Wall clock time and date at job start Wed Apr 1 2020 03:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 H 1.08998 * 109.46687 * 305.00015 * 3 2 1 5 5 C 1.53003 * 109.46994 * 64.99592 * 3 2 1 6 6 C 1.52999 * 109.47303 * 184.99459 * 3 2 1 7 7 N 1.46902 * 109.47117 * 176.21330 * 6 3 2 8 8 C 1.47014 * 110.99967 * 83.45984 * 7 6 3 9 9 C 1.53097 * 109.25570 * 177.60845 * 8 7 6 10 10 O 1.43011 * 109.26060 * 56.85072 * 9 8 7 11 11 C 1.43018 * 113.73903 * 301.33159 * 10 9 8 12 12 C 1.53007 * 109.50478 * 298.73259 * 11 10 9 13 13 C 1.53001 * 109.50653 * 178.64749 * 11 10 9 14 14 N 1.46502 * 109.47032 * 64.99986 * 13 11 10 15 15 C 1.34781 * 119.99790 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99916 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00152 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47407 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00274 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99644 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00027 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47075 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47164 * 119.99477 * 23 21 19 26 26 H 1.48496 * 109.47265 * 239.99919 * 23 21 19 27 27 C 1.47017 * 110.99674 * 319.82801 * 7 6 3 28 28 H 1.09002 * 109.47703 * 300.00304 * 1 2 3 29 29 H 1.09008 * 109.47104 * 60.00390 * 1 2 3 30 30 H 1.09000 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47104 * 119.99610 * 2 1 3 32 32 H 1.09002 * 109.47703 * 239.99696 * 2 1 3 33 33 H 1.09001 * 109.46999 * 74.27014 * 5 3 2 34 34 H 1.09004 * 109.47156 * 194.26790 * 5 3 2 35 35 H 1.09001 * 109.47187 * 314.27269 * 5 3 2 36 36 H 1.08991 * 109.47608 * 296.21207 * 6 3 2 37 37 H 1.09006 * 109.46672 * 56.21646 * 6 3 2 38 38 H 1.08998 * 109.50494 * 297.54471 * 8 7 6 39 39 H 1.08997 * 109.50496 * 57.67994 * 8 7 6 40 40 H 1.09000 * 109.50786 * 176.78862 * 9 8 7 41 41 H 1.09006 * 109.50624 * 296.87348 * 9 8 7 42 42 H 1.08993 * 109.46874 * 59.99931 * 12 11 10 43 43 H 1.08997 * 109.46948 * 180.02562 * 12 11 10 44 44 H 1.08996 * 109.46983 * 299.99817 * 12 11 10 45 45 H 1.09006 * 109.47090 * 184.99557 * 13 11 10 46 46 H 1.08996 * 109.47454 * 304.99487 * 13 11 10 47 47 H 0.96992 * 120.00019 * 359.97438 * 14 13 11 48 48 H 1.09006 * 109.47282 * 300.00668 * 17 15 14 49 49 H 1.09007 * 109.47113 * 60.00476 * 17 15 14 50 50 H 0.97000 * 119.99960 * 180.02562 * 22 21 19 51 51 H 1.09002 * 109.50700 * 302.32253 * 27 7 6 52 52 H 1.08995 * 109.51228 * 62.46213 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4443 -0.1256 7 7 4.0470 2.8290 -0.2168 8 6 4.1846 3.4280 1.1187 9 6 4.7446 4.8462 0.9807 10 8 3.8868 5.6114 0.1299 11 6 3.7306 5.0569 -1.1791 12 6 5.0912 5.0042 -1.8772 13 6 2.7725 5.9294 -1.9926 14 7 3.3718 7.2500 -2.2004 15 6 2.7036 8.1913 -2.8961 16 8 1.6060 7.9452 -3.3497 17 6 3.3197 9.5499 -3.1094 18 16 2.1863 10.5821 -4.0719 19 6 3.1318 12.0657 -4.1695 20 1 4.1045 12.1179 -3.7032 21 6 2.6259 13.1679 -4.8448 22 7 1.4401 13.1044 -5.4126 23 14 3.6278 14.7410 -4.9477 24 1 4.9159 14.5552 -4.2324 25 1 3.8945 15.0658 -6.3720 26 1 2.8696 15.8528 -4.3200 27 6 3.1603 3.6409 -1.0630 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.2596 1.7556 2.1201 34 1 1.7679 3.2041 1.2099 35 1 0.5895 1.9074 1.5235 36 1 4.0021 0.9643 0.7498 37 1 3.8561 0.8983 -1.0229 38 1 3.2085 3.4675 1.6022 39 1 4.8651 2.8249 1.7197 40 1 4.7948 5.3149 1.9635 41 1 5.7436 4.8024 0.5469 42 1 5.7727 4.3813 -1.2980 43 1 4.9714 4.5819 -2.8749 44 1 5.4983 6.0121 -1.9561 45 1 2.5844 5.4598 -2.9581 46 1 1.8323 6.0381 -1.4521 47 1 4.2494 7.4469 -1.8373 48 1 3.5072 10.0196 -2.1438 49 1 4.2604 9.4416 -3.6495 50 1 1.0867 13.8745 -5.8849 51 1 3.0932 3.1931 -2.0546 52 1 2.1679 3.6839 -0.6144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107753535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:26 Heat of formation + Delta-G solvation = -102.894718 kcal Electronic energy + Delta-G solvation = -28768.728769 eV Core-core repulsion = 24893.601480 eV Total energy + Delta-G solvation = -3875.127289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64352 -40.44955 -38.63953 -36.15362 -35.30090 -34.58146 -33.42744 -30.92224 -30.84942 -29.75103 -28.36519 -27.74279 -26.96510 -26.13404 -23.96627 -22.64067 -21.73286 -20.90638 -20.21815 -19.84238 -18.06184 -17.72652 -17.34651 -16.88277 -16.81834 -16.59971 -16.31483 -16.21626 -15.92398 -15.85890 -15.33594 -15.01103 -14.75935 -14.47660 -14.45488 -14.37362 -14.12735 -13.76438 -13.40694 -13.28182 -13.15415 -13.09324 -12.90549 -12.80467 -12.74794 -12.60595 -12.52478 -12.38550 -12.28717 -12.11339 -11.79520 -11.69340 -11.47195 -11.41213 -11.26328 -11.15409 -10.97771 -10.55262 -10.27086 -10.13582 -9.11577 -8.66125 -8.34350 -6.12245 1.27082 1.41891 1.47098 1.58655 1.61413 2.23090 2.28477 2.67612 2.90436 2.99726 3.32831 3.68441 3.72876 3.79649 3.88833 3.91803 4.00446 4.00881 4.12277 4.26033 4.29107 4.37715 4.42624 4.48993 4.51100 4.54723 4.60041 4.63284 4.64954 4.68517 4.69852 4.78874 4.83055 4.87380 4.95297 5.00525 5.04543 5.10541 5.14095 5.19647 5.21858 5.33782 5.39459 5.42820 5.43429 5.50254 5.97724 6.06013 6.20706 6.23669 6.48021 7.06961 7.22536 8.75179 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.001930 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.218365 B =14505.468755 C =15231.321947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.127 4.127 4 H 0.066 0.934 5 C -0.156 4.156 6 C 0.062 3.938 7 N -0.528 5.528 8 C -0.003 4.003 9 C 0.055 3.945 10 O -0.391 6.391 11 C 0.116 3.884 12 C -0.164 4.164 13 C 0.137 3.863 14 N -0.705 5.705 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.129 4.129 18 S -0.149 6.149 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.033 3.967 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.414 0.586 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.271 0.729 51 H 0.091 0.909 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 -28.589 16.254 34.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.147 4.147 4 H 0.084 0.916 5 C -0.212 4.212 6 C -0.066 4.066 7 N -0.251 5.251 8 C -0.131 4.131 9 C -0.021 4.021 10 O -0.311 6.311 11 C 0.076 3.924 12 C -0.222 4.222 13 C 0.012 3.988 14 N -0.360 5.360 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.280 4.280 18 S 0.078 5.922 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.095 4.095 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.252 0.748 48 H 0.125 0.875 49 H 0.129 0.871 50 H 0.080 0.920 51 H 0.110 0.890 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.672 -28.783 15.270 33.474 hybrid contribution 0.882 1.198 0.697 1.643 sum 8.555 -27.585 15.967 33.001 Atomic orbital electron populations 1.21850 0.96190 1.01780 1.01574 1.21457 0.95676 0.95412 1.02424 1.21858 0.97276 0.97233 0.98319 0.91608 1.22226 1.01864 0.99757 0.97391 1.22361 0.92240 0.88764 1.03239 1.62452 1.48040 1.02397 1.12192 1.23307 1.02446 0.96288 0.91059 1.22862 0.93651 0.90694 0.94901 1.88072 1.68922 1.50870 1.23203 1.21639 0.95567 0.91700 0.83494 1.22241 0.96033 1.02516 1.01383 1.21301 0.95843 0.82297 0.99348 1.45662 1.22321 1.12542 1.55427 1.20053 0.84859 0.85729 0.77356 1.90686 1.21830 1.81125 1.50823 1.23359 1.03885 0.95528 1.05237 1.85553 1.27170 1.10197 1.69312 1.23244 1.06313 0.98894 1.40904 0.89928 1.26146 0.96463 1.02722 0.93929 1.70190 1.18398 1.32124 1.34063 0.84886 0.78261 0.76341 0.78332 1.18050 1.19847 1.19944 1.22657 0.95074 0.92407 0.99406 0.92703 0.93447 0.92265 0.91398 0.91517 0.91792 0.93081 0.92433 0.89811 0.90131 0.92001 0.88327 0.87461 0.91617 0.90000 0.91088 0.92267 0.89938 0.92539 0.74821 0.87502 0.87120 0.91988 0.89022 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.70 71.98 0.70 -0.95 16 2 C -0.11 -1.03 5.40 30.59 0.17 -0.86 16 3 C -0.13 -1.36 1.86 -10.79 -0.02 -1.38 16 4 H 0.07 0.89 6.18 -2.39 -0.01 0.87 16 5 C -0.16 -1.79 7.37 71.98 0.53 -1.26 16 6 C 0.06 0.60 5.24 86.30 0.45 1.06 16 7 N -0.53 -6.54 4.30 -895.22 -3.85 -10.39 16 8 C 0.00 -0.04 5.10 86.31 0.44 0.40 16 9 C 0.06 0.75 6.61 72.01 0.48 1.22 16 10 O -0.39 -7.74 10.23 -148.98 -1.52 -9.26 16 11 C 0.12 2.11 0.78 -10.76 -0.01 2.10 16 12 C -0.16 -2.60 7.94 71.98 0.57 -2.03 16 13 C 0.14 3.34 4.85 86.38 0.42 3.76 16 14 N -0.71 -19.58 5.19 -463.05 -2.40 -21.98 16 15 C 0.53 20.61 7.85 87.65 0.69 21.30 16 16 O -0.57 -26.99 15.86 -3.06 -0.05 -27.04 16 17 C -0.13 -5.29 6.16 71.23 0.44 -4.86 16 18 S -0.15 -8.46 20.57 -56.49 -1.16 -9.63 16 19 C -0.55 -31.63 9.50 67.96 0.65 -30.98 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 23 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 C 0.03 0.51 3.11 86.31 0.27 0.78 16 28 H 0.05 0.59 6.31 -2.39 -0.02 0.58 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.62 7.72 -2.39 -0.02 0.60 16 34 H 0.05 0.74 4.75 -2.38 -0.01 0.73 16 35 H 0.06 0.69 6.04 -2.39 -0.01 0.68 16 36 H 0.08 0.67 7.75 -2.39 -0.02 0.65 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.06 0.78 4.03 -2.39 -0.01 0.77 16 39 H 0.10 0.82 8.01 -2.39 -0.02 0.80 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 0.83 6.50 -2.38 -0.02 0.81 16 42 H 0.08 1.19 6.13 -2.39 -0.01 1.18 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 0.95 6.59 -2.39 -0.02 0.94 16 45 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.41 9.37 7.00 -92.71 -0.65 8.72 16 48 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 49 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 50 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 51 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.05 0.84 5.02 -2.39 -0.01 0.82 16 Total: -1.00 -75.16 403.02 -0.18 -75.34 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.27 Total: 23.61 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 6.23 Total: -10.52 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -5.97 Total: -88.63 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.57 Total: -36.30 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -75.16 -0.18 -75.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107753535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.555 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds