Wall clock time and date at job start Wed Apr 1 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46910 * 2 1 4 4 H 1.09003 * 109.46744 * 304.99243 * 3 2 1 5 5 O 1.42895 * 109.47411 * 64.99433 * 3 2 1 6 6 C 1.35903 * 117.00301 * 261.09372 * 5 3 2 7 7 C 1.38752 * 120.05267 * 5.11037 * 6 5 3 8 8 C 1.38121 * 119.93991 * 179.70210 * 7 6 5 9 9 C 1.38289 * 120.05850 * 0.59620 * 8 7 6 10 10 C 1.38244 * 120.10817 * 359.67489 * 9 8 7 11 11 C 1.50698 * 119.97315 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.05639 * 0.02715 * 10 9 8 13 13 C 1.50705 * 109.46943 * 184.99907 * 3 2 1 14 14 O 1.21282 * 119.99450 * 244.99884 * 13 3 2 15 15 N 1.34774 * 120.00306 * 64.99737 * 13 3 2 16 16 C 1.46493 * 120.00283 * 180.27648 * 15 13 3 17 17 H 1.09008 * 115.51368 * 350.30371 * 16 15 13 18 18 C 1.52997 * 117.44538 * 204.89434 * 16 15 13 19 19 H 1.09001 * 119.53978 * 4.11263 * 18 16 15 20 20 C 1.54389 * 118.12387 * 159.21022 * 18 16 15 21 21 N 1.48147 * 104.61770 * 87.18994 * 20 18 16 22 22 C 1.36937 * 127.83592 * 140.41146 * 21 20 18 23 23 H 1.08003 * 119.99869 * 194.65874 * 22 21 20 24 24 C 1.38814 * 119.99985 * 14.66529 * 22 21 20 25 25 N 1.31617 * 120.00197 * 9.54886 * 24 22 21 26 26 Si 1.86806 * 119.99742 * 189.55051 * 24 22 21 27 27 H 1.48494 * 109.47362 * 89.99617 * 26 24 22 28 28 H 1.48495 * 109.46804 * 210.00064 * 26 24 22 29 29 H 1.48498 * 109.46812 * 329.99624 * 26 24 22 30 30 C 1.48144 * 104.32448 * 320.41455 * 21 20 18 31 31 C 1.52994 * 117.44593 * 135.72219 * 16 15 13 32 32 H 1.09001 * 119.54191 * 355.88161 * 31 16 15 33 33 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47478 * 300.00281 * 1 2 3 35 35 H 1.09008 * 109.47158 * 60.00520 * 1 2 3 36 36 H 1.08993 * 109.47236 * 239.99664 * 2 1 3 37 37 H 1.08995 * 109.46956 * 119.99591 * 2 1 3 38 38 H 1.08003 * 120.03056 * 359.97070 * 7 6 5 39 39 H 1.08000 * 119.97214 * 180.28975 * 8 7 6 40 40 H 1.07997 * 119.94611 * 179.70330 * 9 8 7 41 41 H 1.09001 * 109.47633 * 270.02944 * 11 10 9 42 42 H 1.09007 * 109.47062 * 30.02361 * 11 10 9 43 43 H 1.08995 * 109.47228 * 150.02322 * 11 10 9 44 44 H 1.07998 * 120.02786 * 179.97438 * 12 10 9 45 45 H 0.97009 * 119.99564 * 359.97438 * 15 13 3 46 46 H 1.09004 * 110.40426 * 205.97581 * 20 18 16 47 47 H 1.08996 * 110.40853 * 328.28472 * 20 18 16 48 48 H 0.96993 * 119.99870 * 180.02562 * 25 24 22 49 49 H 1.08994 * 110.40720 * 158.36781 * 30 21 20 50 50 H 1.09000 * 110.40672 * 280.80073 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6618 2.0815 1.2209 6 6 0.5602 2.8766 1.1858 7 6 -0.2033 2.9554 0.0300 8 6 -1.3259 3.7595 -0.0012 9 6 -1.6822 4.4950 1.1144 10 6 -0.9200 4.4225 2.2654 11 6 -1.3114 5.2249 3.4794 12 6 0.2005 3.6149 2.3036 13 6 3.5419 1.4444 -0.1238 14 8 4.2249 1.8612 0.7876 15 7 4.1261 0.9828 -1.2473 16 6 5.5862 0.9789 -1.3652 17 1 6.1221 1.5120 -0.5798 18 6 6.1800 1.0172 -2.7747 19 1 5.5171 1.1137 -3.6346 20 6 7.6380 1.4982 -2.9375 21 7 8.4573 0.2783 -2.7495 22 6 9.5813 -0.0930 -3.4379 23 1 9.9469 -1.1068 -3.3684 24 6 10.2509 0.8339 -4.2250 25 7 9.9228 2.1071 -4.1655 26 14 11.6176 0.2740 -5.3688 27 1 11.0442 -0.0677 -6.6953 28 1 12.6107 1.3668 -5.5254 29 1 12.2844 -0.9223 -4.7948 30 6 7.7846 -0.4489 -1.6480 31 6 6.2440 -0.2771 -1.9401 32 1 5.6288 -1.1449 -2.1781 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3634 0.5138 -0.8901 36 1 1.8933 -0.5138 -0.8899 37 1 1.8933 -0.5137 0.8900 38 1 0.0775 2.3852 -0.8433 39 1 -1.9232 3.8176 -0.8991 40 1 -2.5577 5.1268 1.0864 41 1 -0.8301 6.2021 3.4398 42 1 -2.3937 5.3535 3.4965 43 1 -0.9936 4.6997 4.3800 44 1 0.7959 3.5589 3.2029 45 1 3.5797 0.6490 -1.9760 46 1 7.7931 1.9104 -3.9346 47 1 7.8800 2.2415 -2.1779 48 1 10.3905 2.7547 -4.7158 49 1 8.0503 -1.5057 -1.6722 50 1 8.0502 -0.0112 -0.6857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114956487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:47 Heat of formation + Delta-G solvation = -5.635893 kcal Electronic energy + Delta-G solvation = -29429.062915 eV Core-core repulsion = 25422.709134 eV Total energy + Delta-G solvation = -4006.353781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.90337 -40.85025 -39.79260 -38.52591 -36.17623 -35.05263 -34.06573 -33.42899 -32.13361 -31.18090 -28.87539 -28.65178 -27.87859 -27.38188 -23.89143 -23.53228 -23.46413 -22.40260 -22.03465 -21.03681 -20.84782 -19.28472 -18.88520 -18.45349 -17.61658 -16.98205 -16.83518 -16.67256 -16.63997 -15.79969 -15.59198 -15.50100 -15.24025 -14.95639 -14.74246 -14.64271 -14.48361 -14.12877 -13.82050 -13.74393 -13.37725 -13.33755 -13.26396 -13.03916 -12.93822 -12.88823 -12.71815 -12.70156 -12.47429 -12.14055 -12.08469 -11.99697 -11.91681 -11.84811 -11.70537 -11.48805 -10.98304 -10.83836 -10.71583 -9.78662 -9.73347 -9.12459 -8.95339 -7.92724 -5.29660 0.36803 0.47929 1.32632 1.43749 1.47246 1.49731 1.57857 2.39883 2.49008 2.80109 2.82662 3.25295 3.37756 3.56958 3.61625 3.69680 3.81027 3.91474 3.92774 3.94283 4.05159 4.16597 4.22085 4.28470 4.38179 4.40116 4.46468 4.50380 4.56386 4.72695 4.77368 4.82468 4.85440 4.88203 4.96712 4.97963 5.02336 5.09673 5.24502 5.25493 5.31047 5.36675 5.39131 5.42727 5.49499 5.50274 5.63603 5.66440 5.84968 6.14954 6.30848 6.47487 6.98777 7.07592 7.65801 8.43771 9.21016 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.001865 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.719277 B =15009.917207 C =15381.945075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.073 3.927 4 H 0.130 0.870 5 O -0.311 6.311 6 C 0.114 3.886 7 C -0.221 4.221 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.054 4.054 11 C -0.115 4.115 12 C -0.178 4.178 13 C 0.512 3.488 14 O -0.571 6.571 15 N -0.673 5.673 16 C 0.110 3.890 17 H 0.100 0.900 18 C -0.176 4.176 19 H 0.131 0.869 20 C 0.186 3.814 21 N -0.616 5.616 22 C -0.240 4.240 23 H 0.084 0.916 24 C -0.064 4.064 25 N -0.949 5.949 26 Si 0.983 3.017 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.267 1.267 30 C 0.147 3.853 31 C -0.160 4.160 32 H 0.147 0.853 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.421 0.579 46 H 0.062 0.938 47 H -0.008 1.008 48 H 0.250 0.750 49 H 0.064 0.936 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.500 -0.397 7.275 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.013 3.987 4 H 0.147 0.853 5 O -0.224 6.224 6 C 0.069 3.931 7 C -0.239 4.239 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.054 4.054 11 C -0.171 4.171 12 C -0.197 4.197 13 C 0.298 3.702 14 O -0.449 6.449 15 N -0.324 5.324 16 C 0.003 3.997 17 H 0.118 0.882 18 C -0.197 4.197 19 H 0.148 0.852 20 C 0.060 3.940 21 N -0.340 5.340 22 C -0.369 4.369 23 H 0.102 0.898 24 C -0.258 4.258 25 N -0.597 5.597 26 Si 0.811 3.189 27 H -0.209 1.209 28 H -0.223 1.223 29 H -0.192 1.192 30 C 0.021 3.979 31 C -0.181 4.181 32 H 0.164 0.836 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.010 0.990 48 H 0.059 0.941 49 H 0.082 0.918 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -29.690 -0.076 7.959 30.738 hybrid contribution 1.205 0.000 -0.777 1.434 sum -28.485 -0.076 7.182 29.377 Atomic orbital electron populations 1.21906 0.93060 1.03406 1.02447 1.22012 0.98406 0.91788 1.04807 1.22495 0.89975 0.97399 0.88823 0.85275 1.86180 1.43070 1.59508 1.33663 1.19286 0.86804 0.91314 0.95664 1.21548 0.98752 1.05688 0.97900 1.21299 0.95186 0.93731 0.99168 1.21308 1.01782 1.02281 0.92865 1.20022 0.93006 0.95280 0.97115 1.20870 1.02984 0.99255 0.94036 1.20488 1.00291 1.00742 0.98196 1.20966 0.90697 0.76649 0.81854 1.90736 1.66216 1.47351 1.40566 1.45006 1.05431 1.63678 1.18328 1.21418 0.80590 1.01023 0.96708 0.88199 1.24301 0.98348 1.02714 0.94313 0.85164 1.20829 0.85710 0.88097 0.99322 1.45423 1.28349 1.22411 1.37820 1.19411 1.01157 0.95138 1.21162 0.89798 1.25773 1.01696 0.95144 1.03151 1.70098 1.45144 1.01269 1.43160 0.85014 0.78105 0.77071 0.78740 1.20887 1.22284 1.19172 1.21853 0.89475 0.96590 0.89954 1.25009 0.96552 0.92684 1.03849 0.83575 0.90572 0.93705 0.90420 0.87065 0.91567 0.83273 0.82904 0.83612 0.90356 0.89520 0.91297 0.86314 0.74020 0.91983 0.98969 0.94081 0.91772 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.48 71.98 0.61 -1.04 16 2 C -0.13 -1.84 5.61 30.60 0.17 -1.67 16 3 C 0.07 1.44 2.54 29.85 0.08 1.51 16 4 H 0.13 1.81 5.43 -2.39 -0.01 1.80 16 5 O -0.31 -8.14 9.12 -73.47 -0.67 -8.81 16 6 C 0.11 2.52 5.63 22.50 0.13 2.65 16 7 C -0.22 -3.51 7.33 22.36 0.16 -3.35 16 8 C -0.08 -0.98 10.04 22.25 0.22 -0.76 16 9 C -0.16 -2.23 9.70 22.28 0.22 -2.01 16 10 C -0.05 -0.90 5.88 -19.88 -0.12 -1.01 16 11 C -0.12 -1.29 10.01 71.24 0.71 -0.58 16 12 C -0.18 -3.88 9.64 22.37 0.22 -3.66 16 13 C 0.51 14.28 7.18 87.66 0.63 14.91 16 14 O -0.57 -22.65 16.07 15.95 0.26 -22.39 16 15 N -0.67 -15.93 5.46 -442.55 -2.42 -18.34 16 16 C 0.11 3.56 5.92 44.99 0.27 3.83 16 17 H 0.10 4.01 7.40 -2.38 -0.02 4.00 16 18 C -0.18 -6.29 6.97 -9.94 -0.07 -6.36 16 19 H 0.13 3.95 8.14 -2.39 -0.02 3.93 16 20 C 0.19 9.23 5.72 86.53 0.49 9.73 16 21 N -0.62 -31.98 3.38 -681.31 -2.30 -34.28 16 22 C -0.24 -13.44 10.36 84.03 0.87 -12.57 16 23 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 24 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 25 N -0.95 -57.36 10.83 21.65 0.23 -57.12 16 26 Si 0.98 45.33 29.56 68.60 2.03 47.36 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 30 C 0.15 6.16 7.10 87.75 0.62 6.79 16 31 C -0.16 -5.21 7.33 -8.73 -0.06 -5.27 16 32 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.04 0.67 6.50 -2.39 -0.02 0.65 16 35 H 0.08 0.56 6.72 -2.38 -0.02 0.55 16 36 H 0.11 0.96 7.77 -2.39 -0.02 0.94 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.15 1.66 4.28 -2.91 -0.01 1.65 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.65 8.09 -2.38 -0.02 0.63 16 43 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 44 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.42 6.25 8.53 -92.70 -0.79 5.46 16 46 H 0.06 3.43 6.46 -2.39 -0.02 3.42 16 47 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 50 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -78.46 401.33 2.90 -75.56 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.16 Total: 20.10 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.61 Total: -2.06 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.49 Total: -109.75 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.41 Total: -31.21 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -78.46 2.90 -75.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114956487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.923 kcal (2) G-P(sol) polarization free energy of solvation -78.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds