Wall clock time and date at job start Wed Apr 1 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09008 * 109.47350 * 54.99886 * 3 2 1 5 5 C 1.53000 * 109.47327 * 174.99592 * 3 2 1 6 6 N 1.46903 * 109.47376 * 184.99876 * 5 3 2 7 7 C 1.46900 * 110.99777 * 180.02562 * 6 5 3 8 8 H 1.08994 * 109.47211 * 35.00391 * 7 6 5 9 9 C 1.52998 * 109.46930 * 274.99770 * 7 6 5 10 10 C 1.53002 * 109.46603 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47408 * 60.00269 * 10 9 7 12 12 C 1.53000 * 109.47201 * 300.00001 * 11 10 9 13 13 C 1.53000 * 109.46626 * 155.00328 * 7 6 5 14 14 H 1.09001 * 109.47643 * 60.00064 * 13 7 6 15 15 N 1.46504 * 109.46987 * 299.99588 * 13 7 6 16 16 C 1.34775 * 119.99561 * 155.00053 * 15 13 7 17 17 O 1.21282 * 120.00577 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99768 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47349 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00182 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99849 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46755 * 90.00066 * 24 22 20 26 26 H 1.48495 * 109.46931 * 210.00080 * 24 22 20 27 27 H 1.48500 * 109.46738 * 330.00322 * 24 22 20 28 28 O 1.42902 * 109.47211 * 295.00083 * 3 2 1 29 29 C 1.42898 * 114.00105 * 150.00192 * 28 3 2 30 30 H 1.08998 * 109.47617 * 300.00308 * 1 2 3 31 31 H 1.08998 * 109.47004 * 60.00326 * 1 2 3 32 32 H 1.09004 * 109.47413 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47181 * 239.99628 * 2 1 3 34 34 H 1.08998 * 109.47004 * 119.99674 * 2 1 3 35 35 H 1.08998 * 109.46600 * 64.99900 * 5 3 2 36 36 H 1.09001 * 109.46945 * 305.00153 * 5 3 2 37 37 H 1.00901 * 110.99671 * 56.04825 * 6 5 3 38 38 H 1.08994 * 109.47681 * 300.00333 * 9 7 6 39 39 H 1.08999 * 109.47144 * 60.00732 * 9 7 6 40 40 H 1.09004 * 109.46952 * 180.02562 * 10 9 7 41 41 H 1.09001 * 109.47026 * 300.00044 * 10 9 7 42 42 H 1.09007 * 109.46891 * 59.99570 * 11 10 9 43 43 H 1.08994 * 109.47350 * 179.97438 * 11 10 9 44 44 H 1.08994 * 109.47162 * 299.99729 * 12 11 10 45 45 H 1.08999 * 109.47326 * 179.97438 * 12 11 10 46 46 H 0.96993 * 120.00065 * 335.00312 * 15 13 7 47 47 H 1.09005 * 109.46867 * 60.00428 * 18 16 15 48 48 H 1.09000 * 109.47235 * 300.00468 * 18 16 15 49 49 H 0.97005 * 119.99878 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.47331 * 59.99696 * 29 28 3 51 51 H 1.08996 * 109.46934 * 180.02562 * 29 28 3 52 52 H 1.09000 * 109.46821 * 299.99379 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0445 2.8276 0.2462 7 6 5.5078 2.8685 0.3686 8 1 5.9452 2.0730 -0.2346 9 6 5.9026 2.6735 1.8339 10 6 7.4267 2.7167 1.9614 11 6 7.9414 4.0713 1.4704 12 6 7.5465 4.2664 0.0052 13 6 6.0229 4.2229 -0.1225 14 1 5.5855 5.0185 0.4807 15 7 5.6449 4.4096 -1.5255 16 6 5.5231 5.6531 -2.0308 17 8 5.7269 6.6175 -1.3242 18 6 5.1348 5.8452 -3.4742 19 16 5.0558 7.6146 -3.8475 20 6 4.5942 7.5486 -5.5466 21 1 4.4505 6.5938 -6.0305 22 6 4.4142 8.7237 -6.2630 23 7 4.5889 9.8874 -5.6732 24 14 3.9255 8.6538 -8.0646 25 1 2.4447 8.6513 -8.1760 26 1 4.4733 9.8387 -8.7724 27 1 4.4701 7.4155 -8.6774 28 8 1.6619 2.0814 -1.2210 29 6 1.4559 3.4903 -1.1003 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.0029 0.9836 -0.7595 36 1 3.8569 0.8801 1.0114 37 1 3.6031 3.2971 1.0226 38 1 5.4652 3.4690 2.4370 39 1 5.5357 1.7087 2.1837 40 1 7.7081 2.5774 3.0052 41 1 7.8645 1.9214 1.3581 42 1 7.5036 4.8667 2.0737 43 1 9.0271 4.1022 1.5617 44 1 7.9843 3.4711 -0.5980 45 1 7.9128 5.2316 -0.3444 46 1 5.4822 3.6383 -2.0907 47 1 4.1592 5.3923 -3.6513 48 1 5.8772 5.3715 -4.1164 49 1 4.4634 10.7087 -6.1739 50 1 2.3768 3.9644 -0.7609 51 1 1.1714 3.9002 -2.0694 52 1 0.6617 3.6808 -0.3784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224911151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:05 Heat of formation + Delta-G solvation = -108.322449 kcal Electronic energy + Delta-G solvation = -29060.829294 eV Core-core repulsion = 25185.466641 eV Total energy + Delta-G solvation = -3875.362653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06448 -38.77131 -37.94695 -35.01488 -33.86980 -33.64125 -32.37196 -30.40325 -30.06111 -28.30763 -27.26611 -25.86960 -25.40739 -23.34974 -22.66777 -21.92221 -21.27356 -20.23348 -19.90864 -17.76933 -17.08231 -16.68163 -16.15066 -15.75334 -15.59510 -15.16775 -14.83001 -14.75396 -14.59362 -14.34966 -14.08577 -14.01016 -13.86850 -13.40583 -13.34986 -13.19215 -12.96700 -12.82886 -12.68884 -12.44395 -12.26264 -11.86451 -11.65804 -11.47340 -11.42557 -11.32707 -11.26372 -11.02999 -11.00482 -10.96411 -10.90200 -10.79555 -10.70606 -10.47616 -9.75174 -9.62728 -9.22370 -9.01360 -8.65709 -8.51381 -8.15508 -6.42518 -6.16315 -3.85611 3.14081 3.25651 3.27300 3.32162 3.38148 3.68800 3.72526 3.83871 4.26377 4.43632 4.51942 4.60614 4.69612 4.79589 4.80779 4.87940 4.97950 5.06273 5.13297 5.18697 5.19117 5.21587 5.22766 5.26896 5.35669 5.40973 5.47794 5.49021 5.62779 5.64155 5.67319 5.71694 5.74606 5.77175 5.79680 5.83277 5.92771 5.95857 6.01182 6.02329 6.06602 6.18949 6.24376 6.27104 6.72703 6.84678 7.06217 7.22179 7.65360 7.94116 8.41092 8.80855 9.29227 10.91094 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.003030 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.989770 B = 9239.803588 C =11853.406993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.092 3.908 4 H 0.056 0.944 5 C 0.037 3.963 6 N -0.676 5.676 7 C 0.082 3.918 8 H 0.082 0.918 9 C -0.144 4.144 10 C -0.116 4.116 11 C -0.117 4.117 12 C -0.132 4.132 13 C 0.164 3.836 14 H 0.085 0.915 15 N -0.719 5.719 16 C 0.535 3.465 17 O -0.524 6.524 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 O -0.375 6.375 29 C 0.028 3.972 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.339 0.661 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.398 0.602 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.267 0.733 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -22.090 17.012 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.092 4.092 6 N -0.306 5.306 7 C -0.028 4.028 8 H 0.100 0.900 9 C -0.184 4.184 10 C -0.154 4.154 11 C -0.155 4.155 12 C -0.171 4.171 13 C 0.057 3.943 14 H 0.103 0.897 15 N -0.370 5.370 16 C 0.321 3.679 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 O -0.293 6.293 29 C -0.069 4.069 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.158 0.842 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.231 0.769 47 H 0.107 0.893 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.546 -20.267 17.298 26.651 hybrid contribution -0.484 -1.669 -1.081 2.047 sum -1.030 -21.935 16.217 27.299 Atomic orbital electron populations 1.21706 0.95191 1.01522 1.02296 1.21573 0.96791 0.94909 1.02545 1.22113 0.92647 0.93870 0.88017 0.92643 1.22627 0.95969 0.89702 1.00933 1.60565 1.05083 1.15521 1.49383 1.21866 0.87909 0.97804 0.95236 0.90025 1.22215 0.97207 1.01838 0.97127 1.21493 0.94837 0.97971 1.01074 1.21503 1.00761 0.97067 0.96199 1.21956 0.95780 1.02941 0.96402 1.20738 0.93565 0.96457 0.83494 0.89732 1.45796 1.71954 1.08007 1.11292 1.20211 0.75996 0.82509 0.89216 1.90681 1.48956 1.39626 1.60674 1.23515 1.04087 1.07804 0.94821 1.85344 1.90532 0.95163 1.12442 1.22882 1.53981 0.95383 0.95908 0.91002 1.24982 0.94961 0.94556 0.99097 1.70025 1.46318 0.97354 1.36720 0.86189 0.78760 0.77815 0.82871 1.20295 1.20816 1.19701 1.87876 1.89075 1.21243 1.31120 1.22928 1.00705 0.81159 1.02092 0.93133 0.91777 0.92789 0.90968 0.91103 0.90130 0.94658 0.84215 0.91439 0.91934 0.91976 0.91943 0.91672 0.91720 0.91965 0.90712 0.76886 0.89322 0.89585 0.92276 0.91212 0.90042 0.95299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.01 16 3 C 0.09 0.77 2.41 -26.73 -0.06 0.71 16 4 H 0.06 0.45 7.79 -51.92 -0.40 0.04 16 5 C 0.04 0.28 5.15 -3.82 -0.02 0.26 16 6 N -0.68 -5.77 4.08 -106.73 -0.44 -6.21 16 7 C 0.08 0.69 1.99 -67.71 -0.13 0.56 16 8 H 0.08 0.68 7.80 -51.93 -0.40 0.28 16 9 C -0.14 -1.01 5.17 -26.73 -0.14 -1.14 16 10 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 11 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 12 C -0.13 -1.45 5.49 -26.75 -0.15 -1.60 16 13 C 0.16 1.89 2.11 -67.95 -0.14 1.75 16 14 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 15 N -0.72 -9.83 4.91 -53.83 -0.26 -10.09 16 16 C 0.53 10.08 7.81 -10.98 -0.09 10.00 16 17 O -0.52 -11.88 15.53 5.56 0.09 -11.80 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 O -0.37 -4.28 9.88 -35.23 -0.35 -4.63 16 29 C 0.03 0.31 10.69 101.05 1.08 1.39 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.04 0.23 7.44 -51.93 -0.39 -0.16 16 37 H 0.34 2.81 8.41 -39.29 -0.33 2.48 16 38 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 39 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.40 4.76 8.60 -40.82 -0.35 4.41 16 47 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 48 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 49 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.07 0.84 6.20 -51.93 -0.32 0.52 16 51 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 LS Contribution 423.65 15.07 6.38 6.38 Total: -1.00 -33.59 423.65 -10.10 -43.69 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -9.69 Total: 3.61 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.66 Total: -8.00 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.03 Total: -42.06 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.26 Total: -16.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.59 -10.10 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224911151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.633 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds