Wall clock time and date at job start Wed Apr 1 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47012 * 2 1 4 4 H 1.08999 * 109.47222 * 305.76482 * 3 2 1 5 5 C 1.50699 * 109.47286 * 65.76903 * 3 2 1 6 6 O 1.21291 * 119.99667 * 28.53968 * 5 3 2 7 7 N 1.34771 * 120.00429 * 208.54054 * 5 3 2 8 8 C 1.46500 * 120.00246 * 185.06833 * 7 5 3 9 9 H 1.08997 * 115.49320 * 350.37835 * 8 7 5 10 10 C 1.53003 * 117.44091 * 204.99725 * 8 7 5 11 11 H 1.08996 * 119.54338 * 4.12485 * 10 8 7 12 12 C 1.54389 * 118.89629 * 161.25134 * 10 8 7 13 13 N 1.48150 * 104.61791 * 87.21535 * 12 10 8 14 14 C 1.36932 * 127.83864 * 140.39156 * 13 12 10 15 15 H 1.08001 * 119.99894 * 194.87342 * 14 13 12 16 16 C 1.38809 * 120.00046 * 14.87096 * 14 13 12 17 17 N 1.31616 * 120.00054 * 9.51588 * 16 14 13 18 18 Si 1.86799 * 119.99732 * 189.51320 * 16 14 13 19 19 H 1.48493 * 109.47442 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46817 * 120.00432 * 18 16 14 21 21 H 1.48502 * 109.47440 * 239.99779 * 18 16 14 22 22 C 1.48149 * 104.32182 * 320.41575 * 13 12 10 23 23 C 1.53005 * 117.44246 * 135.76094 * 8 7 5 24 24 H 1.09000 * 119.53688 * 355.88410 * 23 8 7 25 25 C 1.50700 * 109.47187 * 185.76781 * 3 2 1 26 26 C 1.38265 * 119.94657 * 299.72967 * 25 3 2 27 27 C 1.38148 * 120.05734 * 179.72370 * 26 25 3 28 28 C 1.38729 * 119.94013 * 0.54758 * 27 26 25 29 29 O 1.35908 * 120.05033 * 179.75038 * 28 27 26 30 30 C 1.42896 * 117.00363 * 359.97438 * 29 28 27 31 31 C 1.38731 * 119.89354 * 359.72196 * 28 27 26 32 32 C 1.38144 * 119.94026 * 0.02562 * 31 28 27 33 33 H 1.09005 * 109.46969 * 184.33944 * 1 2 3 34 34 H 1.08994 * 109.47090 * 304.34483 * 1 2 3 35 35 H 1.08996 * 109.46990 * 64.34424 * 1 2 3 36 36 H 1.08998 * 109.47135 * 239.99978 * 2 1 3 37 37 H 1.09000 * 109.47005 * 120.00069 * 2 1 3 38 38 H 0.97006 * 119.99886 * 5.06962 * 7 5 3 39 39 H 1.09000 * 110.40951 * 205.99705 * 12 10 8 40 40 H 1.09000 * 110.40757 * 328.43295 * 12 10 8 41 41 H 0.97004 * 119.99865 * 179.97438 * 17 16 14 42 42 H 1.09002 * 110.40681 * 280.80116 * 22 13 12 43 43 H 1.09002 * 110.50841 * 158.41968 * 22 13 12 44 44 H 1.08005 * 119.96864 * 0.02562 * 26 25 3 45 45 H 1.07999 * 120.02755 * 180.27215 * 27 26 25 46 46 H 1.09000 * 109.46923 * 300.00350 * 30 29 28 47 47 H 1.08998 * 109.47166 * 60.00015 * 30 29 28 48 48 H 1.08991 * 109.47006 * 180.02562 * 30 29 28 49 49 H 1.07992 * 120.02900 * 179.97438 * 31 28 27 50 50 H 1.08000 * 119.97398 * 180.02562 * 32 31 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5948 1.9852 -0.8339 5 6 1.6577 2.1105 1.2956 6 8 1.5263 1.4485 2.3035 7 7 1.4617 3.4433 1.3345 8 6 1.1995 4.1082 2.6133 9 1 1.0166 3.4444 3.4583 10 6 0.4305 5.4304 2.5759 11 1 0.0455 5.8016 1.6262 12 6 -0.2433 5.9384 3.8688 13 7 0.8135 6.7111 4.5624 14 6 0.6804 7.8903 5.2456 15 1 1.5561 8.4697 5.4984 16 6 -0.5799 8.3412 5.6131 17 7 -1.6263 7.5549 5.4748 18 14 -0.7908 10.0639 6.3039 19 1 0.5297 10.7409 6.3574 20 1 -1.7088 10.8384 5.4305 21 1 -1.3614 9.9820 7.6725 22 6 2.0469 5.9187 4.3487 23 6 1.9405 5.4174 2.8924 24 1 2.6804 5.7788 2.1782 25 6 3.5402 1.4449 -0.1428 26 6 4.3249 0.8174 0.8070 27 6 5.7001 0.8133 0.6754 28 6 6.2942 1.4494 -0.4050 29 8 7.6471 1.4511 -0.5340 30 6 8.3964 0.7790 0.4803 31 6 5.5049 2.0831 -1.3537 32 6 4.1299 2.0798 -1.2202 33 1 -0.3633 -1.0248 0.0778 34 1 -0.3633 0.5797 0.8484 35 1 -0.3633 0.4449 -0.9263 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 1.4943 3.9624 0.5157 39 1 -1.0893 6.5824 3.6288 40 1 -0.5662 5.0988 4.4843 41 1 -2.5070 7.8699 5.7320 42 1 2.0816 5.0760 5.0391 43 1 2.9298 6.5461 4.4712 44 1 3.8621 0.3258 1.6500 45 1 6.3124 0.3192 1.4152 46 1 8.1938 1.2397 1.4471 47 1 8.1065 -0.2713 0.5104 48 1 9.4605 0.8563 0.2572 49 1 5.9650 2.5793 -2.1953 50 1 3.5150 2.5727 -1.9587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115281044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:33 Heat of formation + Delta-G solvation = -15.261847 kcal Electronic energy + Delta-G solvation = -29744.699063 eV Core-core repulsion = 25737.927870 eV Total energy + Delta-G solvation = -4006.771194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63206 -40.87083 -40.01903 -38.45433 -36.14099 -35.40683 -34.31308 -32.18527 -32.04909 -31.44543 -28.94664 -28.71647 -27.79325 -26.97812 -24.23594 -23.84773 -22.88726 -22.52940 -21.93301 -20.91458 -20.68315 -19.12541 -18.88424 -18.29899 -17.66531 -17.26536 -16.74463 -16.66175 -16.59486 -15.82216 -15.63795 -15.51789 -15.15623 -14.93061 -14.74298 -14.66370 -14.47356 -14.22676 -13.75772 -13.74452 -13.56473 -13.38089 -13.25314 -13.18070 -12.90456 -12.78443 -12.75766 -12.25362 -12.19521 -12.10269 -12.01800 -11.88984 -11.85652 -11.82031 -11.65753 -11.60041 -10.94031 -10.81779 -10.67526 -9.96029 -9.70516 -9.08454 -8.94863 -7.93078 -5.29928 0.35217 0.39000 1.46555 1.47189 1.56266 1.58642 1.99392 2.37923 2.47519 2.75132 2.83318 3.27240 3.56557 3.69820 3.71213 3.81414 3.84966 3.92099 3.94017 4.01895 4.13516 4.25793 4.31157 4.36631 4.37350 4.43044 4.46885 4.50517 4.56761 4.68368 4.73487 4.75193 4.80836 4.86800 4.89946 4.95794 5.08226 5.13129 5.25971 5.27894 5.29193 5.38447 5.39789 5.41939 5.44891 5.55138 5.62768 5.63269 5.79199 6.14790 6.42199 6.55404 6.98689 7.24940 7.65317 8.43700 9.20975 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.002362 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.620077 B =11851.309048 C =13312.616014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.049 4.049 4 H 0.131 0.869 5 C 0.524 3.476 6 O -0.576 6.576 7 N -0.683 5.683 8 C 0.122 3.878 9 H 0.103 0.897 10 C -0.178 4.178 11 H 0.126 0.874 12 C 0.189 3.811 13 N -0.616 5.616 14 C -0.241 4.241 15 H 0.083 0.917 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.293 1.293 22 C 0.150 3.850 23 C -0.171 4.171 24 H 0.131 0.869 25 C -0.121 4.121 26 C -0.079 4.079 27 C -0.214 4.214 28 C 0.115 3.885 29 O -0.334 6.334 30 C 0.019 3.981 31 C -0.159 4.159 32 C -0.062 4.062 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.417 0.583 39 H 0.061 0.939 40 H -0.006 1.006 41 H 0.250 0.750 42 H 0.016 0.984 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.146 0.854 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.976 -15.722 -19.696 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.070 4.070 4 H 0.149 0.851 5 C 0.312 3.688 6 O -0.454 6.454 7 N -0.333 5.333 8 C 0.015 3.985 9 H 0.121 0.879 10 C -0.199 4.199 11 H 0.144 0.856 12 C 0.063 3.937 13 N -0.340 5.340 14 C -0.369 4.369 15 H 0.101 0.899 16 C -0.257 4.257 17 N -0.596 5.596 18 Si 0.810 3.190 19 H -0.188 1.188 20 H -0.215 1.215 21 H -0.220 1.220 22 C 0.024 3.976 23 C -0.192 4.192 24 H 0.149 0.851 25 C -0.122 4.122 26 C -0.097 4.097 27 C -0.232 4.232 28 C 0.070 3.930 29 O -0.247 6.247 30 C -0.076 4.076 31 C -0.178 4.178 32 C -0.079 4.079 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.060 0.940 42 H 0.033 0.967 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.155 0.845 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.164 0.836 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.888 -15.941 -19.001 28.927 hybrid contribution -0.440 0.858 1.050 1.426 sum 14.448 -15.082 -17.950 27.540 Atomic orbital electron populations 1.21807 0.95290 1.02300 1.01714 1.21428 0.96108 0.93259 1.03090 1.20308 0.93045 0.98620 0.95067 0.85103 1.21140 0.74820 0.81481 0.91345 1.90684 1.52290 1.64489 1.37960 1.45253 1.71440 1.07747 1.08853 1.21285 1.01224 0.87661 0.88329 0.87948 1.24341 0.95339 0.99579 1.00620 0.85587 1.20784 0.91961 0.92571 0.88338 1.45501 1.04469 1.23225 1.60851 1.19434 0.93442 0.95582 1.28450 0.89939 1.25771 0.95756 1.02720 1.01470 1.70107 0.98969 1.36494 1.54050 0.84959 0.77983 0.79007 0.77019 1.18805 1.21511 1.21968 1.21219 0.90312 0.93544 0.92535 1.24241 0.95921 1.00306 0.98703 0.85103 1.19370 0.93260 1.02424 0.97167 1.20951 0.93235 0.97357 0.98132 1.21351 0.95879 1.05957 1.00060 1.19323 0.83043 0.95809 0.94822 1.86041 1.15332 1.73333 1.50038 1.23303 0.96900 0.96875 0.90473 1.20702 0.93242 1.03536 1.00314 1.21167 0.93715 0.96236 0.96817 0.91827 0.95010 0.90745 0.88841 0.92637 0.74589 0.92038 0.98838 0.94043 0.96652 0.91933 0.86768 0.84528 0.92448 0.91778 0.86181 0.83591 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.78 71.98 0.70 -1.98 16 2 C -0.10 -1.74 4.84 30.59 0.15 -1.59 16 3 C -0.05 -0.84 2.36 -12.29 -0.03 -0.87 16 4 H 0.13 1.34 7.87 -2.39 -0.02 1.32 16 5 C 0.52 13.53 5.62 87.66 0.49 14.03 16 6 O -0.58 -20.05 14.97 -3.06 -0.05 -20.09 16 7 N -0.68 -16.89 5.56 -442.52 -2.46 -19.35 16 8 C 0.12 4.08 6.04 44.99 0.27 4.36 16 9 H 0.10 4.09 7.39 -2.39 -0.02 4.08 16 10 C -0.18 -6.62 7.03 -9.89 -0.07 -6.69 16 11 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 12 C 0.19 9.53 5.74 86.53 0.50 10.02 16 13 N -0.62 -32.54 3.38 -688.14 -2.33 -34.86 16 14 C -0.24 -13.64 10.35 84.03 0.87 -12.77 16 15 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 16 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 17 N -0.95 -57.62 10.84 21.65 0.23 -57.38 16 18 Si 0.98 45.66 29.56 68.60 2.03 47.69 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 C 0.15 6.45 7.06 86.53 0.61 7.06 16 23 C -0.17 -5.93 7.03 -9.89 -0.07 -6.00 16 24 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 25 C -0.12 -2.14 4.77 -19.85 -0.09 -2.24 16 26 C -0.08 -1.66 8.86 22.25 0.20 -1.46 16 27 C -0.21 -4.15 9.04 22.37 0.20 -3.94 16 28 C 0.12 2.19 6.69 22.51 0.15 2.34 16 29 O -0.33 -6.04 10.50 -92.51 -0.97 -7.01 16 30 C 0.02 0.21 9.81 113.37 1.11 1.32 16 31 C -0.16 -2.57 9.99 22.37 0.22 -2.35 16 32 C -0.06 -0.85 9.66 22.25 0.22 -0.64 16 33 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.03 0.74 6.97 -2.39 -0.02 0.72 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.21 7.11 -2.39 -0.02 1.19 16 38 H 0.42 7.31 8.83 -92.70 -0.82 6.49 16 39 H 0.06 3.45 6.48 -2.39 -0.02 3.44 16 40 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.11 2.74 7.45 -2.91 -0.02 2.72 16 45 H 0.14 2.23 6.30 -2.91 -0.02 2.21 16 46 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 47 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 48 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 49 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 50 H 0.16 1.13 7.94 -2.91 -0.02 1.11 16 Total: -1.00 -75.08 405.36 2.47 -72.61 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.12 Total: 22.97 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.89 Total: -4.57 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.55 Total: -111.59 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.02 Total: -27.10 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -75.08 2.47 -72.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115281044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.344 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds