Wall clock time and date at job start Wed Apr 1 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46981 * 2 1 4 4 H 1.09000 * 109.46920 * 54.02364 * 3 2 1 5 5 S 1.81403 * 109.46945 * 174.02406 * 3 2 1 6 6 C 1.81397 * 102.99966 * 290.07431 * 5 3 2 7 7 C 1.50701 * 109.46852 * 294.02390 * 3 2 1 8 8 O 1.21277 * 119.99914 * 264.99648 * 7 3 2 9 9 N 1.34781 * 119.99901 * 85.00405 * 7 3 2 10 10 C 1.46493 * 119.99930 * 182.87065 * 9 7 3 11 11 C 1.53003 * 109.46090 * 297.70444 * 10 9 7 12 12 C 1.52996 * 109.47146 * 299.54970 * 11 10 9 13 13 O 1.42902 * 109.47149 * 180.17818 * 12 11 10 14 14 C 1.42900 * 113.99759 * 179.97438 * 13 12 11 15 15 C 1.53032 * 109.46244 * 177.74392 * 10 9 7 16 16 C 1.53196 * 109.31322 * 301.34641 * 15 10 9 17 17 N 1.46923 * 108.77192 * 305.36123 * 16 15 10 18 18 C 1.36939 * 120.63101 * 233.58504 * 17 16 15 19 19 H 1.07996 * 119.99809 * 155.28635 * 18 17 16 20 20 C 1.38814 * 120.00067 * 335.27966 * 18 17 16 21 21 N 1.31620 * 119.99877 * 334.43320 * 20 18 17 22 22 Si 1.86793 * 119.99938 * 154.42511 * 20 18 17 23 23 H 1.48509 * 109.46972 * 94.99372 * 22 20 18 24 24 H 1.48503 * 109.47335 * 214.99376 * 22 20 18 25 25 H 1.48500 * 109.47299 * 334.99601 * 22 20 18 26 26 C 1.46930 * 118.73724 * 53.61217 * 17 16 15 27 27 C 1.53042 * 109.46080 * 57.67362 * 10 9 7 28 28 H 1.09001 * 109.47126 * 178.79061 * 1 2 3 29 29 H 1.08999 * 109.47792 * 298.79308 * 1 2 3 30 30 H 1.09003 * 109.46791 * 58.79632 * 1 2 3 31 31 H 1.08993 * 109.47334 * 239.99750 * 2 1 3 32 32 H 1.09001 * 109.46829 * 119.99252 * 2 1 3 33 33 H 1.09004 * 109.46900 * 65.65254 * 6 5 3 34 34 H 1.09001 * 109.47075 * 185.65090 * 6 5 3 35 35 H 1.08997 * 109.47769 * 305.65211 * 6 5 3 36 36 H 0.97003 * 119.99965 * 2.86913 * 9 7 3 37 37 H 1.08998 * 109.46997 * 59.54756 * 11 10 9 38 38 H 1.09004 * 109.46959 * 179.54630 * 11 10 9 39 39 H 1.09001 * 109.47024 * 300.17670 * 12 11 10 40 40 H 1.08995 * 109.47018 * 60.17844 * 12 11 10 41 41 H 1.08998 * 109.46896 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47498 * 299.99926 * 14 13 12 43 43 H 1.09007 * 109.47187 * 60.00130 * 14 13 12 44 44 H 1.09003 * 109.49703 * 61.29705 * 15 10 9 45 45 H 1.09003 * 109.50018 * 181.39591 * 15 10 9 46 46 H 1.09001 * 109.58567 * 185.57939 * 16 15 10 47 47 H 1.08997 * 109.58443 * 65.14924 * 16 15 10 48 48 H 0.96996 * 119.99864 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.58271 * 186.59991 * 26 17 16 50 50 H 1.08992 * 109.58955 * 66.17491 * 26 17 16 51 51 H 1.08998 * 109.50016 * 178.60524 * 27 10 9 52 52 H 1.08999 * 109.50227 * 298.70657 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5919 1.9863 0.8317 5 16 3.8452 1.4456 0.1781 6 6 4.0873 0.8976 1.8902 7 6 1.6620 2.1089 -1.2978 8 8 2.4514 2.1357 -2.2180 9 7 0.4467 2.6751 -1.4356 10 6 0.0557 3.2673 -2.7172 11 6 0.9956 4.4277 -3.0504 12 6 0.8989 5.4927 -1.9562 13 8 1.7737 6.5784 -2.2696 14 6 1.7589 7.6334 -1.3058 15 6 -1.3808 3.7864 -2.6219 16 6 -2.3145 2.6288 -2.2544 17 7 -2.1282 1.5439 -3.2275 18 6 -3.1988 1.0198 -3.9016 19 1 -3.0525 0.5403 -4.8581 20 6 -4.4722 1.1048 -3.3553 21 7 -4.6236 1.2047 -2.0517 22 14 -5.9705 1.0778 -4.4704 23 1 -6.4899 -0.3101 -4.5680 24 1 -7.0227 1.9617 -3.9073 25 1 -5.5902 1.5602 -5.8224 26 6 -0.7715 1.0315 -3.4632 27 6 0.1449 2.2070 -3.8172 28 1 -0.3633 -1.0274 -0.0217 29 1 -0.3635 0.4949 0.9006 30 1 -0.3633 0.5324 -0.8790 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.7462 -0.1325 1.9937 34 1 5.1456 0.9572 2.1446 35 1 3.5158 1.5387 2.5613 36 1 -0.1691 2.6904 -0.6862 37 1 2.0199 4.0599 -3.1099 38 1 0.7098 4.8633 -4.0079 39 1 -0.1261 5.8582 -1.8946 40 1 1.1878 5.0579 -0.9995 41 1 2.4489 8.4182 -1.6158 42 1 0.7517 8.0433 -1.2311 43 1 2.0654 7.2432 -0.3352 44 1 -1.4385 4.5582 -1.8543 45 1 -1.6809 4.2049 -3.5826 46 1 -3.3490 2.9709 -2.2821 47 1 -2.0733 2.2682 -1.2544 48 1 -5.5134 1.2644 -1.6700 49 1 -0.7880 0.3197 -4.2885 50 1 -0.4045 0.5407 -2.5619 51 1 -0.1696 2.6404 -4.7666 52 1 1.1729 1.8546 -3.9004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151080874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:24 Heat of formation + Delta-G solvation = -79.019388 kcal Electronic energy + Delta-G solvation = -31032.112347 eV Core-core repulsion = 27158.020370 eV Total energy + Delta-G solvation = -3874.091977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.81064 -39.20264 -38.58532 -36.23549 -35.87746 -33.62536 -32.75036 -31.65329 -30.50012 -29.74602 -28.80395 -27.64847 -26.40258 -24.63858 -24.01281 -23.45376 -21.98136 -21.62041 -20.20329 -18.86341 -18.38687 -17.53053 -17.37867 -17.02987 -16.70763 -16.49098 -16.19707 -15.80484 -15.57070 -15.37198 -15.20557 -15.01879 -14.83020 -14.51313 -14.40955 -14.27667 -13.99239 -13.85352 -13.70126 -13.54911 -13.21719 -13.04791 -12.89681 -12.72098 -12.58933 -12.50951 -12.32095 -12.28308 -12.18501 -12.13343 -12.07078 -11.91785 -11.58887 -11.29738 -11.26009 -10.79391 -10.63070 -10.46404 -10.42241 -9.94574 -8.68102 -8.66548 -7.87684 -5.20791 0.50117 1.45904 1.50746 1.56401 1.59412 1.72954 2.24161 2.54411 2.80795 3.25908 3.54477 3.68185 3.72033 3.84478 3.94055 4.02372 4.12513 4.18085 4.27085 4.33870 4.36661 4.40499 4.43376 4.43600 4.53212 4.53582 4.57643 4.65843 4.70827 4.76751 4.82765 4.87597 4.91723 4.98923 4.99773 5.03358 5.09547 5.14225 5.17925 5.24926 5.29360 5.45779 5.52849 5.64019 5.69886 5.77935 6.25275 6.39257 6.58273 7.18334 7.26448 7.90286 8.41354 9.18528 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.004190 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.411334 B = 6680.878829 C = 8539.750093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.077 4.077 4 H 0.126 0.874 5 S -0.254 6.254 6 C -0.123 4.123 7 C 0.537 3.463 8 O -0.551 6.551 9 N -0.700 5.700 10 C 0.205 3.795 11 C -0.120 4.120 12 C 0.072 3.928 13 O -0.418 6.418 14 C 0.026 3.974 15 C -0.135 4.135 16 C 0.180 3.820 17 N -0.600 5.600 18 C -0.265 4.265 19 H 0.056 0.944 20 C -0.035 4.035 21 N -0.918 5.918 22 Si 0.948 3.052 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.148 3.852 27 C -0.133 4.133 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.407 0.593 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.250 0.750 49 H 0.036 0.964 50 H 0.028 0.972 51 H 0.060 0.940 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 6.033 10.729 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.136 4.136 3 C -0.208 4.208 4 H 0.144 0.856 5 S -0.026 6.026 6 C -0.291 4.291 7 C 0.322 3.678 8 O -0.429 6.429 9 N -0.352 5.352 10 C 0.119 3.881 11 C -0.158 4.158 12 C -0.005 4.005 13 O -0.338 6.338 14 C -0.070 4.070 15 C -0.174 4.174 16 C 0.055 3.945 17 N -0.323 5.323 18 C -0.395 4.395 19 H 0.074 0.926 20 C -0.232 4.232 21 N -0.563 5.563 22 Si 0.777 3.223 23 H -0.218 1.218 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.023 3.977 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.244 0.756 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.115 0.885 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.034 0.966 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.472 6.339 9.252 18.309 hybrid contribution -2.430 -0.590 0.716 2.601 sum 12.042 5.750 9.968 16.656 Atomic orbital electron populations 1.22069 0.94482 1.02838 1.02974 1.21649 0.96246 0.91932 1.03779 1.23429 0.96449 1.01336 0.99602 0.85633 1.87589 1.05801 1.89712 1.19541 1.23586 1.07248 1.04982 0.93288 1.19902 0.81618 0.77595 0.88662 1.90656 1.50981 1.59009 1.42216 1.46067 1.16037 1.58509 1.14615 1.19982 0.93537 0.91425 0.83159 1.21805 1.00927 0.94128 0.98970 1.22495 0.93369 0.87001 0.97594 1.87837 1.65474 1.31148 1.49307 1.22916 1.02220 0.89821 0.92060 1.22416 0.93103 0.99094 1.02826 1.20574 0.97398 0.86228 0.90336 1.44212 1.01754 1.38259 1.48081 1.19346 0.86941 1.34179 0.99054 0.92638 1.25382 0.99806 1.01932 0.96055 1.70210 1.21816 1.54266 1.10009 0.85577 0.80356 0.77108 0.79277 1.21776 1.21610 1.20254 1.20979 0.85059 0.93946 0.97747 1.22233 1.00026 0.97207 0.97790 0.92443 0.90999 0.92610 0.92215 0.88608 0.89297 0.86750 0.89097 0.75630 0.91232 0.90912 0.92033 0.93372 0.88489 0.93053 0.93493 0.89674 0.91327 0.92890 0.96555 0.94087 0.94499 0.95392 0.92159 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 9.45 71.98 0.68 -3.47 16 2 C -0.10 -2.14 5.36 30.59 0.16 -1.98 16 3 C -0.08 -1.75 2.61 29.85 0.08 -1.68 16 4 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 5 S -0.25 -6.03 21.06 -56.49 -1.19 -7.22 16 6 C -0.12 -1.64 10.49 113.37 1.19 -0.45 16 7 C 0.54 15.75 5.81 87.66 0.51 16.26 16 8 O -0.55 -20.02 12.36 -3.02 -0.04 -20.05 16 9 N -0.70 -19.52 2.24 -422.82 -0.95 -20.46 16 10 C 0.21 6.38 0.35 3.63 0.00 6.38 16 11 C -0.12 -3.60 4.47 30.59 0.14 -3.46 16 12 C 0.07 1.86 5.42 71.98 0.39 2.25 16 13 O -0.42 -11.46 10.70 -148.98 -1.59 -13.05 16 14 C 0.03 0.49 11.01 113.37 1.25 1.73 16 15 C -0.14 -4.40 4.62 30.67 0.14 -4.26 16 16 C 0.18 7.54 5.12 86.36 0.44 7.98 16 17 N -0.60 -28.04 3.00 -699.10 -2.10 -30.14 16 18 C -0.27 -14.12 9.56 84.03 0.80 -13.32 16 19 H 0.06 3.00 7.93 -2.91 -0.02 2.98 16 20 C -0.03 -1.86 4.70 84.86 0.40 -1.47 16 21 N -0.92 -50.50 11.53 21.65 0.25 -50.25 16 22 Si 0.95 43.50 29.62 68.60 2.03 45.53 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.15 6.13 6.26 86.36 0.54 6.68 16 27 C -0.13 -4.82 4.63 30.67 0.14 -4.68 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.74 3.56 -2.39 -0.01 1.74 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.64 7.17 -2.39 -0.02 1.62 16 33 H 0.09 1.01 7.43 -2.39 -0.02 0.99 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.41 10.28 6.76 -92.71 -0.63 9.66 16 37 H 0.07 2.42 6.23 -2.39 -0.01 2.41 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.45 6.38 -2.39 -0.02 1.44 16 40 H 0.05 1.20 7.62 -2.39 -0.02 1.19 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.08 2.30 6.34 -2.39 -0.02 2.28 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 46 H 0.05 2.58 6.09 -2.39 -0.01 2.56 16 47 H 0.02 0.68 6.98 -2.39 -0.02 0.67 16 48 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 49 H 0.04 1.60 7.92 -2.39 -0.02 1.58 16 50 H 0.03 1.16 5.04 -2.39 -0.01 1.14 16 51 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.07 2.68 6.14 -2.39 -0.01 2.66 16 Total: -1.00 -65.32 399.31 3.56 -61.76 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.28 Total: 27.36 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.87 Total: 6.53 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -2.79 Total: -100.85 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.63 Total: -33.11 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -6.03 SS G_CDS: -1.19 Total: -7.22 kcal Total: -65.32 3.56 -61.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151080874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.264 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds