Wall clock time and date at job start Wed Apr 1 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47012 * 2 1 4 4 H 1.08999 * 109.47222 * 305.76482 * 3 2 1 5 5 C 1.50699 * 109.47286 * 65.76903 * 3 2 1 6 6 O 1.21291 * 119.99667 * 28.53968 * 5 3 2 7 7 N 1.34771 * 120.00429 * 208.54054 * 5 3 2 8 8 C 1.46500 * 120.00246 * 185.06833 * 7 5 3 9 9 H 1.08997 * 115.49320 * 350.37835 * 8 7 5 10 10 C 1.53003 * 117.44091 * 204.99725 * 8 7 5 11 11 H 1.08996 * 119.54338 * 4.12485 * 10 8 7 12 12 C 1.54389 * 118.89629 * 161.25134 * 10 8 7 13 13 N 1.48150 * 104.61791 * 87.21535 * 12 10 8 14 14 C 1.36932 * 127.83864 * 140.39156 * 13 12 10 15 15 H 1.08001 * 119.99894 * 194.87342 * 14 13 12 16 16 C 1.38809 * 120.00046 * 14.87096 * 14 13 12 17 17 N 1.31616 * 120.00054 * 9.51588 * 16 14 13 18 18 Si 1.86799 * 119.99732 * 189.51320 * 16 14 13 19 19 H 1.48493 * 109.47442 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46817 * 120.00432 * 18 16 14 21 21 H 1.48502 * 109.47440 * 239.99779 * 18 16 14 22 22 C 1.48149 * 104.32182 * 320.41575 * 13 12 10 23 23 C 1.53005 * 117.44246 * 135.76094 * 8 7 5 24 24 H 1.09000 * 119.53688 * 355.88410 * 23 8 7 25 25 C 1.50700 * 109.47187 * 185.76781 * 3 2 1 26 26 C 1.38265 * 119.94657 * 299.72967 * 25 3 2 27 27 C 1.38148 * 120.05734 * 179.72370 * 26 25 3 28 28 C 1.38729 * 119.94013 * 0.54758 * 27 26 25 29 29 O 1.35908 * 120.05033 * 179.75038 * 28 27 26 30 30 C 1.42896 * 117.00363 * 359.97438 * 29 28 27 31 31 C 1.38731 * 119.89354 * 359.72196 * 28 27 26 32 32 C 1.38144 * 119.94026 * 0.02562 * 31 28 27 33 33 H 1.09005 * 109.46969 * 184.33944 * 1 2 3 34 34 H 1.08994 * 109.47090 * 304.34483 * 1 2 3 35 35 H 1.08996 * 109.46990 * 64.34424 * 1 2 3 36 36 H 1.08998 * 109.47135 * 239.99978 * 2 1 3 37 37 H 1.09000 * 109.47005 * 120.00069 * 2 1 3 38 38 H 0.97006 * 119.99886 * 5.06962 * 7 5 3 39 39 H 1.09000 * 110.40951 * 205.99705 * 12 10 8 40 40 H 1.09000 * 110.40757 * 328.43295 * 12 10 8 41 41 H 0.97004 * 119.99865 * 179.97438 * 17 16 14 42 42 H 1.09002 * 110.40681 * 280.80116 * 22 13 12 43 43 H 1.09002 * 110.50841 * 158.41968 * 22 13 12 44 44 H 1.08005 * 119.96864 * 0.02562 * 26 25 3 45 45 H 1.07999 * 120.02755 * 180.27215 * 27 26 25 46 46 H 1.09000 * 109.46923 * 300.00350 * 30 29 28 47 47 H 1.08998 * 109.47166 * 60.00015 * 30 29 28 48 48 H 1.08991 * 109.47006 * 180.02562 * 30 29 28 49 49 H 1.07992 * 120.02900 * 179.97438 * 31 28 27 50 50 H 1.08000 * 119.97398 * 180.02562 * 32 31 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5948 1.9852 -0.8339 5 6 1.6577 2.1105 1.2956 6 8 1.5263 1.4485 2.3035 7 7 1.4617 3.4433 1.3345 8 6 1.1995 4.1082 2.6133 9 1 1.0166 3.4444 3.4583 10 6 0.4305 5.4304 2.5759 11 1 0.0455 5.8016 1.6262 12 6 -0.2433 5.9384 3.8688 13 7 0.8135 6.7111 4.5624 14 6 0.6804 7.8903 5.2456 15 1 1.5561 8.4697 5.4984 16 6 -0.5799 8.3412 5.6131 17 7 -1.6263 7.5549 5.4748 18 14 -0.7908 10.0639 6.3039 19 1 0.5297 10.7409 6.3574 20 1 -1.7088 10.8384 5.4305 21 1 -1.3614 9.9820 7.6725 22 6 2.0469 5.9187 4.3487 23 6 1.9405 5.4174 2.8924 24 1 2.6804 5.7788 2.1782 25 6 3.5402 1.4449 -0.1428 26 6 4.3249 0.8174 0.8070 27 6 5.7001 0.8133 0.6754 28 6 6.2942 1.4494 -0.4050 29 8 7.6471 1.4511 -0.5340 30 6 8.3964 0.7790 0.4803 31 6 5.5049 2.0831 -1.3537 32 6 4.1299 2.0798 -1.2202 33 1 -0.3633 -1.0248 0.0778 34 1 -0.3633 0.5797 0.8484 35 1 -0.3633 0.4449 -0.9263 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 1.4943 3.9624 0.5157 39 1 -1.0893 6.5824 3.6288 40 1 -0.5662 5.0988 4.4843 41 1 -2.5070 7.8699 5.7320 42 1 2.0816 5.0760 5.0391 43 1 2.9298 6.5461 4.4712 44 1 3.8621 0.3258 1.6500 45 1 6.3124 0.3192 1.4152 46 1 8.1938 1.2397 1.4471 47 1 8.1065 -0.2713 0.5104 48 1 9.4605 0.8563 0.2572 49 1 5.9650 2.5793 -2.1953 50 1 3.5150 2.5727 -1.9587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115281044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:34 Heat of formation + Delta-G solvation = 4.508972 kcal Electronic energy + Delta-G solvation = -29743.841736 eV Core-core repulsion = 25737.927870 eV Total energy + Delta-G solvation = -4005.913867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.73739 -39.87296 -38.62404 -37.60306 -34.72321 -34.37929 -32.62295 -31.35497 -30.86054 -30.19623 -28.07393 -27.13857 -26.56633 -25.53239 -23.20692 -22.89892 -21.99503 -21.23436 -20.43326 -19.62711 -19.25362 -18.45215 -17.32487 -16.88659 -16.57783 -16.21577 -16.03979 -15.79842 -14.90883 -14.73517 -14.58543 -14.31007 -14.09907 -13.81914 -13.60608 -13.39273 -13.23718 -13.06087 -12.79959 -12.72373 -12.54900 -12.23209 -12.17676 -11.60417 -11.58373 -11.48996 -11.36773 -11.18016 -11.08574 -10.99906 -10.87200 -10.85047 -10.37007 -10.16616 -10.13226 -9.78196 -9.71602 -9.25434 -9.16168 -8.73460 -8.34870 -8.31899 -6.87496 -5.79928 -3.13770 1.06743 1.12507 2.64408 2.96587 3.13567 3.37840 3.43718 3.46318 3.50093 4.28856 4.45293 4.46097 4.50183 4.59822 4.68492 4.69899 4.81502 4.85728 4.99731 5.10264 5.12682 5.16406 5.18071 5.26465 5.38342 5.39095 5.41076 5.43568 5.57328 5.60532 5.78107 5.82887 5.84952 5.93517 5.97692 6.02619 6.12040 6.14046 6.18513 6.26134 6.35314 6.46433 6.53776 6.69812 6.82795 6.90882 7.08520 7.35695 7.53149 7.60896 7.71598 8.20123 8.30322 9.10748 9.73465 10.50356 11.34442 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.002362 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.620077 B =11851.309048 C =13312.616014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 C -0.061 4.061 4 H 0.095 0.905 5 C 0.526 3.474 6 O -0.535 6.535 7 N -0.695 5.695 8 C 0.100 3.900 9 H 0.131 0.869 10 C -0.180 4.180 11 H 0.101 0.899 12 C 0.186 3.814 13 N -0.593 5.593 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.157 3.843 23 C -0.186 4.186 24 H 0.101 0.899 25 C -0.114 4.114 26 C -0.062 4.062 27 C -0.205 4.205 28 C 0.127 3.873 29 O -0.319 6.319 30 C 0.027 3.973 31 C -0.152 4.152 32 C -0.071 4.071 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.025 0.975 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.051 0.949 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.131 0.869 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.469 -16.221 -16.741 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.141 4.141 3 C -0.082 4.082 4 H 0.114 0.886 5 C 0.312 3.688 6 O -0.411 6.411 7 N -0.343 5.343 8 C -0.006 4.006 9 H 0.148 0.852 10 C -0.201 4.201 11 H 0.119 0.881 12 C 0.060 3.940 13 N -0.316 5.316 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.030 3.970 23 C -0.208 4.208 24 H 0.119 0.881 25 C -0.115 4.115 26 C -0.080 4.080 27 C -0.224 4.224 28 C 0.081 3.919 29 O -0.232 6.232 30 C -0.068 4.068 31 C -0.170 4.170 32 C -0.089 4.089 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.118 0.882 49 H 0.149 0.851 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.341 -16.427 -16.006 26.533 hybrid contribution -0.046 1.128 0.069 1.131 sum 13.295 -15.299 -15.937 25.784 Atomic orbital electron populations 1.21819 0.95247 1.02230 1.02006 1.21428 0.96238 0.93370 1.03040 1.20298 0.92829 0.98596 0.96520 0.88628 1.20373 0.76137 0.81902 0.90391 1.90690 1.50782 1.63634 1.36002 1.45410 1.71698 1.07553 1.09654 1.21782 1.02919 0.88677 0.87203 0.85172 1.24668 0.95392 0.97729 1.02348 0.88112 1.21053 0.92379 0.94264 0.86323 1.45199 1.02759 1.23161 1.60529 1.19041 0.93092 0.94698 1.28554 0.90463 1.24892 0.96033 0.98845 1.00594 1.69907 0.98757 1.34709 1.52765 0.86038 0.77677 0.83711 0.78276 1.20374 1.21624 1.21670 1.21095 0.91431 0.94059 0.90417 1.24353 0.96061 0.99804 1.00566 0.88137 1.19329 0.93511 1.01933 0.96726 1.20940 0.92647 0.96468 0.97918 1.21239 0.96001 1.05594 0.99522 1.19081 0.82560 0.95641 0.94572 1.86060 1.15444 1.72854 1.48886 1.23069 0.96116 0.96623 0.91038 1.20372 0.92782 1.03776 1.00105 1.20854 0.93705 0.97331 0.97007 0.92354 0.92043 0.92875 0.91160 0.90429 0.76828 0.88954 0.95686 0.93579 0.95595 0.93055 0.85087 0.85367 0.92455 0.92609 0.88224 0.85092 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.78 37.16 0.36 -1.12 16 2 C -0.10 -0.97 4.84 -26.73 -0.13 -1.10 16 3 C -0.06 -0.60 2.36 -92.93 -0.22 -0.82 16 4 H 0.10 0.73 7.87 -51.93 -0.41 0.32 16 5 C 0.53 7.13 5.62 -10.99 -0.06 7.07 16 6 O -0.53 -9.15 14.97 5.55 0.08 -9.07 16 7 N -0.70 -9.37 5.56 -53.80 -0.30 -9.67 16 8 C 0.10 1.71 6.04 -67.93 -0.41 1.30 16 9 H 0.13 2.52 7.39 -51.93 -0.38 2.14 16 10 C -0.18 -3.42 7.03 -89.22 -0.63 -4.04 16 11 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 12 C 0.19 4.51 5.74 -2.41 -0.01 4.49 16 13 N -0.59 -15.34 3.38 -168.86 -0.57 -15.91 16 14 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 15 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 16 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 17 N -0.92 -26.88 10.84 55.49 0.60 -26.28 16 18 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.16 3.37 7.06 -2.41 -0.02 3.36 16 23 C -0.19 -3.39 7.03 -89.22 -0.63 -4.02 16 24 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 25 C -0.11 -1.15 4.77 -104.60 -0.50 -1.65 16 26 C -0.06 -0.67 8.86 -39.60 -0.35 -1.02 16 27 C -0.20 -2.07 9.04 -39.43 -0.36 -2.42 16 28 C 0.13 1.31 6.69 -39.22 -0.26 1.05 16 29 O -0.32 -3.13 10.50 -19.45 -0.20 -3.33 16 30 C 0.03 0.17 9.81 101.05 0.99 1.16 16 31 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 32 C -0.07 -0.62 9.66 -39.60 -0.38 -1.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.73 6.97 -51.93 -0.36 0.37 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.84 7.11 -51.93 -0.37 0.47 16 38 H 0.40 4.29 8.83 -40.82 -0.36 3.92 16 39 H 0.09 2.48 6.48 -51.93 -0.34 2.14 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.13 1.51 7.45 -52.48 -0.39 1.12 16 45 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 46 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 47 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 48 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 50 H 0.13 0.82 7.94 -52.49 -0.42 0.40 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -33.01 405.36 -10.48 -43.49 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.93 Total: 5.10 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.25 Total: -7.38 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.27 Total: -51.86 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.12 Total: -12.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.01 -10.48 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115281044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.997 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds