Wall clock time and date at job start Wed Apr 1 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46910 * 2 1 4 4 H 1.09003 * 109.46744 * 304.99243 * 3 2 1 5 5 O 1.42895 * 109.47411 * 64.99433 * 3 2 1 6 6 C 1.35903 * 117.00301 * 261.09372 * 5 3 2 7 7 C 1.38752 * 120.05267 * 5.11037 * 6 5 3 8 8 C 1.38121 * 119.93991 * 179.70210 * 7 6 5 9 9 C 1.38289 * 120.05850 * 0.59620 * 8 7 6 10 10 C 1.38244 * 120.10817 * 359.67489 * 9 8 7 11 11 C 1.50698 * 119.97315 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.05639 * 0.02715 * 10 9 8 13 13 C 1.50705 * 109.46943 * 184.99907 * 3 2 1 14 14 O 1.21282 * 119.99450 * 244.99884 * 13 3 2 15 15 N 1.34774 * 120.00306 * 64.99737 * 13 3 2 16 16 C 1.46493 * 120.00283 * 180.27648 * 15 13 3 17 17 H 1.09008 * 115.51368 * 350.30371 * 16 15 13 18 18 C 1.52997 * 117.44538 * 204.89434 * 16 15 13 19 19 H 1.09001 * 119.53978 * 4.11263 * 18 16 15 20 20 C 1.54389 * 118.12387 * 159.21022 * 18 16 15 21 21 N 1.48147 * 104.61770 * 87.18994 * 20 18 16 22 22 C 1.36937 * 127.83592 * 140.41146 * 21 20 18 23 23 H 1.08003 * 119.99869 * 194.65874 * 22 21 20 24 24 C 1.38814 * 119.99985 * 14.66529 * 22 21 20 25 25 N 1.31617 * 120.00197 * 9.54886 * 24 22 21 26 26 Si 1.86806 * 119.99742 * 189.55051 * 24 22 21 27 27 H 1.48494 * 109.47362 * 89.99617 * 26 24 22 28 28 H 1.48495 * 109.46804 * 210.00064 * 26 24 22 29 29 H 1.48498 * 109.46812 * 329.99624 * 26 24 22 30 30 C 1.48144 * 104.32448 * 320.41455 * 21 20 18 31 31 C 1.52994 * 117.44593 * 135.72219 * 16 15 13 32 32 H 1.09001 * 119.54191 * 355.88161 * 31 16 15 33 33 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47478 * 300.00281 * 1 2 3 35 35 H 1.09008 * 109.47158 * 60.00520 * 1 2 3 36 36 H 1.08993 * 109.47236 * 239.99664 * 2 1 3 37 37 H 1.08995 * 109.46956 * 119.99591 * 2 1 3 38 38 H 1.08003 * 120.03056 * 359.97070 * 7 6 5 39 39 H 1.08000 * 119.97214 * 180.28975 * 8 7 6 40 40 H 1.07997 * 119.94611 * 179.70330 * 9 8 7 41 41 H 1.09001 * 109.47633 * 270.02944 * 11 10 9 42 42 H 1.09007 * 109.47062 * 30.02361 * 11 10 9 43 43 H 1.08995 * 109.47228 * 150.02322 * 11 10 9 44 44 H 1.07998 * 120.02786 * 179.97438 * 12 10 9 45 45 H 0.97009 * 119.99564 * 359.97438 * 15 13 3 46 46 H 1.09004 * 110.40426 * 205.97581 * 20 18 16 47 47 H 1.08996 * 110.40853 * 328.28472 * 20 18 16 48 48 H 0.96993 * 119.99870 * 180.02562 * 25 24 22 49 49 H 1.08994 * 110.40720 * 158.36781 * 30 21 20 50 50 H 1.09000 * 110.40672 * 280.80073 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6618 2.0815 1.2209 6 6 0.5602 2.8766 1.1858 7 6 -0.2033 2.9554 0.0300 8 6 -1.3259 3.7595 -0.0012 9 6 -1.6822 4.4950 1.1144 10 6 -0.9200 4.4225 2.2654 11 6 -1.3114 5.2249 3.4794 12 6 0.2005 3.6149 2.3036 13 6 3.5419 1.4444 -0.1238 14 8 4.2249 1.8612 0.7876 15 7 4.1261 0.9828 -1.2473 16 6 5.5862 0.9789 -1.3652 17 1 6.1221 1.5120 -0.5798 18 6 6.1800 1.0172 -2.7747 19 1 5.5171 1.1137 -3.6346 20 6 7.6380 1.4982 -2.9375 21 7 8.4573 0.2783 -2.7495 22 6 9.5813 -0.0930 -3.4379 23 1 9.9469 -1.1068 -3.3684 24 6 10.2509 0.8339 -4.2250 25 7 9.9228 2.1071 -4.1655 26 14 11.6176 0.2740 -5.3688 27 1 11.0442 -0.0677 -6.6953 28 1 12.6107 1.3668 -5.5254 29 1 12.2844 -0.9223 -4.7948 30 6 7.7846 -0.4489 -1.6480 31 6 6.2440 -0.2771 -1.9401 32 1 5.6288 -1.1449 -2.1781 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3634 0.5138 -0.8901 36 1 1.8933 -0.5138 -0.8899 37 1 1.8933 -0.5137 0.8900 38 1 0.0775 2.3852 -0.8433 39 1 -1.9232 3.8176 -0.8991 40 1 -2.5577 5.1268 1.0864 41 1 -0.8301 6.2021 3.4398 42 1 -2.3937 5.3535 3.4965 43 1 -0.9936 4.6997 4.3800 44 1 0.7959 3.5589 3.2029 45 1 3.5797 0.6490 -1.9760 46 1 7.7931 1.9104 -3.9346 47 1 7.8800 2.2415 -2.1779 48 1 10.3905 2.7547 -4.7158 49 1 8.0503 -1.5057 -1.6722 50 1 8.0502 -0.0112 -0.6857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114956487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:49 Heat of formation + Delta-G solvation = 13.824488 kcal Electronic energy + Delta-G solvation = -29428.219049 eV Core-core repulsion = 25422.709134 eV Total energy + Delta-G solvation = -4005.509916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01937 -39.69095 -38.49955 -37.58109 -34.67884 -34.03535 -32.84687 -32.53662 -30.54490 -30.30441 -27.78731 -27.30840 -27.03440 -25.54528 -22.95003 -22.79414 -22.43648 -21.16079 -20.52947 -19.96536 -19.32211 -18.51305 -17.48183 -16.84494 -16.43924 -16.23191 -15.89714 -15.78844 -14.85690 -14.74134 -14.64427 -14.35285 -14.14867 -13.86431 -13.64015 -13.49650 -13.29946 -13.15364 -12.77187 -12.68239 -12.38823 -12.36559 -12.27228 -12.10865 -11.89145 -11.55958 -11.52064 -11.48709 -11.17701 -11.01457 -10.85603 -10.82279 -10.39079 -10.25018 -10.16333 -9.78955 -9.73128 -9.26456 -9.08164 -8.77257 -8.41491 -8.38811 -6.90798 -5.81771 -3.16025 1.01343 1.16500 2.41080 2.47560 3.33664 3.37860 3.42390 3.44489 3.46111 4.20389 4.29331 4.36932 4.42930 4.46194 4.51880 4.56792 4.72955 4.83376 4.95341 5.00451 5.04508 5.11900 5.20256 5.26036 5.28008 5.33098 5.36741 5.40467 5.51599 5.54288 5.58267 5.67560 5.70143 5.78118 5.82623 5.83818 6.04183 6.08781 6.12622 6.17688 6.29060 6.45812 6.48553 6.66102 6.73314 6.85541 7.11708 7.31874 7.45858 7.50770 7.69241 8.15476 8.17748 9.08480 9.71247 10.47602 11.32417 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.001865 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.719277 B =15009.917207 C =15381.945075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.066 3.934 4 H 0.103 0.897 5 O -0.280 6.280 6 C 0.138 3.862 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.162 4.162 10 C -0.048 4.048 11 C -0.115 4.115 12 C -0.152 4.152 13 C 0.514 3.486 14 O -0.514 6.514 15 N -0.693 5.693 16 C 0.093 3.907 17 H 0.133 0.867 18 C -0.178 4.178 19 H 0.101 0.899 20 C 0.184 3.816 21 N -0.593 5.593 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.006 4.006 25 N -0.915 5.915 26 Si 0.914 3.086 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.157 3.843 31 C -0.184 4.184 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.398 0.602 46 H 0.093 0.907 47 H 0.026 0.974 48 H 0.255 0.745 49 H 0.051 0.949 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.342 0.992 8.857 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.006 3.994 4 H 0.121 0.879 5 O -0.192 6.192 6 C 0.092 3.908 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.180 4.180 10 C -0.048 4.048 11 C -0.172 4.172 12 C -0.170 4.170 13 C 0.298 3.702 14 O -0.388 6.388 15 N -0.344 5.344 16 C -0.012 4.012 17 H 0.150 0.850 18 C -0.200 4.200 19 H 0.119 0.881 20 C 0.058 3.942 21 N -0.316 5.316 22 C -0.355 4.355 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.561 5.561 26 Si 0.744 3.256 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.030 3.970 31 C -0.205 4.205 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.232 0.768 46 H 0.111 0.889 47 H 0.044 0.956 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -26.473 1.352 9.549 28.175 hybrid contribution 0.246 -0.490 -1.386 1.490 sum -26.228 0.862 8.163 27.482 Atomic orbital electron populations 1.21937 0.94365 1.02583 1.02426 1.21979 0.97388 0.93770 1.04401 1.22390 0.93133 0.95487 0.88383 0.87945 1.86224 1.41920 1.58701 1.32395 1.19048 0.86559 0.90698 0.94475 1.21343 0.98753 1.05398 0.98257 1.20900 0.95551 0.94756 0.98168 1.20935 1.01385 1.02380 0.93290 1.19713 0.93641 0.95661 0.95758 1.20819 1.01820 0.99532 0.95035 1.20319 0.99137 0.99343 0.98231 1.20175 0.89058 0.78218 0.82726 1.90753 1.64618 1.44872 1.38511 1.45287 1.07127 1.64201 1.17737 1.21922 0.78512 1.01899 0.98899 0.84990 1.24628 1.01040 1.01956 0.92330 0.88053 1.21092 0.82086 0.88747 1.02289 1.45126 1.28123 1.21691 1.36641 1.19003 1.00409 0.94795 1.21313 0.90431 1.24897 0.98993 0.95072 1.01351 1.69890 1.43843 1.00196 1.42192 0.86091 0.81190 0.77502 0.80816 1.21519 1.21636 1.20512 1.21712 0.87049 0.96516 0.91692 1.25095 0.98655 0.91650 1.05125 0.87497 0.91807 0.91928 0.92265 0.89653 0.89835 0.85076 0.85779 0.86014 0.90785 0.91316 0.91251 0.85085 0.76769 0.88906 0.95582 0.93496 0.93074 0.95104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.48 37.16 0.31 -0.76 16 2 C -0.14 -1.13 5.61 -26.73 -0.15 -1.28 16 3 C 0.07 0.71 2.54 -27.88 -0.07 0.64 16 4 H 0.10 0.87 5.43 -51.93 -0.28 0.59 16 5 O -0.28 -3.62 9.12 -39.29 -0.36 -3.98 16 6 C 0.14 1.54 5.63 -39.22 -0.22 1.32 16 7 C -0.22 -1.98 7.33 -39.43 -0.29 -2.27 16 8 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 9 C -0.16 -1.29 9.70 -39.56 -0.38 -1.67 16 10 C -0.05 -0.41 5.88 -104.65 -0.62 -1.03 16 11 C -0.12 -0.71 10.01 36.00 0.36 -0.34 16 12 C -0.15 -1.60 9.64 -39.43 -0.38 -1.98 16 13 C 0.51 7.36 7.18 -10.98 -0.08 7.28 16 14 O -0.51 -9.85 16.07 -14.30 -0.23 -10.08 16 15 N -0.69 -8.97 5.46 -53.81 -0.29 -9.27 16 16 C 0.09 1.55 5.92 -67.94 -0.40 1.15 16 17 H 0.13 2.55 7.40 -51.92 -0.38 2.16 16 18 C -0.18 -3.28 6.97 -89.30 -0.62 -3.91 16 19 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 20 C 0.18 4.39 5.72 -2.41 -0.01 4.38 16 21 N -0.59 -15.09 3.38 -166.70 -0.56 -15.66 16 22 C -0.23 -6.28 10.36 -15.06 -0.16 -6.44 16 23 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 24 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 25 N -0.92 -26.69 10.83 55.49 0.60 -26.09 16 26 Si 0.91 21.80 29.56 -169.99 -5.03 16.78 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.16 3.30 7.10 -0.54 0.00 3.30 16 31 C -0.18 -3.18 7.33 -87.43 -0.64 -3.83 16 32 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.52 6.50 -51.93 -0.34 0.18 16 35 H 0.06 0.34 6.72 -51.92 -0.35 -0.01 16 36 H 0.09 0.55 7.77 -51.93 -0.40 0.15 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.13 0.96 4.28 -52.48 -0.22 0.74 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 43 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.40 3.79 8.53 -40.82 -0.35 3.44 16 46 H 0.09 2.46 6.46 -51.93 -0.34 2.12 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -33.61 401.33 -11.37 -44.98 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.70 Total: 3.97 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.84 Total: -6.70 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.26 Total: -51.01 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.59 Total: -14.06 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.61 -11.37 -44.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114956487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.804 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds