4.9955 2.4715 1.2165 47 1 3.9014 3.5797 0.3223 48 1 2.8019 3.4449 2.4640 49 1 3.2320 1.7203 2.6702 50 1 -1.0461 3.2023 4.4643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087798301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:02 Heat of formation + Delta-G solvation = -15.781020 kcal Electronic energy + Delta-G solvation = -30428.472419 eV Core-core repulsion = 26421.678712 eV Total energy + Delta-G solvation = -4006.793707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.69279 -39.76508 -38.28139 -37.53890 -34.39341 -33.68763 -32.57570 -32.24743 -31.50529 -30.30569 -29.17109 -27.34076 -26.92760 -24.97884 -23.91640 -22.44438 -22.20988 -21.23591 -21.17978 -20.46916 -19.49882 -17.85381 -17.46448 -16.98420 -16.94054 -16.32164 -16.03730 -15.22085 -14.99934 -14.87344 -14.42760 -14.07378 -14.00187 -13.89435 -13.61493 -13.46548 -13.26056 -13.15101 -12.90266 -12.81018 -12.64910 -12.51144 -12.28819 -12.15115 -11.92183 -11.84820 -11.45968 -11.36751 -11.13520 -11.10523 -10.95522 -10.70889 -10.46467 -10.34339 -10.14144 -9.91598 -9.78315 -9.34957 -9.01670 -8.94874 -8.65466 -8.43405 -7.07002 -5.99863 -3.32422 0.94924 1.04644 2.34206 2.53548 3.25964 3.33706 3.45481 3.47647 3.49898 3.99998 4.16098 4.41887 4.51268 4.52711 4.62723 4.68096 4.84026 4.89691 5.00756 5.08483 5.09913 5.15323 5.23516 5.25567 5.27337 5.33048 5.40161 5.48202 5.54538 5.75652 5.78734 5.83761 5.88912 6.00311 6.04207 6.08259 6.10931 6.21149 6.24263 6.27571 6.34608 6.48622 6.56784 6.57944 6.69212 6.71278 6.86803 6.98216 7.28490 7.42545 7.70337 8.10693 8.26718 8.77790 9.63289 10.12792 11.15418 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.002394 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.722411 B =11695.388102 C =11980.236787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.047 0.953 5 C 0.134 3.866 6 H 0.099 0.901 7 N -0.708 5.708 8 C 0.518 3.482 9 O -0.517 6.517 10 C 0.065 3.935 11 H 0.113 0.887 12 C -0.096 4.096 13 C -0.175 4.175 14 C 0.112 3.888 15 C -0.143 4.143 16 C -0.080 4.080 17 C -0.152 4.152 18 C -0.034 4.034 19 C -0.118 4.118 20 O -0.274 6.274 21 C -0.140 4.140 22 C 0.111 3.889 23 N -0.598 5.598 24 C -0.235 4.235 25 H 0.096 0.904 26 C 0.025 3.975 27 N -0.906 5.906 28 Si 0.878 3.122 29 H -0.287 1.287 30 H -0.302 1.302 31 H -0.271 1.271 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.401 0.599 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.029 0.971 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.054 1.819 -20.875 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.065 0.935 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.361 5.361 8 C 0.302 3.698 9 O -0.391 6.391 10 C 0.005 3.995 11 H 0.131 0.869 12 C -0.133 4.133 13 C -0.176 4.176 14 C 0.067 3.933 15 C -0.162 4.162 16 C -0.098 4.098 17 C -0.170 4.170 18 C -0.034 4.034 19 C -0.174 4.174 20 O -0.186 6.186 21 C -0.180 4.180 22 C -0.014 4.014 23 N -0.324 5.324 24 C -0.362 4.362 25 H 0.113 0.887 26 C -0.174 4.174 27 N -0.549 5.549 28 Si 0.708 3.292 29 H -0.214 1.214 30 H -0.230 1.230 31 H -0.196 1.196 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.236 0.764 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.047 0.953 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.436 1.220 -20.037 25.945 hybrid contribution 0.300 -0.148 0.586 0.674 sum 16.737 1.072 -19.451 25.683 Atomic orbital electron populations 1.21949 0.95306 0.99387 1.04459 1.21914 0.97304 0.97233 1.00056 1.21191 0.89759 0.92685 0.91228 0.93542 1.22182 0.95844 0.99397 0.79618 0.88315 1.45878 1.17651 1.57942 1.14600 1.19917 0.82156 0.79756 0.88012 1.90759 1.52340 1.39368 1.56650 1.23209 0.86850 0.93342 0.96130 0.86923 1.21702 0.97357 0.94495 0.99751 1.20503 1.01200 0.94004 1.01873 1.19614 0.94118 0.89139 0.90461 1.20248 0.97088 1.00999 0.97856 1.20855 0.98929 0.92479 0.97559 1.20933 0.97460 0.97019 1.01633 1.19122 0.94774 0.95032 0.94439 1.20828 1.01308 0.92497 1.02794 1.86955 1.27411 1.45007 1.59267 1.23136 0.99085 0.98228 0.97545 1.21965 0.86336 0.98941 0.94151 1.44764 1.01840 1.66128 1.19689 1.18561 0.82746 1.43423 0.91464 0.88674 1.25089 0.96158 0.99444 0.96733 1.69816 1.27564 1.42560 1.14980 0.87011 0.80968 0.80060 0.81191 1.21414 1.23025 1.19641 0.93998 0.94922 0.88740 0.93848 0.92410 0.76385 0.87994 0.88468 0.85329 0.85069 0.85456 0.90754 0.91216 0.91281 0.91296 0.90883 0.92093 0.95297 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.04 37.16 0.34 -2.47 16 2 C -0.13 -2.22 5.45 -26.73 -0.15 -2.36 16 3 C 0.16 2.84 2.99 -66.95 -0.20 2.64 16 4 H 0.05 0.80 7.72 -51.93 -0.40 0.40 16 5 C 0.13 2.15 2.85 -66.10 -0.19 1.96 16 6 H 0.10 1.75 7.25 -51.93 -0.38 1.37 16 7 N -0.71 -8.84 5.18 -52.03 -0.27 -9.11 16 8 C 0.52 7.13 7.12 -10.99 -0.08 7.05 16 9 O -0.52 -9.52 16.22 -13.49 -0.22 -9.74 16 10 C 0.06 0.70 4.05 -26.98 -0.11 0.59 16 11 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.10 -0.86 6.19 -26.52 -0.16 -1.03 16 13 C -0.17 -1.78 6.07 -104.10 -0.63 -2.41 16 14 C 0.11 1.32 7.04 -38.95 -0.27 1.05 16 15 C -0.14 -1.41 10.06 -39.31 -0.40 -1.81 16 16 C -0.08 -0.63 10.02 -39.68 -0.40 -1.03 16 17 C -0.15 -1.18 9.72 -39.52 -0.38 -1.56 16 18 C -0.03 -0.29 5.87 -104.76 -0.61 -0.90 16 19 C -0.12 -0.73 9.91 36.01 0.36 -0.38 16 20 O -0.27 -3.75 10.39 -39.21 -0.41 -4.16 16 21 C -0.14 -2.36 6.77 -24.58 -0.17 -2.52 16 22 C 0.11 2.33 4.78 -2.53 -0.01 2.32 16 23 N -0.60 -13.29 2.88 -162.57 -0.47 -13.76 16 24 C -0.24 -6.12 7.96 -15.06 -0.12 -6.24 16 25 H 0.10 2.62 7.13 -52.48 -0.37 2.24 16 26 C 0.02 0.69 5.44 -17.43 -0.09 0.60 16 27 N -0.91 -26.85 13.97 55.49 0.78 -26.07 16 28 Si 0.88 22.03 24.43 -169.99 -4.15 17.87 16 29 H -0.29 -7.06 6.97 56.52 0.39 -6.67 16 30 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 31 H -0.27 -6.71 6.39 56.52 0.36 -6.35 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 2.06 5.36 -51.93 -0.28 1.79 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 3.81 8.37 -40.82 -0.34 3.47 16 38 H 0.10 0.63 7.90 -51.93 -0.41 0.22 16 39 H 0.10 0.94 7.92 -51.93 -0.41 0.53 16 40 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 45 H 0.07 0.40 7.57 -51.92 -0.39 0.00 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 1.35 7.27 -51.93 -0.38 0.97 16 49 H 0.03 0.65 5.27 -51.93 -0.27 0.37 16 50 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -33.05 392.31 -10.00 -43.05 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.89 Total: 2.48 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.28 Total: -6.49 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.04 Total: -48.94 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.63 Total: -13.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.05 -10.00 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087798301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.273 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds