Wall clock time and date at job start Wed Apr 1 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 N 1.46900 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.46839 * 111.00224 * 170.00177 * 4 3 2 6 6 C 1.53038 * 109.52894 * 174.16034 * 5 4 3 7 7 C 1.53122 * 109.27594 * 59.17691 * 6 5 4 8 8 C 1.52996 * 109.52366 * 62.25337 * 7 6 5 9 9 N 1.46498 * 109.47059 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 7 11 11 O 1.21283 * 120.00222 * 0.28168 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27728 * 10 9 8 13 13 S 1.81000 * 109.47389 * 180.02562 * 12 10 9 14 14 C 1.76198 * 99.99715 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00516 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99710 * 179.97438 * 14 13 12 17 17 N 1.31634 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46661 * 60.00586 * 18 16 14 20 20 H 1.48501 * 109.47391 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47355 * 300.00441 * 18 16 14 22 22 C 1.52996 * 109.52468 * 182.38396 * 7 6 5 23 23 O 1.42890 * 109.47368 * 179.87366 * 22 7 6 24 24 C 1.42906 * 114.00236 * 179.97438 * 23 22 7 25 25 C 1.53127 * 109.16033 * 302.35070 * 7 6 5 26 26 C 1.46840 * 110.99904 * 45.78876 * 4 3 2 27 27 H 1.08998 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46934 * 300.00270 * 1 2 3 29 29 H 1.09001 * 109.47253 * 59.99702 * 1 2 3 30 30 H 1.08999 * 109.47160 * 240.00470 * 2 1 3 31 31 H 1.09001 * 109.47253 * 120.00298 * 2 1 3 32 32 H 1.09001 * 109.47357 * 59.99988 * 3 2 1 33 33 H 1.09001 * 109.47220 * 300.00318 * 3 2 1 34 34 H 1.09001 * 109.46799 * 54.14284 * 5 4 3 35 35 H 1.09004 * 109.45452 * 294.16928 * 5 4 3 36 36 H 1.09004 * 109.49926 * 299.24268 * 6 5 4 37 37 H 1.08991 * 109.50839 * 179.12186 * 6 5 4 38 38 H 1.09004 * 109.47066 * 60.00046 * 8 7 6 39 39 H 1.08994 * 109.46974 * 300.00194 * 8 7 6 40 40 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 41 41 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 42 42 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 43 43 H 0.96991 * 119.99795 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.46673 * 299.87533 * 22 7 6 45 45 H 1.09004 * 109.47367 * 59.86609 * 22 7 6 46 46 H 1.08999 * 109.47118 * 59.99958 * 24 23 22 47 47 H 1.08997 * 109.47607 * 179.97438 * 24 23 22 48 48 H 1.09000 * 109.46953 * 300.00376 * 24 23 22 49 49 H 1.08998 * 109.50210 * 177.59524 * 25 7 6 50 50 H 1.09000 * 109.50121 * 297.71467 * 25 7 6 51 51 H 1.09003 * 109.46428 * 305.85777 * 26 4 3 52 52 H 1.08997 * 109.46300 * 65.82431 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0352 2.7926 -0.2386 6 6 5.5581 2.7820 -0.0884 7 6 6.1584 1.7954 -1.0939 8 6 5.8348 2.2551 -2.5168 9 7 6.4101 1.3108 -3.4778 10 6 6.2461 1.5114 -4.8004 11 8 5.6265 2.4764 -5.1952 12 6 6.8325 0.5366 -5.7889 13 16 6.4447 1.0774 -7.4721 14 6 7.2275 -0.2046 -8.3932 15 1 7.7438 -1.0014 -7.8785 16 6 7.1797 -0.1909 -9.7803 17 7 6.5500 0.7800 -10.4077 18 14 8.0101 -1.5496 -10.7569 19 1 7.4127 -2.8588 -10.3903 20 1 7.8157 -1.3055 -12.2088 21 1 9.4626 -1.5644 -10.4481 22 6 7.6759 1.7360 -0.9084 23 8 8.2345 0.8129 -1.8451 24 6 9.6548 0.6823 -1.7561 25 6 5.5577 0.4071 -0.8556 26 6 4.0348 0.4868 -0.9836 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6037 3.4836 0.4856 35 1 3.7720 3.1122 -1.2470 36 1 5.8217 2.4754 0.9239 37 1 5.9498 3.7808 -0.2804 38 1 6.2579 3.2457 -2.6836 39 1 4.7536 2.2949 -2.6487 40 1 6.9053 0.5387 -3.1621 41 1 7.9142 0.4959 -5.6608 42 1 6.4089 -0.4531 -5.6181 43 1 6.5169 0.7897 -11.3770 44 1 8.1013 2.7256 -1.0755 45 1 7.9055 1.4085 0.1056 46 1 9.9258 0.3330 -0.7598 47 1 10.0010 -0.0362 -2.4991 48 1 10.1210 1.6500 -1.9411 49 1 5.9492 -0.2907 -1.5959 50 1 5.8214 0.0633 0.1446 51 1 3.6030 -0.4972 -0.8004 52 1 3.7716 0.8173 -1.9883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162112079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:25 Heat of formation + Delta-G solvation = -86.586439 kcal Electronic energy + Delta-G solvation = -29288.553770 eV Core-core repulsion = 25414.133661 eV Total energy + Delta-G solvation = -3874.420109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.64885 -38.64320 -37.98890 -35.97301 -33.76151 -32.40595 -32.36146 -31.13484 -29.39927 -28.44822 -26.66104 -25.66335 -25.19506 -24.87520 -23.87853 -22.14839 -20.81793 -20.09129 -18.94039 -17.69922 -16.75391 -16.56860 -16.22180 -15.91546 -15.63423 -15.54605 -15.30217 -14.97949 -14.76157 -14.71608 -14.38739 -14.01484 -13.85002 -13.66947 -13.32535 -13.02913 -12.79878 -12.67064 -12.50025 -12.44735 -12.38305 -12.11359 -11.77629 -11.67824 -11.59080 -11.42486 -11.22124 -11.03417 -11.00387 -10.99003 -10.77273 -10.66497 -10.61944 -10.35395 -9.87294 -9.75957 -9.21048 -9.01400 -8.65547 -8.41958 -8.15943 -6.43092 -6.16622 -3.86185 3.11711 3.26020 3.27905 3.30431 3.32640 3.48510 3.62680 3.95527 4.25793 4.36678 4.46135 4.55641 4.70203 4.74006 4.84783 4.97482 5.02521 5.04659 5.10033 5.17617 5.18107 5.19121 5.20460 5.26665 5.33633 5.37727 5.40885 5.42139 5.44777 5.50002 5.54889 5.61857 5.65100 5.73205 5.74705 5.78178 5.89037 5.89618 5.97804 5.98169 5.98650 6.03136 6.13031 6.26203 6.83564 6.86485 6.90036 6.93744 7.64130 8.07650 8.40163 8.85309 9.28403 10.90794 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.002678 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.110350 B =10453.407460 C =11850.065977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.054 3.946 4 N -0.537 5.537 5 C 0.052 3.948 6 C -0.100 4.100 7 C -0.070 4.070 8 C 0.134 3.866 9 N -0.723 5.723 10 C 0.528 3.472 11 O -0.529 6.529 12 C -0.149 4.149 13 S -0.062 6.062 14 C -0.534 4.534 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.869 5.869 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.074 3.926 23 O -0.388 6.388 24 C 0.034 3.966 25 C -0.100 4.100 26 C 0.044 3.956 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.407 0.593 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.268 0.732 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.042 0.958 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 0.020 27.657 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.073 4.073 4 N -0.262 5.262 5 C -0.076 4.076 6 C -0.138 4.138 7 C -0.070 4.070 8 C 0.009 3.991 9 N -0.383 5.383 10 C 0.314 3.686 11 O -0.405 6.405 12 C -0.300 4.300 13 S 0.164 5.836 14 C -0.682 4.682 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.504 5.504 18 Si 0.744 3.256 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.200 1.200 22 C -0.003 4.003 23 O -0.307 6.307 24 C -0.063 4.063 25 C -0.138 4.138 26 C -0.084 4.084 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.248 0.752 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.107 0.893 48 H 0.060 0.940 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.100 0.900 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.474 1.448 27.165 27.425 hybrid contribution 1.479 -1.868 -0.655 2.471 sum -1.995 -0.420 26.510 26.588 Atomic orbital electron populations 1.21737 0.95528 1.01848 1.01826 1.21697 0.95787 0.96470 1.02723 1.22161 0.87094 0.97262 1.00811 1.62053 1.07206 1.07013 1.49945 1.22112 0.94880 0.90248 1.00328 1.21510 0.94685 0.98598 0.99009 1.20952 0.93495 0.97214 0.95379 1.21272 0.98491 0.93103 0.86225 1.46218 1.57417 1.29540 1.05102 1.20274 0.79584 0.86237 0.82500 1.90677 1.40560 1.30312 1.78905 1.23488 1.03540 1.01096 1.01880 1.85358 1.72349 1.35680 0.90175 1.22840 1.40070 1.11637 0.93682 0.91050 1.24988 0.95336 0.96572 0.96719 1.70014 1.40150 1.31120 1.09119 0.86239 0.79658 0.81212 0.78464 1.19958 1.20855 1.19984 1.22573 0.92753 0.92821 0.92135 1.87597 1.21180 1.63621 1.58297 1.22752 0.80840 1.01350 1.01342 1.21568 0.94147 0.95557 1.02509 1.22290 0.95277 0.96986 0.93807 0.92508 0.92728 0.92699 0.91479 0.91179 0.90793 0.94769 0.90535 0.94062 0.90379 0.90894 0.92154 0.91760 0.75153 0.89450 0.89548 0.92207 0.92994 0.92944 0.94174 0.89331 0.93976 0.90564 0.91012 0.89966 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.00 5.18 -26.73 -0.14 -1.13 16 3 C 0.05 0.45 5.27 -3.82 -0.02 0.43 16 4 N -0.54 -4.81 4.81 -234.68 -1.13 -5.93 16 5 C 0.05 0.44 5.18 -3.84 -0.02 0.42 16 6 C -0.10 -0.76 4.88 -26.65 -0.13 -0.89 16 7 C -0.07 -0.64 0.51 -154.38 -0.08 -0.72 16 8 C 0.13 1.72 3.98 -4.04 -0.02 1.70 16 9 N -0.72 -10.86 4.60 -60.30 -0.28 -11.13 16 10 C 0.53 10.59 7.85 -10.98 -0.09 10.50 16 11 O -0.53 -12.66 15.86 5.55 0.09 -12.57 16 12 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 13 S -0.06 -1.74 20.57 -107.50 -2.21 -3.96 16 14 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.63 13.22 55.49 0.73 -25.89 16 18 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.07 0.64 4.81 37.16 0.18 0.82 16 23 O -0.39 -3.93 6.80 -35.23 -0.24 -4.17 16 24 C 0.03 0.27 11.01 101.05 1.11 1.39 16 25 C -0.10 -0.92 4.57 -26.65 -0.12 -1.05 16 26 C 0.04 0.43 4.60 -3.84 -0.02 0.41 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.57 6.21 -51.93 -0.32 0.24 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.31 8.08 -51.93 -0.42 -0.10 16 34 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.04 0.41 6.51 -51.93 -0.34 0.07 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.91 4.92 -51.93 -0.26 0.65 16 40 H 0.41 5.48 4.69 -40.82 -0.19 5.29 16 41 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.77 6.53 -51.93 -0.34 0.43 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.08 0.75 5.81 -51.93 -0.30 0.45 16 52 H 0.04 0.48 6.51 -51.93 -0.34 0.15 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -34.42 409.43 -9.67 -44.10 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.24 Total: 1.70 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 1.45 Total: -5.01 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.67 Total: -42.96 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.15 Total: -16.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.42 -9.67 -44.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162112079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.488 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds