Wall clock time and date at job start Wed Apr 1 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 H 1.08998 * 109.46687 * 305.00015 * 3 2 1 5 5 C 1.53003 * 109.46994 * 64.99592 * 3 2 1 6 6 C 1.52999 * 109.47303 * 184.99459 * 3 2 1 7 7 N 1.46902 * 109.47117 * 176.21330 * 6 3 2 8 8 C 1.47014 * 110.99967 * 83.45984 * 7 6 3 9 9 C 1.53097 * 109.25570 * 177.60845 * 8 7 6 10 10 O 1.43011 * 109.26060 * 56.85072 * 9 8 7 11 11 C 1.43018 * 113.73903 * 301.33159 * 10 9 8 12 12 C 1.53007 * 109.50478 * 298.73259 * 11 10 9 13 13 C 1.53001 * 109.50653 * 178.64749 * 11 10 9 14 14 N 1.46502 * 109.47032 * 64.99986 * 13 11 10 15 15 C 1.34781 * 119.99790 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99916 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00152 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47407 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00274 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99644 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00027 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47075 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47164 * 119.99477 * 23 21 19 26 26 H 1.48496 * 109.47265 * 239.99919 * 23 21 19 27 27 C 1.47017 * 110.99674 * 319.82801 * 7 6 3 28 28 H 1.09002 * 109.47703 * 300.00304 * 1 2 3 29 29 H 1.09008 * 109.47104 * 60.00390 * 1 2 3 30 30 H 1.09000 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47104 * 119.99610 * 2 1 3 32 32 H 1.09002 * 109.47703 * 239.99696 * 2 1 3 33 33 H 1.09001 * 109.46999 * 74.27014 * 5 3 2 34 34 H 1.09004 * 109.47156 * 194.26790 * 5 3 2 35 35 H 1.09001 * 109.47187 * 314.27269 * 5 3 2 36 36 H 1.08991 * 109.47608 * 296.21207 * 6 3 2 37 37 H 1.09006 * 109.46672 * 56.21646 * 6 3 2 38 38 H 1.08998 * 109.50494 * 297.54471 * 8 7 6 39 39 H 1.08997 * 109.50496 * 57.67994 * 8 7 6 40 40 H 1.09000 * 109.50786 * 176.78862 * 9 8 7 41 41 H 1.09006 * 109.50624 * 296.87348 * 9 8 7 42 42 H 1.08993 * 109.46874 * 59.99931 * 12 11 10 43 43 H 1.08997 * 109.46948 * 180.02562 * 12 11 10 44 44 H 1.08996 * 109.46983 * 299.99817 * 12 11 10 45 45 H 1.09006 * 109.47090 * 184.99557 * 13 11 10 46 46 H 1.08996 * 109.47454 * 304.99487 * 13 11 10 47 47 H 0.96992 * 120.00019 * 359.97438 * 14 13 11 48 48 H 1.09006 * 109.47282 * 300.00668 * 17 15 14 49 49 H 1.09007 * 109.47113 * 60.00476 * 17 15 14 50 50 H 0.97000 * 119.99960 * 180.02562 * 22 21 19 51 51 H 1.09002 * 109.50700 * 302.32253 * 27 7 6 52 52 H 1.08995 * 109.51228 * 62.46213 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4443 -0.1256 7 7 4.0470 2.8290 -0.2168 8 6 4.1846 3.4280 1.1187 9 6 4.7446 4.8462 0.9807 10 8 3.8868 5.6114 0.1299 11 6 3.7306 5.0569 -1.1791 12 6 5.0912 5.0042 -1.8772 13 6 2.7725 5.9294 -1.9926 14 7 3.3718 7.2500 -2.2004 15 6 2.7036 8.1913 -2.8961 16 8 1.6060 7.9452 -3.3497 17 6 3.3197 9.5499 -3.1094 18 16 2.1863 10.5821 -4.0719 19 6 3.1318 12.0657 -4.1695 20 1 4.1045 12.1179 -3.7032 21 6 2.6259 13.1679 -4.8448 22 7 1.4401 13.1044 -5.4126 23 14 3.6278 14.7410 -4.9477 24 1 4.9159 14.5552 -4.2324 25 1 3.8945 15.0658 -6.3720 26 1 2.8696 15.8528 -4.3200 27 6 3.1603 3.6409 -1.0630 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.2596 1.7556 2.1201 34 1 1.7679 3.2041 1.2099 35 1 0.5895 1.9074 1.5235 36 1 4.0021 0.9643 0.7498 37 1 3.8561 0.8983 -1.0229 38 1 3.2085 3.4675 1.6022 39 1 4.8651 2.8249 1.7197 40 1 4.7948 5.3149 1.9635 41 1 5.7436 4.8024 0.5469 42 1 5.7727 4.3813 -1.2980 43 1 4.9714 4.5819 -2.8749 44 1 5.4983 6.0121 -1.9561 45 1 2.5844 5.4598 -2.9581 46 1 1.8323 6.0381 -1.4521 47 1 4.2494 7.4469 -1.8373 48 1 3.5072 10.0196 -2.1438 49 1 4.2604 9.4416 -3.6495 50 1 1.0867 13.8745 -5.8849 51 1 3.0932 3.1931 -2.0546 52 1 2.1679 3.6839 -0.6144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107753535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:27 Heat of formation + Delta-G solvation = -79.075496 kcal Electronic energy + Delta-G solvation = -28767.695890 eV Core-core repulsion = 24893.601480 eV Total energy + Delta-G solvation = -3874.094410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92334 -39.05976 -37.94047 -35.08699 -34.67554 -32.40949 -32.34728 -30.32551 -29.51164 -29.06359 -27.72680 -26.12518 -25.57083 -25.33649 -23.41163 -21.92180 -20.48546 -20.20332 -19.52201 -17.90457 -16.94911 -16.74809 -16.22621 -15.89447 -15.82491 -15.55619 -15.33375 -14.94934 -14.77617 -14.66114 -14.41102 -13.97636 -13.78342 -13.76625 -13.31052 -13.10941 -12.91012 -12.78083 -12.54340 -12.48668 -12.29932 -12.13584 -11.96965 -11.81174 -11.74504 -11.68536 -11.46637 -11.22162 -11.04554 -10.99912 -10.98162 -10.90020 -10.73863 -10.56399 -9.88878 -9.76535 -9.33718 -9.04548 -8.79936 -8.54806 -8.18605 -6.45660 -6.18566 -3.88389 3.04932 3.17329 3.23914 3.28864 3.33186 3.41305 3.48827 3.82357 4.23672 4.23837 4.35069 4.46271 4.50660 4.53213 4.62506 4.71490 4.78341 4.93055 4.96014 5.03712 5.07468 5.16266 5.16600 5.19393 5.21456 5.26250 5.30836 5.35790 5.40296 5.47907 5.51061 5.55030 5.56366 5.61965 5.65153 5.68724 5.71702 5.75286 5.85956 5.90274 5.95999 5.96855 6.06972 6.20538 6.54564 6.58759 6.68388 6.94503 7.63362 7.79969 8.38955 8.68992 9.26917 10.88940 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.001930 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.218365 B =14505.468755 C =15231.321947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.132 4.132 4 H 0.079 0.921 5 C -0.160 4.160 6 C 0.059 3.941 7 N -0.527 5.527 8 C -0.005 4.005 9 C 0.060 3.940 10 O -0.369 6.369 11 C 0.108 3.892 12 C -0.169 4.169 13 C 0.139 3.861 14 N -0.730 5.730 15 C 0.532 3.468 16 O -0.521 6.521 17 C -0.152 4.152 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.028 3.972 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.400 0.600 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.267 0.733 51 H 0.087 0.913 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -27.731 14.959 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.151 4.151 4 H 0.097 0.903 5 C -0.217 4.217 6 C -0.069 4.069 7 N -0.250 5.250 8 C -0.132 4.132 9 C -0.017 4.017 10 O -0.288 6.288 11 C 0.068 3.932 12 C -0.227 4.227 13 C 0.014 3.986 14 N -0.386 5.386 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.101 4.101 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.236 0.764 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.106 0.894 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.100 -27.884 13.938 31.588 hybrid contribution 1.656 1.059 1.008 2.209 sum 6.757 -26.825 14.945 31.442 Atomic orbital electron populations 1.21843 0.95780 1.01577 1.02086 1.21485 0.96076 0.95863 1.01910 1.21925 0.97168 0.97008 0.99045 0.90297 1.22275 1.01832 1.00643 0.96935 1.22338 0.92461 0.89508 1.02578 1.62436 1.48484 1.02022 1.12083 1.23290 1.02248 0.96576 0.91132 1.22677 0.93921 0.90279 0.94857 1.88111 1.68085 1.49812 1.22797 1.21782 0.95825 0.91790 0.83813 1.22279 0.96655 1.02465 1.01253 1.21169 0.95614 0.83125 0.98737 1.45899 1.22353 1.12763 1.57551 1.20290 0.85343 0.85528 0.77027 1.90697 1.19865 1.80446 1.48536 1.23518 1.05175 0.95972 1.05628 1.85380 1.23166 1.07846 1.67045 1.22920 1.06037 0.98628 1.40628 0.90876 1.24997 0.95285 0.98698 0.94688 1.70030 1.16362 1.30788 1.33146 0.86115 0.79706 0.81680 0.77979 1.19622 1.20594 1.20598 1.22765 0.95346 0.93055 0.98885 0.92466 0.92636 0.92822 0.92118 0.91889 0.92630 0.91715 0.92127 0.90909 0.90428 0.91651 0.90022 0.88578 0.92113 0.90782 0.91343 0.92062 0.90168 0.91011 0.76434 0.89214 0.89275 0.92279 0.89418 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.70 37.15 0.36 -0.51 16 2 C -0.12 -0.61 5.40 -26.73 -0.14 -0.75 16 3 C -0.13 -0.78 1.86 -90.62 -0.17 -0.95 16 4 H 0.08 0.55 6.18 -51.93 -0.32 0.23 16 5 C -0.16 -1.00 7.37 37.16 0.27 -0.72 16 6 C 0.06 0.35 5.24 -3.82 -0.02 0.33 16 7 N -0.53 -3.77 4.30 -234.31 -1.01 -4.78 16 8 C 0.00 -0.03 5.10 -3.71 -0.02 -0.05 16 9 C 0.06 0.46 6.61 37.21 0.25 0.71 16 10 O -0.37 -3.91 10.23 -35.23 -0.36 -4.27 16 11 C 0.11 1.04 0.78 -90.57 -0.07 0.97 16 12 C -0.17 -1.50 7.94 37.16 0.30 -1.21 16 13 C 0.14 1.72 4.85 -4.04 -0.02 1.70 16 14 N -0.73 -10.48 5.19 -60.29 -0.31 -10.80 16 15 C 0.53 10.29 7.85 -10.99 -0.09 10.21 16 16 O -0.52 -12.10 15.86 5.55 0.09 -12.01 16 17 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.03 0.23 3.11 -3.71 -0.01 0.22 16 28 H 0.06 0.33 6.31 -51.93 -0.33 0.00 16 29 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 7.72 -51.93 -0.40 -0.08 16 34 H 0.06 0.49 4.75 -51.93 -0.25 0.24 16 35 H 0.06 0.38 6.04 -51.93 -0.31 0.07 16 36 H 0.07 0.39 7.75 -51.93 -0.40 -0.01 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 4.03 -51.93 -0.21 0.26 16 39 H 0.08 0.46 8.01 -51.93 -0.42 0.04 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.46 6.50 -51.93 -0.34 0.12 16 42 H 0.07 0.63 6.13 -51.93 -0.32 0.31 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.56 6.59 -51.93 -0.34 0.22 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.40 4.91 7.00 -40.82 -0.29 4.62 16 48 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 49 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 50 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.06 0.50 5.02 -51.93 -0.26 0.24 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -34.10 403.02 -9.76 -43.87 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.80 Total: 1.03 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 1.05 Total: -6.14 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.59 Total: -41.29 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.27 Total: -16.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.10 -9.76 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107753535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.206 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds