Wall clock time and date at job start Wed Apr 1 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 H 1.09000 * 109.99184 * 305.57307 * 3 2 1 5 5 C 1.54321 * 109.87922 * 184.48192 * 3 2 1 6 6 H 1.09001 * 110.72398 * 336.92435 * 5 3 2 7 7 N 1.46498 * 110.72335 * 100.02602 * 5 3 2 8 8 C 1.34773 * 120.00088 * 204.99894 * 7 5 3 9 9 O 1.21282 * 120.00439 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99840 * 179.97438 * 8 7 5 11 11 H 1.08994 * 110.81040 * 306.85679 * 10 8 7 12 12 C 1.54709 * 110.74723 * 70.17431 * 10 8 7 13 13 C 1.51637 * 101.92273 * 143.64379 * 12 10 8 14 14 C 1.38930 * 107.03395 * 344.49433 * 13 12 10 15 15 C 1.39244 * 118.87387 * 179.45750 * 14 13 12 16 16 C 1.37971 * 120.24353 * 0.15028 * 15 14 13 17 17 C 1.38242 * 120.34937 * 0.10708 * 16 15 14 18 18 C 1.37698 * 132.18137 * 164.27817 * 13 12 10 19 19 C 1.50699 * 120.00867 * 0.52246 * 18 13 12 20 20 O 1.36136 * 111.23235 * 359.10026 * 14 13 12 21 21 C 1.55155 * 102.94060 * 218.38495 * 5 3 2 22 22 C 1.54914 * 101.58292 * 35.49998 * 21 5 3 23 23 N 1.47017 * 109.88377 * 66.66901 * 3 2 1 24 24 C 1.36937 * 125.65331 * 298.39198 * 23 3 2 25 25 H 1.08006 * 119.99589 * 336.91926 * 24 23 3 26 26 C 1.38813 * 120.00177 * 156.90856 * 24 23 3 27 27 N 1.31615 * 119.99583 * 158.56636 * 26 24 23 28 28 Si 1.86797 * 120.00062 * 338.57155 * 26 24 23 29 29 H 1.48503 * 109.46890 * 91.00993 * 28 26 24 30 30 H 1.48499 * 109.47036 * 211.00858 * 28 26 24 31 31 H 1.48494 * 109.47153 * 331.01339 * 28 26 24 32 32 H 1.08997 * 109.46735 * 53.25586 * 1 2 3 33 33 H 1.09003 * 109.46909 * 173.25914 * 1 2 3 34 34 H 1.08996 * 109.47176 * 293.25999 * 1 2 3 35 35 H 1.08999 * 109.47536 * 239.99551 * 2 1 3 36 36 H 1.09003 * 109.46956 * 119.99266 * 2 1 3 37 37 H 0.97004 * 120.00122 * 24.99180 * 7 5 3 38 38 H 1.09004 * 110.93279 * 261.80125 * 12 10 8 39 39 H 1.09004 * 110.94045 * 25.44529 * 12 10 8 40 40 H 1.08004 * 119.87502 * 179.88277 * 15 14 13 41 41 H 1.07999 * 119.82417 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.11538 * 179.86131 * 17 16 15 43 43 H 1.09005 * 109.47579 * 89.99719 * 19 18 13 44 44 H 1.08996 * 109.47217 * 210.00332 * 19 18 13 45 45 H 1.09008 * 109.47337 * 330.00220 * 19 18 13 46 46 H 1.09005 * 111.00901 * 153.57609 * 21 5 3 47 47 H 1.08999 * 111.00519 * 277.43148 * 21 5 3 48 48 H 1.08997 * 110.36993 * 204.14889 * 22 21 5 49 49 H 1.09004 * 110.45578 * 81.87301 * 22 21 5 50 50 H 0.96997 * 119.99698 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6025 1.9925 -0.8332 5 6 3.5790 1.4550 -0.1134 6 1 3.9989 0.5102 0.2317 7 7 3.9951 1.7328 -1.4903 8 6 5.1974 1.3106 -1.9292 9 8 5.9352 0.7010 -1.1841 10 6 5.6252 1.5959 -3.3458 11 1 4.8705 1.2547 -4.0543 12 6 5.9154 3.1034 -3.5376 13 6 7.0913 3.0767 -4.4946 14 6 7.5950 1.7820 -4.4845 15 6 8.6852 1.4783 -5.2958 16 6 9.2522 2.4526 -6.0913 17 6 8.7453 3.7388 -6.0888 18 6 7.6613 4.0486 -5.2862 19 6 7.1047 5.4490 -5.2789 20 8 6.8980 0.9885 -3.6255 21 6 3.9874 2.6183 0.8286 22 6 2.9341 2.4890 1.9572 23 7 1.6905 2.0965 1.2695 24 6 0.4203 2.3058 1.7363 25 1 -0.4103 2.3365 1.0465 26 6 0.2000 2.4782 3.0959 27 7 -0.8920 3.0821 3.5142 28 14 1.4537 1.8534 4.3318 29 1 2.4342 2.9284 4.6287 30 1 0.7597 1.4568 5.5833 31 1 2.1636 0.6784 3.7657 32 1 -0.3633 0.6148 -0.8235 33 1 -0.3633 -1.0206 -0.1206 34 1 -0.3633 0.4058 0.9441 35 1 1.8935 -0.5139 -0.8899 36 1 1.8934 -0.5137 0.8901 37 1 3.4053 2.2206 -2.0862 38 1 5.0605 3.6107 -3.9847 39 1 6.1922 3.5702 -2.5922 40 1 9.0910 0.4774 -5.2991 41 1 10.0973 2.2095 -6.7183 42 1 9.1935 4.4990 -6.7114 43 1 7.6084 6.0363 -4.5112 44 1 7.2668 5.9095 -6.2534 45 1 6.0360 5.4141 -5.0668 46 1 4.9955 2.4715 1.2165 47 1 3.9014 3.5797 0.3223 48 1 2.8019 3.4449 2.4640 49 1 3.2320 1.7203 2.6702 50 1 -1.0461 3.2023 4.4643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087798301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:01 Heat of formation + Delta-G solvation = -36.253571 kcal Electronic energy + Delta-G solvation = -30429.360175 eV Core-core repulsion = 26421.678712 eV Total energy + Delta-G solvation = -4007.681463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.48844 -40.95190 -39.54347 -38.43898 -35.76640 -34.48149 -34.15565 -33.87712 -32.29999 -31.44681 -30.45927 -28.66313 -27.66593 -26.33642 -25.12806 -23.87602 -23.16526 -22.45506 -21.85298 -21.71029 -20.99162 -18.92240 -18.77883 -18.32480 -17.68698 -17.50198 -17.07238 -16.85996 -16.24191 -15.93251 -15.64238 -15.32549 -14.86472 -14.81251 -14.73733 -14.64782 -14.43861 -14.28725 -14.07128 -13.89518 -13.85332 -13.59781 -13.43869 -13.20626 -13.07233 -12.96485 -12.86233 -12.62101 -12.39129 -12.38579 -12.09296 -12.05112 -11.98650 -11.73889 -11.68524 -11.54602 -11.27273 -10.96089 -10.71313 -10.15206 -9.63863 -9.14328 -8.98122 -8.13259 -5.39819 0.31214 0.37642 1.30104 1.33488 1.40027 1.46105 1.54483 2.43394 2.44906 2.73574 3.07520 3.20709 3.31571 3.44468 3.63344 3.71497 3.73837 3.87328 3.95681 4.10746 4.11863 4.23644 4.24945 4.39225 4.44120 4.47465 4.50452 4.58832 4.62911 4.65852 4.70834 4.82352 4.84054 4.87501 4.89982 4.94765 4.97717 5.06284 5.13164 5.19304 5.28492 5.32597 5.36001 5.46677 5.54177 5.60365 5.67526 5.68220 5.80890 6.17205 6.17590 6.42139 6.79791 7.07867 7.58130 8.14979 9.06020 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.002394 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.722411 B =11695.388102 C =11980.236787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.067 0.933 5 C 0.148 3.852 6 H 0.083 0.917 7 N -0.690 5.690 8 C 0.522 3.478 9 O -0.568 6.568 10 C 0.067 3.933 11 H 0.144 0.856 12 C -0.089 4.089 13 C -0.185 4.185 14 C 0.077 3.923 15 C -0.160 4.160 16 C -0.080 4.080 17 C -0.152 4.152 18 C -0.041 4.041 19 C -0.117 4.117 20 O -0.308 6.308 21 C -0.127 4.127 22 C 0.105 3.895 23 N -0.613 5.613 24 C -0.201 4.201 25 H 0.078 0.922 26 C -0.032 4.032 27 N -0.953 5.953 28 Si 0.926 3.074 29 H -0.281 1.281 30 H -0.314 1.314 31 H -0.269 1.269 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.421 0.579 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.046 0.954 49 H 0.017 0.983 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.669 2.722 -24.181 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.051 3.949 4 H 0.085 0.915 5 C 0.042 3.958 6 H 0.101 0.899 7 N -0.344 5.344 8 C 0.307 3.693 9 O -0.446 6.446 10 C 0.008 3.992 11 H 0.161 0.839 12 C -0.126 4.126 13 C -0.186 4.186 14 C 0.032 3.968 15 C -0.178 4.178 16 C -0.097 4.097 17 C -0.170 4.170 18 C -0.041 4.041 19 C -0.173 4.173 20 O -0.222 6.222 21 C -0.166 4.166 22 C -0.020 4.020 23 N -0.339 5.339 24 C -0.329 4.329 25 H 0.095 0.905 26 C -0.227 4.227 27 N -0.601 5.601 28 Si 0.756 3.244 29 H -0.208 1.208 30 H -0.243 1.243 31 H -0.195 1.195 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.259 0.741 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.148 0.852 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.110 0.890 48 H 0.064 0.936 49 H 0.034 0.966 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.075 2.131 -23.403 29.647 hybrid contribution -0.130 -0.448 1.440 1.514 sum 17.946 1.683 -21.963 28.412 Atomic orbital electron populations 1.21833 0.95732 1.00508 1.02503 1.21875 0.96781 0.96970 1.00576 1.21350 0.91257 0.92778 0.89518 0.91546 1.21782 0.94156 0.98494 0.81387 0.89856 1.45592 1.17748 1.57668 1.13372 1.20446 0.81523 0.78393 0.88891 1.90742 1.53850 1.41705 1.58281 1.23329 0.86899 0.94738 0.94258 0.83855 1.21730 0.98325 0.93135 0.99388 1.20705 1.01705 0.93746 1.02452 1.19953 0.95305 0.89962 0.91536 1.20535 0.97080 1.01890 0.98333 1.21214 0.99296 0.92189 0.97042 1.21350 0.96885 0.97514 1.01210 1.19493 0.94875 0.95852 0.93922 1.20884 1.01588 0.91036 1.03829 1.86893 1.28679 1.46338 1.60290 1.23037 0.97918 0.99481 0.96187 1.21984 0.87000 0.97647 0.95400 1.44867 1.01071 1.66968 1.20951 1.18502 0.83884 1.39743 0.90797 0.90491 1.25545 0.97603 1.01129 0.98376 1.69912 1.29762 1.45589 1.14810 0.86221 0.79263 0.79707 0.79166 1.20779 1.24290 1.19471 0.92859 0.93055 0.92880 0.90732 0.94426 0.74117 0.84644 0.89385 0.85162 0.82375 0.82804 0.90520 0.89632 0.90646 0.90571 0.88987 0.93555 0.96578 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.04 71.98 0.65 -4.56 16 2 C -0.12 -4.10 5.45 30.60 0.17 -3.93 16 3 C 0.16 5.30 2.99 45.34 0.14 5.44 16 4 H 0.07 2.04 7.72 -2.39 -0.02 2.02 16 5 C 0.15 4.41 2.85 46.18 0.13 4.54 16 6 H 0.08 2.84 7.25 -2.39 -0.02 2.82 16 7 N -0.69 -15.17 5.18 -436.93 -2.26 -17.43 16 8 C 0.52 13.39 7.12 87.66 0.62 14.01 16 9 O -0.57 -20.63 16.22 15.17 0.25 -20.38 16 10 C 0.07 1.32 4.05 30.43 0.12 1.44 16 11 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 12 C -0.09 -1.36 6.19 30.73 0.19 -1.17 16 13 C -0.19 -3.39 6.07 -19.53 -0.12 -3.51 16 14 C 0.08 1.75 7.04 22.68 0.16 1.91 16 15 C -0.16 -3.01 10.06 22.45 0.23 -2.79 16 16 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 17 C -0.15 -1.88 9.72 22.31 0.22 -1.66 16 18 C -0.04 -0.60 5.87 -19.96 -0.12 -0.71 16 19 C -0.12 -1.06 9.91 71.24 0.71 -0.35 16 20 O -0.31 -8.31 10.39 -76.89 -0.80 -9.11 16 21 C -0.13 -4.00 6.77 31.99 0.22 -3.79 16 22 C 0.10 4.30 4.78 86.86 0.42 4.72 16 23 N -0.61 -26.77 2.88 -668.25 -1.92 -28.69 16 24 C -0.20 -10.53 7.96 84.03 0.67 -9.86 16 25 H 0.08 4.30 7.13 -2.91 -0.02 4.28 16 26 C -0.03 -1.82 5.44 84.86 0.46 -1.36 16 27 N -0.95 -58.30 13.97 21.65 0.30 -58.00 16 28 Si 0.93 46.69 24.43 68.60 1.68 48.36 16 29 H -0.28 -13.69 6.97 99.48 0.69 -13.00 16 30 H -0.31 -16.28 7.11 99.48 0.71 -15.57 16 31 H -0.27 -13.28 6.39 99.48 0.64 -12.64 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 2.32 5.36 -2.39 -0.01 2.31 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.42 6.21 8.37 -92.71 -0.78 5.44 16 38 H 0.14 1.09 7.90 -2.38 -0.02 1.07 16 39 H 0.09 1.51 7.92 -2.38 -0.02 1.49 16 40 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 45 H 0.07 0.59 7.57 -2.38 -0.02 0.57 16 46 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.05 2.03 7.27 -2.39 -0.02 2.01 16 49 H 0.02 0.72 5.27 -2.39 -0.01 0.71 16 50 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -75.23 392.31 2.41 -72.82 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.09 Total: 14.92 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.08 Total: -2.48 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -3.88 Total: -104.12 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.55 Total: -29.49 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.68 Total: 48.36 kcal Total: -75.23 2.41 -72.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087798301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.563 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds