Wall clock time and date at job start Wed Apr 1 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 N 1.46900 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.46839 * 111.00224 * 170.00177 * 4 3 2 6 6 C 1.53038 * 109.52894 * 174.16034 * 5 4 3 7 7 C 1.53122 * 109.27594 * 59.17691 * 6 5 4 8 8 C 1.52996 * 109.52366 * 62.25337 * 7 6 5 9 9 N 1.46498 * 109.47059 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 7 11 11 O 1.21283 * 120.00222 * 0.28168 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27728 * 10 9 8 13 13 S 1.81000 * 109.47389 * 180.02562 * 12 10 9 14 14 C 1.76198 * 99.99715 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00516 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99710 * 179.97438 * 14 13 12 17 17 N 1.31634 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46661 * 60.00586 * 18 16 14 20 20 H 1.48501 * 109.47391 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47355 * 300.00441 * 18 16 14 22 22 C 1.52996 * 109.52468 * 182.38396 * 7 6 5 23 23 O 1.42890 * 109.47368 * 179.87366 * 22 7 6 24 24 C 1.42906 * 114.00236 * 179.97438 * 23 22 7 25 25 C 1.53127 * 109.16033 * 302.35070 * 7 6 5 26 26 C 1.46840 * 110.99904 * 45.78876 * 4 3 2 27 27 H 1.08998 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46934 * 300.00270 * 1 2 3 29 29 H 1.09001 * 109.47253 * 59.99702 * 1 2 3 30 30 H 1.08999 * 109.47160 * 240.00470 * 2 1 3 31 31 H 1.09001 * 109.47253 * 120.00298 * 2 1 3 32 32 H 1.09001 * 109.47357 * 59.99988 * 3 2 1 33 33 H 1.09001 * 109.47220 * 300.00318 * 3 2 1 34 34 H 1.09001 * 109.46799 * 54.14284 * 5 4 3 35 35 H 1.09004 * 109.45452 * 294.16928 * 5 4 3 36 36 H 1.09004 * 109.49926 * 299.24268 * 6 5 4 37 37 H 1.08991 * 109.50839 * 179.12186 * 6 5 4 38 38 H 1.09004 * 109.47066 * 60.00046 * 8 7 6 39 39 H 1.08994 * 109.46974 * 300.00194 * 8 7 6 40 40 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 41 41 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 42 42 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 43 43 H 0.96991 * 119.99795 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.46673 * 299.87533 * 22 7 6 45 45 H 1.09004 * 109.47367 * 59.86609 * 22 7 6 46 46 H 1.08999 * 109.47118 * 59.99958 * 24 23 22 47 47 H 1.08997 * 109.47607 * 179.97438 * 24 23 22 48 48 H 1.09000 * 109.46953 * 300.00376 * 24 23 22 49 49 H 1.08998 * 109.50210 * 177.59524 * 25 7 6 50 50 H 1.09000 * 109.50121 * 297.71467 * 25 7 6 51 51 H 1.09003 * 109.46428 * 305.85777 * 26 4 3 52 52 H 1.08997 * 109.46300 * 65.82431 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0352 2.7926 -0.2386 6 6 5.5581 2.7820 -0.0884 7 6 6.1584 1.7954 -1.0939 8 6 5.8348 2.2551 -2.5168 9 7 6.4101 1.3108 -3.4778 10 6 6.2461 1.5114 -4.8004 11 8 5.6265 2.4764 -5.1952 12 6 6.8325 0.5366 -5.7889 13 16 6.4447 1.0774 -7.4721 14 6 7.2275 -0.2046 -8.3932 15 1 7.7438 -1.0014 -7.8785 16 6 7.1797 -0.1909 -9.7803 17 7 6.5500 0.7800 -10.4077 18 14 8.0101 -1.5496 -10.7569 19 1 7.4127 -2.8588 -10.3903 20 1 7.8157 -1.3055 -12.2088 21 1 9.4626 -1.5644 -10.4481 22 6 7.6759 1.7360 -0.9084 23 8 8.2345 0.8129 -1.8451 24 6 9.6548 0.6823 -1.7561 25 6 5.5577 0.4071 -0.8556 26 6 4.0348 0.4868 -0.9836 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6037 3.4836 0.4856 35 1 3.7720 3.1122 -1.2470 36 1 5.8217 2.4754 0.9239 37 1 5.9498 3.7808 -0.2804 38 1 6.2579 3.2457 -2.6836 39 1 4.7536 2.2949 -2.6487 40 1 6.9053 0.5387 -3.1621 41 1 7.9142 0.4959 -5.6608 42 1 6.4089 -0.4531 -5.6181 43 1 6.5169 0.7897 -11.3770 44 1 8.1013 2.7256 -1.0755 45 1 7.9055 1.4085 0.1056 46 1 9.9258 0.3330 -0.7598 47 1 10.0010 -0.0362 -2.4991 48 1 10.1210 1.6500 -1.9411 49 1 5.9492 -0.2907 -1.5959 50 1 5.8214 0.0633 0.1446 51 1 3.6030 -0.4972 -0.8004 52 1 3.7716 0.8173 -1.9883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162112079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:23 Heat of formation + Delta-G solvation = -110.093081 kcal Electronic energy + Delta-G solvation = -29289.573094 eV Core-core repulsion = 25414.133661 eV Total energy + Delta-G solvation = -3875.439433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.56142 -40.05547 -38.75889 -36.79382 -34.92663 -34.58333 -33.26124 -31.87073 -30.99871 -29.13421 -27.77689 -27.36576 -26.44801 -25.52650 -24.61117 -22.84762 -21.74454 -21.38580 -20.11217 -19.45726 -17.95349 -17.37450 -17.17221 -16.99776 -16.88160 -16.77187 -16.40621 -16.20482 -15.91983 -15.84840 -15.63824 -15.19981 -14.82631 -14.68290 -14.42437 -14.40684 -13.94875 -13.70607 -13.56691 -13.31013 -13.16948 -13.09635 -13.03389 -12.86123 -12.75921 -12.63038 -12.41280 -12.33357 -12.11836 -11.90623 -11.78118 -11.70119 -11.50137 -11.34459 -11.13096 -11.07493 -10.88600 -10.54413 -10.28414 -9.99116 -9.24309 -8.67174 -8.34481 -6.12947 1.26967 1.43722 1.46626 1.56952 1.66028 2.26396 2.31814 2.80631 2.93387 2.99180 3.34701 3.57189 3.70195 3.79588 4.01323 4.04517 4.09568 4.13851 4.25744 4.28336 4.32211 4.41521 4.43178 4.46603 4.49564 4.53715 4.58529 4.63105 4.66041 4.68354 4.70998 4.74529 4.83249 4.83819 4.94088 4.95017 4.97363 5.05974 5.15319 5.20544 5.22779 5.26889 5.33519 5.38874 5.41070 5.57958 6.10664 6.14291 6.19593 6.23462 6.68733 7.06169 7.34990 8.74675 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.002678 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.110350 B =10453.407460 C =11850.065977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.053 3.947 4 N -0.533 5.533 5 C 0.049 3.951 6 C -0.094 4.094 7 C -0.060 4.060 8 C 0.134 3.866 9 N -0.696 5.696 10 C 0.528 3.472 11 O -0.575 6.575 12 C -0.125 4.125 13 S -0.150 6.150 14 C -0.547 4.547 15 H 0.082 0.918 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.261 1.261 22 C 0.073 3.927 23 O -0.411 6.411 24 C 0.031 3.969 25 C -0.095 4.095 26 C 0.046 3.954 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.019 0.981 34 H 0.092 0.908 35 H 0.019 0.981 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.418 0.582 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -1.593 30.138 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.074 4.074 4 N -0.257 5.257 5 C -0.079 4.079 6 C -0.132 4.132 7 C -0.061 4.061 8 C 0.010 3.990 9 N -0.355 5.355 10 C 0.313 3.687 11 O -0.455 6.455 12 C -0.276 4.276 13 S 0.077 5.923 14 C -0.695 4.695 15 H 0.100 0.900 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.003 4.003 23 O -0.330 6.330 24 C -0.065 4.065 25 C -0.133 4.133 26 C -0.081 4.081 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.037 0.963 34 H 0.110 0.890 35 H 0.037 0.963 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.262 0.738 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -2.072 -0.183 29.709 29.782 hybrid contribution 1.010 -1.332 -1.299 2.117 sum -1.062 -1.515 28.410 28.470 Atomic orbital electron populations 1.21724 0.94881 1.02226 1.01934 1.21655 0.96348 0.95917 1.02363 1.22214 0.86856 0.97693 1.00658 1.62134 1.07488 1.07046 1.49055 1.22184 0.95831 0.90294 0.99555 1.21513 0.93674 0.98718 0.99269 1.20924 0.94581 0.97624 0.92977 1.21418 0.97394 0.92278 0.87958 1.46055 1.55991 1.29845 1.03609 1.20097 0.79307 0.85398 0.83881 1.90662 1.42848 1.32086 1.79854 1.23320 1.04737 1.01892 0.97676 1.85540 1.73387 1.37559 0.95776 1.23170 1.40245 1.11703 0.94360 0.90019 1.26153 0.95780 0.99353 0.97895 1.70183 1.41643 1.33438 1.09563 0.84990 0.78808 0.77592 0.76511 1.18632 1.20303 1.18588 1.22639 0.91649 0.92876 0.93128 1.87515 1.22382 1.64024 1.59100 1.22851 0.79717 1.01415 1.02552 1.21534 0.93419 0.95235 1.03090 1.22249 0.95984 0.97415 0.92500 0.92011 0.91736 0.93472 0.92629 0.90620 0.89523 0.96284 0.88974 0.96286 0.88453 0.89896 0.93069 0.93217 0.73835 0.87699 0.87842 0.91977 0.92847 0.90466 0.92211 0.89419 0.94077 0.91501 0.89351 0.89447 0.97053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.13 -1.84 5.18 30.59 0.16 -1.68 16 3 C 0.05 0.85 5.27 86.30 0.46 1.31 16 4 N -0.53 -8.90 4.81 -896.38 -4.31 -13.21 16 5 C 0.05 0.78 5.18 86.33 0.45 1.23 16 6 C -0.09 -1.22 4.88 30.65 0.15 -1.07 16 7 C -0.06 -1.01 0.51 -52.10 -0.03 -1.04 16 8 C 0.13 3.43 3.98 86.38 0.34 3.77 16 9 N -0.70 -20.75 4.60 -463.07 -2.13 -22.89 16 10 C 0.53 21.51 7.85 87.66 0.69 22.20 16 11 O -0.57 -28.65 15.86 -3.04 -0.05 -28.70 16 12 C -0.12 -5.38 6.16 71.24 0.44 -4.94 16 13 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 14 C -0.55 -32.09 9.50 67.96 0.65 -31.45 16 15 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 16 C 0.01 0.75 5.49 84.86 0.47 1.21 16 17 N -0.91 -57.07 13.22 21.65 0.29 -56.78 16 18 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 C 0.07 1.07 4.81 71.98 0.35 1.42 16 23 O -0.41 -7.41 6.80 -148.98 -1.01 -8.43 16 24 C 0.03 0.43 11.01 113.37 1.25 1.68 16 25 C -0.10 -1.58 4.57 30.65 0.14 -1.44 16 26 C 0.05 0.87 4.60 86.33 0.40 1.27 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.94 6.21 -2.39 -0.01 0.92 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.02 0.36 8.08 -2.39 -0.02 0.34 16 34 H 0.09 1.18 8.12 -2.39 -0.02 1.17 16 35 H 0.02 0.39 6.51 -2.38 -0.02 0.37 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.05 1.46 4.92 -2.39 -0.01 1.45 16 40 H 0.42 10.79 4.69 -92.71 -0.44 10.35 16 41 H 0.10 4.13 8.14 -2.40 -0.02 4.11 16 42 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 43 H 0.27 15.75 8.31 -92.72 -0.77 14.98 16 44 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 1.25 6.53 -2.39 -0.02 1.23 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.09 1.55 5.81 -2.39 -0.01 1.53 16 52 H 0.01 0.28 6.51 -2.39 -0.02 0.26 16 Total: -1.00 -76.93 409.43 0.72 -76.21 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.46 Total: 26.05 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 6.61 Total: -8.75 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -6.15 Total: -92.88 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.06 Total: -37.12 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -76.93 0.72 -76.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162112079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.880 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds