Wall clock time and date at job start Wed Apr 1 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46981 * 2 1 4 4 H 1.09000 * 109.46920 * 54.02364 * 3 2 1 5 5 S 1.81403 * 109.46945 * 174.02406 * 3 2 1 6 6 C 1.81397 * 102.99966 * 290.07431 * 5 3 2 7 7 C 1.50701 * 109.46852 * 294.02390 * 3 2 1 8 8 O 1.21277 * 119.99914 * 264.99648 * 7 3 2 9 9 N 1.34781 * 119.99901 * 85.00405 * 7 3 2 10 10 C 1.46493 * 119.99930 * 182.87065 * 9 7 3 11 11 C 1.53003 * 109.46090 * 297.70444 * 10 9 7 12 12 C 1.52996 * 109.47146 * 299.54970 * 11 10 9 13 13 O 1.42902 * 109.47149 * 180.17818 * 12 11 10 14 14 C 1.42900 * 113.99759 * 179.97438 * 13 12 11 15 15 C 1.53032 * 109.46244 * 177.74392 * 10 9 7 16 16 C 1.53196 * 109.31322 * 301.34641 * 15 10 9 17 17 N 1.46923 * 108.77192 * 305.36123 * 16 15 10 18 18 C 1.36939 * 120.63101 * 233.58504 * 17 16 15 19 19 H 1.07996 * 119.99809 * 155.28635 * 18 17 16 20 20 C 1.38814 * 120.00067 * 335.27966 * 18 17 16 21 21 N 1.31620 * 119.99877 * 334.43320 * 20 18 17 22 22 Si 1.86793 * 119.99938 * 154.42511 * 20 18 17 23 23 H 1.48509 * 109.46972 * 94.99372 * 22 20 18 24 24 H 1.48503 * 109.47335 * 214.99376 * 22 20 18 25 25 H 1.48500 * 109.47299 * 334.99601 * 22 20 18 26 26 C 1.46930 * 118.73724 * 53.61217 * 17 16 15 27 27 C 1.53042 * 109.46080 * 57.67362 * 10 9 7 28 28 H 1.09001 * 109.47126 * 178.79061 * 1 2 3 29 29 H 1.08999 * 109.47792 * 298.79308 * 1 2 3 30 30 H 1.09003 * 109.46791 * 58.79632 * 1 2 3 31 31 H 1.08993 * 109.47334 * 239.99750 * 2 1 3 32 32 H 1.09001 * 109.46829 * 119.99252 * 2 1 3 33 33 H 1.09004 * 109.46900 * 65.65254 * 6 5 3 34 34 H 1.09001 * 109.47075 * 185.65090 * 6 5 3 35 35 H 1.08997 * 109.47769 * 305.65211 * 6 5 3 36 36 H 0.97003 * 119.99965 * 2.86913 * 9 7 3 37 37 H 1.08998 * 109.46997 * 59.54756 * 11 10 9 38 38 H 1.09004 * 109.46959 * 179.54630 * 11 10 9 39 39 H 1.09001 * 109.47024 * 300.17670 * 12 11 10 40 40 H 1.08995 * 109.47018 * 60.17844 * 12 11 10 41 41 H 1.08998 * 109.46896 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47498 * 299.99926 * 14 13 12 43 43 H 1.09007 * 109.47187 * 60.00130 * 14 13 12 44 44 H 1.09003 * 109.49703 * 61.29705 * 15 10 9 45 45 H 1.09003 * 109.50018 * 181.39591 * 15 10 9 46 46 H 1.09001 * 109.58567 * 185.57939 * 16 15 10 47 47 H 1.08997 * 109.58443 * 65.14924 * 16 15 10 48 48 H 0.96996 * 119.99864 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.58271 * 186.59991 * 26 17 16 50 50 H 1.08992 * 109.58955 * 66.17491 * 26 17 16 51 51 H 1.08998 * 109.50016 * 178.60524 * 27 10 9 52 52 H 1.08999 * 109.50227 * 298.70657 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5919 1.9863 0.8317 5 16 3.8452 1.4456 0.1781 6 6 4.0873 0.8976 1.8902 7 6 1.6620 2.1089 -1.2978 8 8 2.4514 2.1357 -2.2180 9 7 0.4467 2.6751 -1.4356 10 6 0.0557 3.2673 -2.7172 11 6 0.9956 4.4277 -3.0504 12 6 0.8989 5.4927 -1.9562 13 8 1.7737 6.5784 -2.2696 14 6 1.7589 7.6334 -1.3058 15 6 -1.3808 3.7864 -2.6219 16 6 -2.3145 2.6288 -2.2544 17 7 -2.1282 1.5439 -3.2275 18 6 -3.1988 1.0198 -3.9016 19 1 -3.0525 0.5403 -4.8581 20 6 -4.4722 1.1048 -3.3553 21 7 -4.6236 1.2047 -2.0517 22 14 -5.9705 1.0778 -4.4704 23 1 -6.4899 -0.3101 -4.5680 24 1 -7.0227 1.9617 -3.9073 25 1 -5.5902 1.5602 -5.8224 26 6 -0.7715 1.0315 -3.4632 27 6 0.1449 2.2070 -3.8172 28 1 -0.3633 -1.0274 -0.0217 29 1 -0.3635 0.4949 0.9006 30 1 -0.3633 0.5324 -0.8790 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.7462 -0.1325 1.9937 34 1 5.1456 0.9572 2.1446 35 1 3.5158 1.5387 2.5613 36 1 -0.1691 2.6904 -0.6862 37 1 2.0199 4.0599 -3.1099 38 1 0.7098 4.8633 -4.0079 39 1 -0.1261 5.8582 -1.8946 40 1 1.1878 5.0579 -0.9995 41 1 2.4489 8.4182 -1.6158 42 1 0.7517 8.0433 -1.2311 43 1 2.0654 7.2432 -0.3352 44 1 -1.4385 4.5582 -1.8543 45 1 -1.6809 4.2049 -3.5826 46 1 -3.3490 2.9709 -2.2821 47 1 -2.0733 2.2682 -1.2544 48 1 -5.5134 1.2644 -1.6700 49 1 -0.7880 0.3197 -4.2885 50 1 -0.4045 0.5407 -2.5619 51 1 -0.1696 2.6404 -4.7666 52 1 1.1729 1.8546 -3.9004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151080874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:25 Heat of formation + Delta-G solvation = -62.199499 kcal Electronic energy + Delta-G solvation = -31031.382982 eV Core-core repulsion = 27158.020370 eV Total energy + Delta-G solvation = -3873.362612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.51996 -37.98758 -37.31588 -34.84168 -34.57450 -31.90314 -31.45993 -30.05761 -29.07524 -29.01749 -27.73805 -26.52467 -24.89638 -23.12966 -22.68961 -22.11474 -20.67161 -20.24640 -18.79416 -17.47829 -16.84224 -16.45742 -16.27652 -15.93105 -15.40158 -15.07341 -14.80093 -14.48409 -14.35621 -14.13219 -13.87018 -13.76929 -13.53637 -13.31139 -13.27876 -13.02714 -12.83278 -12.76069 -12.57926 -12.33301 -11.74248 -11.69094 -11.50009 -11.35809 -11.31348 -11.12412 -11.04065 -11.00581 -10.86619 -10.71934 -10.42627 -10.28797 -9.92071 -9.88254 -9.79198 -9.76041 -9.47002 -9.14373 -8.67977 -8.45933 -7.72717 -6.76655 -5.87218 -3.19151 1.41106 2.42062 2.84553 3.34476 3.40904 3.43473 3.47343 3.81701 4.47932 4.65668 4.69140 4.91681 4.94129 4.98504 5.07978 5.19211 5.25509 5.27314 5.29022 5.35034 5.39369 5.41936 5.47522 5.51383 5.51911 5.57745 5.60415 5.71778 5.75999 5.99726 6.07092 6.14195 6.16209 6.20751 6.24274 6.36816 6.41742 6.48855 6.62373 6.63589 6.80682 6.92441 7.00994 7.20078 7.23184 7.43987 7.75297 7.79568 8.36015 8.43804 9.14548 9.80627 10.36314 11.21760 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.004190 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.411334 B = 6680.878829 C = 8539.750093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.089 4.089 4 H 0.100 0.900 5 S -0.193 6.193 6 C -0.140 4.140 7 C 0.540 3.460 8 O -0.518 6.518 9 N -0.706 5.706 10 C 0.196 3.804 11 C -0.129 4.129 12 C 0.066 3.934 13 O -0.393 6.393 14 C 0.033 3.967 15 C -0.150 4.150 16 C 0.173 3.827 17 N -0.588 5.588 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.146 3.854 27 C -0.143 4.143 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.017 0.983 48 H 0.252 0.748 49 H 0.051 0.949 50 H 0.024 0.976 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.662 5.104 8.848 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.146 4.146 3 C -0.221 4.221 4 H 0.119 0.881 5 S 0.034 5.966 6 C -0.309 4.309 7 C 0.323 3.677 8 O -0.394 6.394 9 N -0.359 5.359 10 C 0.110 3.890 11 C -0.167 4.167 12 C -0.011 4.011 13 O -0.312 6.312 14 C -0.064 4.064 15 C -0.189 4.189 16 C 0.046 3.954 17 N -0.311 5.311 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.540 5.540 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.183 4.183 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.042 0.958 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.980 5.400 7.358 16.696 hybrid contribution -2.353 -0.260 1.275 2.689 sum 11.627 5.140 8.632 15.366 Atomic orbital electron populations 1.22144 0.93613 1.03503 1.03551 1.21726 0.97325 0.92082 1.03466 1.23534 0.96633 1.01359 1.00568 0.88130 1.87349 1.05171 1.89098 1.14947 1.23529 1.06043 1.04255 0.97025 1.19432 0.82143 0.78165 0.87938 1.90665 1.50054 1.57909 1.40777 1.46174 1.15902 1.58740 1.15064 1.20221 0.93854 0.91798 0.83105 1.21971 1.02594 0.93972 0.98202 1.22598 0.92765 0.87313 0.98398 1.87877 1.65246 1.30318 1.47719 1.22688 1.00919 0.90441 0.92342 1.22602 0.93859 1.00140 1.02310 1.20702 0.98271 0.85642 0.90738 1.44054 1.01606 1.37502 1.47890 1.19152 0.85647 1.34280 0.99127 0.91641 1.24834 0.97952 1.01532 0.95047 1.70125 1.21688 1.53163 1.09015 0.86458 0.83160 0.77529 0.80777 1.21595 1.21615 1.20443 1.20967 0.85708 0.93241 0.98114 1.22395 1.01277 0.97512 0.97136 0.91790 0.92793 0.89749 0.90177 0.91285 0.90461 0.88057 0.90681 0.76464 0.89217 0.90709 0.93156 0.93813 0.89974 0.94271 0.94394 0.92590 0.90626 0.89699 0.96544 0.93789 0.93019 0.95847 0.91544 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.45 37.16 0.35 -1.89 16 2 C -0.11 -1.27 5.36 -26.73 -0.14 -1.41 16 3 C -0.09 -1.10 2.61 -27.88 -0.07 -1.17 16 4 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 5 S -0.19 -2.44 21.06 -107.50 -2.26 -4.70 16 6 C -0.14 -1.16 10.49 101.05 1.06 -0.10 16 7 C 0.54 8.10 5.81 -10.98 -0.06 8.04 16 8 O -0.52 -9.36 12.36 5.56 0.07 -9.29 16 9 N -0.71 -10.19 2.24 -47.57 -0.11 -10.30 16 10 C 0.20 3.10 0.35 -131.78 -0.05 3.05 16 11 C -0.13 -1.98 4.47 -26.73 -0.12 -2.10 16 12 C 0.07 0.91 5.42 37.16 0.20 1.11 16 13 O -0.39 -5.71 10.70 -35.23 -0.38 -6.09 16 14 C 0.03 0.35 11.01 101.05 1.11 1.46 16 15 C -0.15 -2.51 4.62 -26.61 -0.12 -2.63 16 16 C 0.17 3.62 5.12 -3.71 -0.02 3.60 16 17 N -0.59 -13.53 3.00 -172.32 -0.52 -14.05 16 18 C -0.25 -6.62 9.56 -15.06 -0.14 -6.76 16 19 H 0.07 1.73 7.93 -52.49 -0.42 1.31 16 20 C 0.01 0.13 4.70 -17.43 -0.08 0.05 16 21 N -0.90 -24.46 11.53 55.49 0.64 -23.82 16 22 Si 0.89 20.96 29.62 -169.99 -5.04 15.93 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.15 2.95 6.26 -3.71 -0.02 2.93 16 27 C -0.14 -2.56 4.63 -26.61 -0.12 -2.68 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.34 3.56 -51.93 -0.18 1.16 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.69 7.17 -51.93 -0.37 0.32 16 33 H 0.08 0.58 7.43 -51.92 -0.39 0.20 16 34 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.40 5.38 6.76 -40.82 -0.28 5.11 16 37 H 0.09 1.56 6.23 -51.93 -0.32 1.24 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.66 6.38 -51.93 -0.33 0.33 16 40 H 0.04 0.60 7.62 -51.93 -0.40 0.20 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.08 2.05 6.09 -51.93 -0.32 1.74 16 47 H 0.02 0.35 6.98 -51.93 -0.36 -0.02 16 48 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 50 H 0.02 0.48 5.04 -51.93 -0.26 0.21 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.08 1.41 6.14 -51.93 -0.32 1.09 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -29.74 399.31 -8.70 -38.44 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.89 Total: 6.37 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 1.77 Total: 1.49 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.02 Total: -48.16 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.31 Total: -15.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.04 Total: 15.93 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.26 Total: -4.70 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.74 -8.70 -38.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151080874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.761 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds