Wall clock time and date at job start Wed Apr 1 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 H 1.08998 * 109.46855 * 305.08219 * 3 2 1 5 5 C 1.52998 * 109.47020 * 185.08359 * 3 2 1 6 6 N 1.46897 * 109.47049 * 180.02562 * 5 3 2 7 7 C 1.46897 * 110.99775 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47008 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.37328 * 55.73569 * 8 7 6 10 10 C 1.54003 * 110.33015 * 293.54703 * 8 7 6 11 11 N 1.47480 * 107.24793 * 242.31913 * 10 8 7 12 12 C 1.34776 * 127.03486 * 154.60976 * 11 10 8 13 13 O 1.21278 * 120.00330 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00285 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47297 * 179.97438 * 14 12 11 16 16 C 1.76206 * 100.00108 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99875 * 0.02562 * 16 15 14 18 18 C 1.38790 * 119.99986 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00595 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99888 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47294 * 59.99570 * 20 18 16 22 22 H 1.48502 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47126 * 299.99693 * 20 18 16 24 24 C 1.48382 * 105.79811 * 334.77951 * 11 10 8 25 25 C 1.54620 * 110.32587 * 177.92333 * 8 7 6 26 26 H 1.09000 * 110.74188 * 22.40826 * 25 8 7 27 27 C 1.52995 * 110.74084 * 259.25932 * 25 8 7 28 28 O 1.42900 * 109.47025 * 65.08359 * 3 2 1 29 29 C 1.42893 * 113.99676 * 259.12262 * 28 3 2 30 30 H 1.08994 * 109.47437 * 294.22111 * 1 2 3 31 31 H 1.09003 * 109.46792 * 54.22250 * 1 2 3 32 32 H 1.09003 * 109.47529 * 174.22088 * 1 2 3 33 33 H 1.09000 * 109.46974 * 239.99780 * 2 1 3 34 34 H 1.09001 * 109.46562 * 120.00292 * 2 1 3 35 35 H 1.09006 * 109.47087 * 59.99596 * 5 3 2 36 36 H 1.09004 * 109.47406 * 300.00040 * 5 3 2 37 37 H 1.00894 * 111.00043 * 303.95020 * 6 5 3 38 38 H 1.08999 * 109.47667 * 60.00050 * 7 6 5 39 39 H 1.08999 * 109.47628 * 299.99718 * 7 6 5 40 40 H 1.09007 * 109.90913 * 1.77529 * 10 8 7 41 41 H 1.08997 * 109.91751 * 122.85736 * 10 8 7 42 42 H 1.08993 * 109.47551 * 300.00300 * 14 12 11 43 43 H 1.09005 * 109.47073 * 60.00045 * 14 12 11 44 44 H 0.96988 * 120.00217 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.51653 * 280.62974 * 24 11 10 46 46 H 1.09001 * 110.84065 * 157.65956 * 24 11 10 47 47 H 1.08995 * 109.47424 * 60.00202 * 27 25 8 48 48 H 1.09001 * 109.47282 * 180.02562 * 27 25 8 49 49 H 1.09006 * 109.47242 * 300.00117 * 27 25 8 50 50 H 1.08997 * 109.47710 * 305.65552 * 29 28 3 51 51 H 1.08996 * 109.47371 * 65.66391 * 29 28 3 52 52 H 1.09004 * 109.46915 * 185.65834 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9819 -0.8410 5 6 3.5646 1.4443 -0.1278 6 7 4.0544 2.8293 -0.1272 7 6 5.5178 2.8701 -0.2481 8 6 5.9894 4.3257 -0.2445 9 1 5.6313 4.8383 0.6483 10 6 5.4975 5.0506 -1.5111 11 7 6.6925 5.4699 -2.2668 12 6 6.7772 5.6931 -3.5933 13 8 5.7991 5.5501 -4.2959 14 6 8.0872 6.1202 -4.2035 15 16 7.8791 6.3374 -5.9883 16 6 9.5147 6.8215 -6.4304 17 1 10.2783 6.9008 -5.6707 18 6 9.8217 7.1009 -7.7548 19 7 8.8912 7.0038 -8.6808 20 14 11.5557 7.6134 -8.2235 21 1 12.5075 6.5349 -7.8544 22 1 11.6226 7.8523 -9.6877 23 1 11.9159 8.8600 -7.5012 24 6 7.7814 5.5910 -1.2661 25 6 7.5324 4.3905 -0.3186 26 1 7.9374 3.4724 -0.7442 27 6 8.1307 4.6539 1.0647 28 8 1.6637 2.0808 1.2219 29 6 0.5245 2.9353 1.1042 30 1 -0.3634 0.4216 0.9371 31 1 -0.3633 0.6008 -0.8338 32 1 -0.3634 -1.0224 -0.1035 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.8517 0.9573 -1.0598 36 1 4.0005 0.9048 0.7131 37 1 3.6157 3.3682 -0.8586 38 1 5.8189 2.3934 -1.1809 39 1 5.9668 2.3403 0.5920 40 1 4.8945 4.3732 -2.1159 41 1 4.9082 5.9245 -1.2335 42 1 8.4060 7.0621 -3.7572 43 1 8.8416 5.3559 -4.0164 44 1 9.1058 7.1987 -9.6063 45 1 7.6987 6.5328 -0.7236 46 1 8.7578 5.5081 -1.7436 47 1 7.8445 3.8505 1.7434 48 1 9.2172 4.6960 0.9886 49 1 7.7566 5.6035 1.4476 50 1 0.6958 3.6621 0.3102 51 1 -0.3552 2.3375 0.8660 52 1 0.3638 3.4584 2.0470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105846301.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:00 Heat of formation + Delta-G solvation = -93.109395 kcal Electronic energy + Delta-G solvation = -27963.736237 eV Core-core repulsion = 24089.033271 eV Total energy + Delta-G solvation = -3874.702966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.06393 -38.98617 -37.80462 -35.78246 -33.66634 -32.83524 -32.43372 -31.05659 -29.54608 -28.12638 -26.41782 -26.30661 -25.53495 -24.93926 -23.07928 -21.75376 -21.38086 -20.10961 -19.29798 -17.68362 -17.42007 -16.80354 -16.31726 -15.98255 -15.57574 -15.22649 -15.14789 -14.81099 -14.57311 -14.47628 -14.18631 -13.98570 -13.78585 -13.51899 -13.44232 -13.12047 -13.00292 -12.88602 -12.56784 -12.48586 -12.18076 -12.11497 -12.06571 -11.88046 -11.66594 -11.58973 -11.38716 -11.05325 -11.04452 -11.00203 -10.96364 -10.80705 -10.76156 -10.73502 -9.82809 -9.69545 -9.40379 -9.06579 -8.67849 -8.53131 -8.24499 -6.51049 -6.22027 -3.92959 2.90876 3.06191 3.22921 3.25417 3.28713 3.51187 3.61021 3.71798 4.19619 4.34907 4.35196 4.50241 4.57013 4.67162 4.72004 4.92998 4.96153 5.00428 5.04521 5.12849 5.13255 5.14788 5.16589 5.19542 5.25302 5.29637 5.35360 5.37193 5.43209 5.47595 5.50405 5.56791 5.57056 5.58992 5.68344 5.70531 5.71305 5.81830 5.84508 5.88469 5.92561 5.93861 6.11084 6.13399 6.40780 6.70621 6.96333 7.10992 7.58570 7.71553 8.34457 8.56304 9.22967 10.85367 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.001965 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.141387 B =14247.734739 C =15353.133813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.091 3.909 4 H 0.060 0.940 5 C 0.056 3.944 6 N -0.682 5.682 7 C 0.069 3.931 8 C -0.094 4.094 9 H 0.095 0.905 10 C 0.112 3.888 11 N -0.629 5.629 12 C 0.551 3.449 13 O -0.518 6.518 14 C -0.146 4.146 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.105 3.895 25 C -0.101 4.101 26 H 0.083 0.917 27 C -0.140 4.140 28 O -0.367 6.367 29 C 0.029 3.971 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.339 0.661 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.041 0.959 51 H 0.039 0.961 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 -10.990 23.772 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.033 3.967 4 H 0.079 0.921 5 C -0.073 4.073 6 N -0.313 5.313 7 C -0.060 4.060 8 C -0.114 4.114 9 H 0.113 0.887 10 C -0.012 4.012 11 N -0.366 5.366 12 C 0.340 3.660 13 O -0.392 6.392 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.019 4.019 25 C -0.121 4.121 26 H 0.101 0.899 27 C -0.198 4.198 28 O -0.286 6.286 29 C -0.067 4.067 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.157 0.843 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.189 -11.138 23.251 28.518 hybrid contribution 2.178 0.320 -0.681 2.304 sum -10.011 -10.819 22.571 26.957 Atomic orbital electron populations 1.21824 0.95529 1.01851 1.01901 1.21974 0.96606 0.96661 1.02850 1.22194 0.94084 0.92893 0.87547 0.92147 1.22149 0.93962 0.90325 1.00870 1.60420 1.05582 1.11892 1.53434 1.22002 0.87845 0.95785 1.00383 1.22212 0.94988 0.95824 0.98360 0.88666 1.21977 0.88636 0.98785 0.91773 1.48866 1.11766 1.69791 1.06151 1.20005 0.90485 0.76151 0.79333 1.90702 1.38507 1.50596 1.59415 1.23501 0.96591 1.03834 1.05759 1.85393 1.16166 1.89056 0.92794 1.22817 0.95820 1.53577 0.96143 0.90979 1.24991 0.98336 0.94937 0.95312 1.70005 1.32992 1.45747 1.01551 0.86223 0.82651 0.79104 0.77512 1.19939 1.20795 1.19917 1.22634 0.91778 0.97935 0.89538 1.22309 0.94624 0.98990 0.96190 0.89857 1.21729 1.00829 1.02007 0.95192 1.87948 1.47388 1.61931 1.31284 1.22863 0.88246 0.93318 1.02296 0.92185 0.92885 0.92534 0.91053 0.90929 0.93986 0.90176 0.84267 0.94933 0.90590 0.91261 0.91763 0.89300 0.89361 0.92122 0.90903 0.89827 0.92159 0.92237 0.92235 0.94009 0.94257 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.86 37.16 0.33 -0.62 16 2 C -0.14 -0.96 5.64 -26.73 -0.15 -1.11 16 3 C 0.09 0.72 2.48 -26.73 -0.07 0.66 16 4 H 0.06 0.47 7.60 -51.93 -0.39 0.08 16 5 C 0.06 0.46 5.38 -3.83 -0.02 0.44 16 6 N -0.68 -6.16 6.37 -113.78 -0.72 -6.88 16 7 C 0.07 0.61 4.86 -3.82 -0.02 0.59 16 8 C -0.09 -0.85 2.83 -89.24 -0.25 -1.10 16 9 H 0.10 0.82 7.85 -51.93 -0.41 0.41 16 10 C 0.11 1.35 6.15 -2.98 -0.02 1.34 16 11 N -0.63 -9.24 3.30 -169.54 -0.56 -9.80 16 12 C 0.55 10.87 7.91 -10.99 -0.09 10.78 16 13 O -0.52 -12.21 16.20 5.56 0.09 -12.12 16 14 C -0.15 -3.05 5.11 36.01 0.18 -2.86 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 C 0.10 1.14 6.40 -1.97 -0.01 1.12 16 25 C -0.10 -0.88 3.20 -88.74 -0.28 -1.16 16 26 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 27 C -0.14 -0.94 9.17 37.15 0.34 -0.60 16 28 O -0.37 -3.44 10.00 -35.23 -0.35 -3.79 16 29 C 0.03 0.21 10.48 101.05 1.06 1.27 16 30 H 0.06 0.39 6.58 -51.93 -0.34 0.05 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.34 3.15 7.38 -39.29 -0.29 2.86 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.92 6.75 -51.92 -0.35 0.57 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.09 1.70 7.92 -51.91 -0.41 1.29 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 46 H 0.08 0.91 7.27 -51.93 -0.38 0.53 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 50 H 0.04 0.29 7.99 -51.93 -0.41 -0.12 16 51 H 0.04 0.24 6.00 -51.93 -0.31 -0.07 16 52 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 425.29 15.07 6.41 6.41 Total: -1.00 -34.41 425.29 -10.02 -44.43 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -9.59 Total: -0.96 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 1.20 Total: -4.29 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.55 Total: -42.21 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.26 Total: -15.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.41 -10.02 -44.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105846301.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.679 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds