Wall clock time and date at job start Wed Apr 1 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 H 1.08998 * 109.46855 * 305.08219 * 3 2 1 5 5 C 1.52998 * 109.47020 * 185.08359 * 3 2 1 6 6 N 1.46897 * 109.47049 * 180.02562 * 5 3 2 7 7 C 1.46897 * 110.99775 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47008 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.37328 * 55.73569 * 8 7 6 10 10 C 1.54003 * 110.33015 * 293.54703 * 8 7 6 11 11 N 1.47480 * 107.24793 * 242.31913 * 10 8 7 12 12 C 1.34776 * 127.03486 * 154.60976 * 11 10 8 13 13 O 1.21278 * 120.00330 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00285 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47297 * 179.97438 * 14 12 11 16 16 C 1.76206 * 100.00108 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99875 * 0.02562 * 16 15 14 18 18 C 1.38790 * 119.99986 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00595 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99888 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47294 * 59.99570 * 20 18 16 22 22 H 1.48502 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47126 * 299.99693 * 20 18 16 24 24 C 1.48382 * 105.79811 * 334.77951 * 11 10 8 25 25 C 1.54620 * 110.32587 * 177.92333 * 8 7 6 26 26 H 1.09000 * 110.74188 * 22.40826 * 25 8 7 27 27 C 1.52995 * 110.74084 * 259.25932 * 25 8 7 28 28 O 1.42900 * 109.47025 * 65.08359 * 3 2 1 29 29 C 1.42893 * 113.99676 * 259.12262 * 28 3 2 30 30 H 1.08994 * 109.47437 * 294.22111 * 1 2 3 31 31 H 1.09003 * 109.46792 * 54.22250 * 1 2 3 32 32 H 1.09003 * 109.47529 * 174.22088 * 1 2 3 33 33 H 1.09000 * 109.46974 * 239.99780 * 2 1 3 34 34 H 1.09001 * 109.46562 * 120.00292 * 2 1 3 35 35 H 1.09006 * 109.47087 * 59.99596 * 5 3 2 36 36 H 1.09004 * 109.47406 * 300.00040 * 5 3 2 37 37 H 1.00894 * 111.00043 * 303.95020 * 6 5 3 38 38 H 1.08999 * 109.47667 * 60.00050 * 7 6 5 39 39 H 1.08999 * 109.47628 * 299.99718 * 7 6 5 40 40 H 1.09007 * 109.90913 * 1.77529 * 10 8 7 41 41 H 1.08997 * 109.91751 * 122.85736 * 10 8 7 42 42 H 1.08993 * 109.47551 * 300.00300 * 14 12 11 43 43 H 1.09005 * 109.47073 * 60.00045 * 14 12 11 44 44 H 0.96988 * 120.00217 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.51653 * 280.62974 * 24 11 10 46 46 H 1.09001 * 110.84065 * 157.65956 * 24 11 10 47 47 H 1.08995 * 109.47424 * 60.00202 * 27 25 8 48 48 H 1.09001 * 109.47282 * 180.02562 * 27 25 8 49 49 H 1.09006 * 109.47242 * 300.00117 * 27 25 8 50 50 H 1.08997 * 109.47710 * 305.65552 * 29 28 3 51 51 H 1.08996 * 109.47371 * 65.66391 * 29 28 3 52 52 H 1.09004 * 109.46915 * 185.65834 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9819 -0.8410 5 6 3.5646 1.4443 -0.1278 6 7 4.0544 2.8293 -0.1272 7 6 5.5178 2.8701 -0.2481 8 6 5.9894 4.3257 -0.2445 9 1 5.6313 4.8383 0.6483 10 6 5.4975 5.0506 -1.5111 11 7 6.6925 5.4699 -2.2668 12 6 6.7772 5.6931 -3.5933 13 8 5.7991 5.5501 -4.2959 14 6 8.0872 6.1202 -4.2035 15 16 7.8791 6.3374 -5.9883 16 6 9.5147 6.8215 -6.4304 17 1 10.2783 6.9008 -5.6707 18 6 9.8217 7.1009 -7.7548 19 7 8.8912 7.0038 -8.6808 20 14 11.5557 7.6134 -8.2235 21 1 12.5075 6.5349 -7.8544 22 1 11.6226 7.8523 -9.6877 23 1 11.9159 8.8600 -7.5012 24 6 7.7814 5.5910 -1.2661 25 6 7.5324 4.3905 -0.3186 26 1 7.9374 3.4724 -0.7442 27 6 8.1307 4.6539 1.0647 28 8 1.6637 2.0808 1.2219 29 6 0.5245 2.9353 1.1042 30 1 -0.3634 0.4216 0.9371 31 1 -0.3633 0.6008 -0.8338 32 1 -0.3634 -1.0224 -0.1035 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.8517 0.9573 -1.0598 36 1 4.0005 0.9048 0.7131 37 1 3.6157 3.3682 -0.8586 38 1 5.8189 2.3934 -1.1809 39 1 5.9668 2.3403 0.5920 40 1 4.8945 4.3732 -2.1159 41 1 4.9082 5.9245 -1.2335 42 1 8.4060 7.0621 -3.7572 43 1 8.8416 5.3559 -4.0164 44 1 9.1058 7.1987 -9.6063 45 1 7.6987 6.5328 -0.7236 46 1 8.7578 5.5081 -1.7436 47 1 7.8445 3.8505 1.7434 48 1 9.2172 4.6960 0.9886 49 1 7.7566 5.6035 1.4476 50 1 0.6958 3.6621 0.3102 51 1 -0.3552 2.3375 0.8660 52 1 0.3638 3.4584 2.0470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105846301.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:59 Heat of formation + Delta-G solvation = -116.284645 kcal Electronic energy + Delta-G solvation = -27964.741191 eV Core-core repulsion = 24089.033271 eV Total energy + Delta-G solvation = -3875.707920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.20552 -39.69630 -39.02628 -36.58972 -34.60509 -34.35635 -33.77879 -31.94862 -30.81275 -28.97413 -27.71790 -27.21811 -26.99398 -25.86578 -23.72412 -22.56906 -22.00735 -21.02004 -20.59668 -19.60155 -18.23898 -17.93582 -17.38615 -16.89784 -16.68396 -16.64552 -16.48956 -15.90061 -15.82195 -15.35129 -15.29049 -14.99776 -14.71960 -14.60127 -14.37952 -14.02109 -13.88182 -13.81083 -13.64234 -13.45174 -13.24762 -13.10257 -12.97703 -12.87675 -12.86582 -12.64162 -12.60414 -12.47006 -12.15659 -11.96743 -11.84594 -11.69301 -11.57979 -11.52424 -11.44912 -11.14338 -10.98826 -10.31864 -10.30622 -9.77879 -9.39383 -8.70405 -8.35972 -6.15297 1.21537 1.43276 1.43391 1.52702 1.53993 2.05580 2.25906 2.91167 2.97952 3.02098 3.21613 3.49448 3.55206 3.83213 3.87990 3.90271 4.07911 4.13415 4.16629 4.21081 4.35255 4.39193 4.40751 4.41919 4.51362 4.52854 4.55296 4.58828 4.62062 4.64654 4.70799 4.75889 4.81214 4.88754 4.89412 4.89872 4.99626 5.07266 5.07708 5.16175 5.18299 5.24193 5.36737 5.37440 5.39709 5.54118 6.00099 6.17997 6.29070 6.38945 6.42674 7.04740 7.07810 8.73109 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.001965 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.141387 B =14247.734739 C =15353.133813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.092 3.908 4 H 0.058 0.942 5 C 0.057 3.943 6 N -0.686 5.686 7 C 0.074 3.926 8 C -0.080 4.080 9 H 0.109 0.891 10 C 0.108 3.892 11 N -0.621 5.621 12 C 0.548 3.452 13 O -0.569 6.569 14 C -0.119 4.119 15 S -0.151 6.151 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 1.000 3.000 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.261 1.261 24 C 0.095 3.905 25 C -0.092 4.092 26 H 0.080 0.920 27 C -0.134 4.134 28 O -0.386 6.386 29 C 0.027 3.973 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.335 0.665 38 H 0.017 0.983 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.272 0.728 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.040 0.960 51 H 0.048 0.952 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -11.073 26.262 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.072 4.072 6 N -0.316 5.316 7 C -0.055 4.055 8 C -0.099 4.099 9 H 0.127 0.873 10 C -0.015 4.015 11 N -0.355 5.355 12 C 0.337 3.663 13 O -0.448 6.448 14 C -0.270 4.270 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.027 4.027 25 C -0.112 4.112 26 H 0.098 0.902 27 C -0.192 4.192 28 O -0.305 6.305 29 C -0.070 4.070 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.036 0.964 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.543 -11.233 25.817 30.064 hybrid contribution 1.594 0.316 -1.313 2.089 sum -8.948 -10.917 24.505 28.280 Atomic orbital electron populations 1.21811 0.95073 1.02338 1.01737 1.21957 0.97006 0.95869 1.03043 1.22226 0.93827 0.93492 0.87125 0.92342 1.22162 0.94288 0.89898 1.00878 1.60469 1.05630 1.12334 1.53189 1.21972 0.87864 0.95572 1.00117 1.22150 0.95306 0.95581 0.96871 0.87259 1.22186 0.87755 0.99067 0.92461 1.48815 1.14082 1.67547 1.05085 1.19758 0.89316 0.76381 0.80869 1.90678 1.39694 1.53266 1.61170 1.23292 0.98005 1.05302 1.00423 1.85583 1.17643 1.89494 0.99626 1.23155 0.95753 1.53624 0.96913 0.89871 1.26153 1.03331 0.94582 0.95109 1.70177 1.35673 1.46886 1.02019 0.84989 0.76408 0.79229 0.77276 1.18582 1.20348 1.18573 1.23016 0.90617 1.00034 0.89014 1.22274 0.94143 0.97765 0.96986 0.90170 1.21700 1.01138 1.02739 0.93586 1.87910 1.48198 1.62376 1.31982 1.22957 0.88030 0.93275 1.02712 0.92504 0.92831 0.91775 0.90418 0.91134 0.93866 0.90178 0.84671 0.96430 0.89337 0.92851 0.91219 0.87583 0.87622 0.91948 0.88908 0.89522 0.91229 0.91546 0.91522 0.94167 0.93322 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.86 71.98 0.64 -1.11 16 2 C -0.14 -1.79 5.64 30.59 0.17 -1.62 16 3 C 0.09 1.40 2.48 30.59 0.08 1.48 16 4 H 0.06 0.90 7.60 -2.39 -0.02 0.88 16 5 C 0.06 0.90 5.38 86.30 0.46 1.37 16 6 N -0.69 -11.77 6.37 -513.89 -3.27 -15.04 16 7 C 0.07 1.20 4.86 86.30 0.42 1.62 16 8 C -0.08 -1.27 2.83 -9.90 -0.03 -1.30 16 9 H 0.11 1.53 7.85 -2.39 -0.02 1.51 16 10 C 0.11 2.53 6.15 86.53 0.53 3.06 16 11 N -0.62 -17.68 3.30 -808.70 -2.67 -20.35 16 12 C 0.55 21.80 7.91 87.66 0.69 22.50 16 13 O -0.57 -27.90 16.20 -3.02 -0.05 -27.94 16 14 C -0.12 -4.95 5.11 71.24 0.36 -4.58 16 15 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 16 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.75 5.49 84.85 0.47 1.21 16 19 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 20 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 C 0.09 1.82 6.40 86.68 0.55 2.38 16 25 C -0.09 -1.34 3.20 -9.58 -0.03 -1.37 16 26 H 0.08 1.27 7.86 -2.39 -0.02 1.25 16 27 C -0.13 -1.31 9.17 71.98 0.66 -0.65 16 28 O -0.39 -6.93 10.00 -148.98 -1.49 -8.42 16 29 C 0.03 0.36 10.48 113.37 1.19 1.55 16 30 H 0.06 0.69 6.58 -2.39 -0.02 0.67 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.34 6.16 7.38 -89.70 -0.66 5.50 16 38 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.44 6.75 -2.38 -0.02 1.42 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.11 3.99 7.92 -2.39 -0.02 3.97 16 44 H 0.27 15.59 8.31 -92.72 -0.77 14.81 16 45 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 46 H 0.09 1.65 7.27 -2.39 -0.02 1.63 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.59 8.11 -2.38 -0.02 0.57 16 50 H 0.04 0.55 7.99 -2.39 -0.02 0.53 16 51 H 0.05 0.56 6.00 -2.39 -0.01 0.54 16 52 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -76.84 425.29 0.70 -76.14 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.22 Total: 22.04 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 6.82 Total: -6.31 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -5.66 Total: -91.43 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.54 Total: -36.37 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -76.84 0.70 -76.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105846301.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.146 kcal (2) G-P(sol) polarization free energy of solvation -76.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds