Wall clock time and date at job start Wed Apr 1 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09008 * 109.47350 * 54.99886 * 3 2 1 5 5 C 1.53000 * 109.47327 * 174.99592 * 3 2 1 6 6 N 1.46903 * 109.47376 * 184.99876 * 5 3 2 7 7 C 1.46900 * 110.99777 * 180.02562 * 6 5 3 8 8 H 1.08994 * 109.47211 * 35.00391 * 7 6 5 9 9 C 1.52998 * 109.46930 * 274.99770 * 7 6 5 10 10 C 1.53002 * 109.46603 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47408 * 60.00269 * 10 9 7 12 12 C 1.53000 * 109.47201 * 300.00001 * 11 10 9 13 13 C 1.53000 * 109.46626 * 155.00328 * 7 6 5 14 14 H 1.09001 * 109.47643 * 60.00064 * 13 7 6 15 15 N 1.46504 * 109.46987 * 299.99588 * 13 7 6 16 16 C 1.34775 * 119.99561 * 155.00053 * 15 13 7 17 17 O 1.21282 * 120.00577 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99768 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47349 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00182 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99849 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46755 * 90.00066 * 24 22 20 26 26 H 1.48495 * 109.46931 * 210.00080 * 24 22 20 27 27 H 1.48500 * 109.46738 * 330.00322 * 24 22 20 28 28 O 1.42902 * 109.47211 * 295.00083 * 3 2 1 29 29 C 1.42898 * 114.00105 * 150.00192 * 28 3 2 30 30 H 1.08998 * 109.47617 * 300.00308 * 1 2 3 31 31 H 1.08998 * 109.47004 * 60.00326 * 1 2 3 32 32 H 1.09004 * 109.47413 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47181 * 239.99628 * 2 1 3 34 34 H 1.08998 * 109.47004 * 119.99674 * 2 1 3 35 35 H 1.08998 * 109.46600 * 64.99900 * 5 3 2 36 36 H 1.09001 * 109.46945 * 305.00153 * 5 3 2 37 37 H 1.00901 * 110.99671 * 56.04825 * 6 5 3 38 38 H 1.08994 * 109.47681 * 300.00333 * 9 7 6 39 39 H 1.08999 * 109.47144 * 60.00732 * 9 7 6 40 40 H 1.09004 * 109.46952 * 180.02562 * 10 9 7 41 41 H 1.09001 * 109.47026 * 300.00044 * 10 9 7 42 42 H 1.09007 * 109.46891 * 59.99570 * 11 10 9 43 43 H 1.08994 * 109.47350 * 179.97438 * 11 10 9 44 44 H 1.08994 * 109.47162 * 299.99729 * 12 11 10 45 45 H 1.08999 * 109.47326 * 179.97438 * 12 11 10 46 46 H 0.96993 * 120.00065 * 335.00312 * 15 13 7 47 47 H 1.09005 * 109.46867 * 60.00428 * 18 16 15 48 48 H 1.09000 * 109.47235 * 300.00468 * 18 16 15 49 49 H 0.97005 * 119.99878 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.47331 * 59.99696 * 29 28 3 51 51 H 1.08996 * 109.46934 * 180.02562 * 29 28 3 52 52 H 1.09000 * 109.46821 * 299.99379 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0445 2.8276 0.2462 7 6 5.5078 2.8685 0.3686 8 1 5.9452 2.0730 -0.2346 9 6 5.9026 2.6735 1.8339 10 6 7.4267 2.7167 1.9614 11 6 7.9414 4.0713 1.4704 12 6 7.5465 4.2664 0.0052 13 6 6.0229 4.2229 -0.1225 14 1 5.5855 5.0185 0.4807 15 7 5.6449 4.4096 -1.5255 16 6 5.5231 5.6531 -2.0308 17 8 5.7269 6.6175 -1.3242 18 6 5.1348 5.8452 -3.4742 19 16 5.0558 7.6146 -3.8475 20 6 4.5942 7.5486 -5.5466 21 1 4.4505 6.5938 -6.0305 22 6 4.4142 8.7237 -6.2630 23 7 4.5889 9.8874 -5.6732 24 14 3.9255 8.6538 -8.0646 25 1 2.4447 8.6513 -8.1760 26 1 4.4733 9.8387 -8.7724 27 1 4.4701 7.4155 -8.6774 28 8 1.6619 2.0814 -1.2210 29 6 1.4559 3.4903 -1.1003 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.0029 0.9836 -0.7595 36 1 3.8569 0.8801 1.0114 37 1 3.6031 3.2971 1.0226 38 1 5.4652 3.4690 2.4370 39 1 5.5357 1.7087 2.1837 40 1 7.7081 2.5774 3.0052 41 1 7.8645 1.9214 1.3581 42 1 7.5036 4.8667 2.0737 43 1 9.0271 4.1022 1.5617 44 1 7.9843 3.4711 -0.5980 45 1 7.9128 5.2316 -0.3444 46 1 5.4822 3.6383 -2.0907 47 1 4.1592 5.3923 -3.6513 48 1 5.8772 5.3715 -4.1164 49 1 4.4634 10.7087 -6.1739 50 1 2.3768 3.9644 -0.7609 51 1 1.1714 3.9002 -2.0694 52 1 0.6617 3.6808 -0.3784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224911151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:03 Heat of formation + Delta-G solvation = -131.031269 kcal Electronic energy + Delta-G solvation = -29061.814022 eV Core-core repulsion = 25185.466641 eV Total energy + Delta-G solvation = -3876.347381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.11174 -39.75791 -38.96395 -35.75791 -35.07185 -34.57239 -34.30635 -31.63127 -30.83812 -29.44914 -28.15093 -27.61686 -26.68115 -24.01297 -23.51777 -22.64695 -21.92500 -21.43152 -20.91848 -19.75444 -17.88698 -17.72127 -17.60287 -16.87272 -16.54882 -16.48938 -16.25584 -16.00319 -15.75506 -15.40560 -15.13682 -14.73700 -14.66648 -14.61247 -14.56581 -14.08363 -13.97929 -13.87083 -13.68616 -13.52800 -13.27021 -13.14947 -12.89762 -12.87137 -12.60438 -12.36342 -12.21559 -12.12932 -12.11021 -11.89103 -11.78725 -11.68562 -11.59594 -11.48610 -11.26140 -11.13445 -10.80963 -10.41703 -10.25584 -9.90376 -9.18082 -8.64205 -8.33741 -6.10970 1.28822 1.42329 1.47972 1.59281 1.72918 2.27797 2.39144 2.99105 3.00082 3.01937 3.34949 3.69755 3.84692 3.94627 4.03836 4.10039 4.14588 4.18148 4.21966 4.26748 4.34127 4.41794 4.44934 4.47689 4.53002 4.54111 4.54727 4.60588 4.65291 4.77971 4.85425 4.91981 4.94265 5.02871 5.06468 5.11099 5.13857 5.14246 5.15857 5.23776 5.25640 5.34542 5.42536 5.45035 5.46712 5.65578 6.07590 6.20783 6.36490 6.47939 6.63969 7.07522 7.37551 8.75479 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.003030 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.989770 B = 9239.803588 C =11853.406993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.087 3.913 4 H 0.060 0.940 5 C 0.045 3.955 6 N -0.689 5.689 7 C 0.094 3.906 8 H 0.093 0.907 9 C -0.137 4.137 10 C -0.110 4.110 11 C -0.114 4.114 12 C -0.128 4.128 13 C 0.163 3.837 14 H 0.058 0.942 15 N -0.693 5.693 16 C 0.537 3.463 17 O -0.569 6.569 18 C -0.128 4.128 19 S -0.146 6.146 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.259 1.259 28 O -0.393 6.393 29 C 0.033 3.967 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.341 0.659 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.410 0.590 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.271 0.729 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -25.461 17.340 30.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.029 3.971 4 H 0.078 0.922 5 C -0.084 4.084 6 N -0.320 5.320 7 C -0.016 4.016 8 H 0.111 0.889 9 C -0.177 4.177 10 C -0.148 4.148 11 C -0.152 4.152 12 C -0.167 4.167 13 C 0.058 3.942 14 H 0.076 0.924 15 N -0.344 5.344 16 C 0.322 3.678 17 O -0.448 6.448 18 C -0.279 4.279 19 S 0.081 5.919 20 C -0.694 4.694 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.183 1.183 28 O -0.312 6.312 29 C -0.063 4.063 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.246 0.754 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.572 -23.704 17.646 29.556 hybrid contribution -0.465 -0.704 -1.088 1.377 sum -1.037 -24.408 16.558 29.512 Atomic orbital electron populations 1.21699 0.95520 1.01985 1.01497 1.21587 0.96484 0.94050 1.03344 1.22324 0.93378 0.94400 0.87003 0.92204 1.22553 0.95127 0.89125 1.01610 1.60491 1.05113 1.16483 1.49864 1.21726 0.87927 0.95469 0.96471 0.88926 1.22166 0.97236 1.02724 0.95566 1.21470 0.94684 0.96626 1.02044 1.21485 1.01292 0.98254 0.94213 1.21893 0.95063 1.01358 0.98387 1.20922 0.94098 0.97855 0.81369 0.92408 1.45593 1.69829 1.06493 1.12486 1.19911 0.76033 0.83578 0.88231 1.90671 1.51364 1.41383 1.61348 1.23351 1.05462 1.02459 0.96631 1.85496 1.90875 1.02200 1.13357 1.23200 1.54147 0.96036 0.96036 0.90235 1.26110 0.94545 0.93923 1.04500 1.70185 1.47386 0.98257 1.38937 0.84973 0.78683 0.78370 0.76079 1.19281 1.20173 1.18299 1.87851 1.89378 1.20955 1.33040 1.22803 1.00534 0.81483 1.01514 0.92712 0.93783 0.91722 0.91535 0.88831 0.90761 0.92375 0.84001 0.91918 0.89913 0.90552 0.90870 0.92757 0.90961 0.90583 0.94420 0.75408 0.87950 0.87943 0.92005 0.92105 0.91424 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 71.98 0.71 -1.23 16 2 C -0.12 -1.39 5.64 30.59 0.17 -1.22 16 3 C 0.09 1.29 2.41 30.59 0.07 1.36 16 4 H 0.06 0.84 7.79 -2.38 -0.02 0.82 16 5 C 0.04 0.56 5.15 86.30 0.44 1.00 16 6 N -0.69 -10.45 4.08 -491.58 -2.01 -12.46 16 7 C 0.09 1.37 1.99 44.91 0.09 1.46 16 8 H 0.09 1.21 7.80 -2.39 -0.02 1.19 16 9 C -0.14 -1.50 5.17 30.59 0.16 -1.34 16 10 C -0.11 -1.20 5.92 30.59 0.18 -1.02 16 11 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 12 C -0.13 -2.76 5.49 30.58 0.17 -2.59 16 13 C 0.16 3.68 2.11 44.98 0.09 3.78 16 14 H 0.06 1.66 7.58 -2.39 -0.02 1.65 16 15 N -0.69 -18.65 4.91 -442.60 -2.17 -20.82 16 16 C 0.54 20.66 7.81 87.66 0.68 21.35 16 17 O -0.57 -27.00 15.53 -3.04 -0.05 -27.05 16 18 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 19 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 20 C -0.55 -32.03 9.50 67.96 0.65 -31.39 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.81 5.49 84.86 0.47 1.27 16 23 N -0.91 -56.88 13.22 21.65 0.29 -56.60 16 24 Si 1.00 44.56 29.55 68.60 2.03 46.59 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 O -0.39 -8.65 9.88 -148.98 -1.47 -10.12 16 29 C 0.03 0.75 10.69 113.37 1.21 1.96 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.74 7.82 -2.39 -0.02 0.72 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 36 H 0.06 0.49 7.44 -2.39 -0.02 0.48 16 37 H 0.34 5.09 8.41 -89.69 -0.75 4.34 16 38 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 39 H 0.08 0.65 7.45 -2.39 -0.02 0.63 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.41 9.17 8.60 -92.71 -0.80 8.37 16 47 H 0.10 3.99 8.14 -2.39 -0.02 3.98 16 48 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 49 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 50 H 0.06 1.46 6.20 -2.39 -0.01 1.45 16 51 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 Total: -1.00 -76.24 423.65 0.51 -75.73 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.66 Total: 27.44 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.72 Total: -13.20 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -3.89 Total: -89.87 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.52 Total: -37.16 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -76.24 0.51 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224911151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.302 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds