Wall clock time and date at job start Wed Apr 1 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 H 1.09003 * 109.47164 * 305.08754 * 3 2 1 5 5 C 1.52993 * 109.47461 * 185.08462 * 3 2 1 6 6 N 1.46903 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.46900 * 110.99979 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47348 * 34.99750 * 7 6 5 9 9 C 1.52995 * 109.47108 * 274.99513 * 7 6 5 10 10 C 1.52996 * 109.47500 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47245 * 59.99877 * 10 9 7 12 12 C 1.52995 * 109.46972 * 300.00446 * 11 10 9 13 13 C 1.52996 * 109.47500 * 59.99710 * 12 11 10 14 14 H 1.09002 * 109.46878 * 59.99810 * 13 12 11 15 15 N 1.46505 * 109.47372 * 179.97438 * 13 12 11 16 16 C 1.34778 * 120.00133 * 275.00230 * 15 13 12 17 17 O 1.21288 * 119.99908 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99975 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47137 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00005 * 179.97438 * 19 18 16 21 21 H 1.07990 * 120.00293 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99683 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99574 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00241 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47094 * 90.00363 * 24 22 20 26 26 H 1.48508 * 109.47272 * 210.00059 * 24 22 20 27 27 H 1.48499 * 109.47214 * 330.00134 * 24 22 20 28 28 O 1.42903 * 109.46924 * 65.08291 * 3 2 1 29 29 C 1.42892 * 114.00286 * 259.14932 * 28 3 2 30 30 H 1.08992 * 109.47548 * 54.21504 * 1 2 3 31 31 H 1.09013 * 109.46617 * 174.21097 * 1 2 3 32 32 H 1.08997 * 109.47167 * 294.20421 * 1 2 3 33 33 H 1.08998 * 109.47488 * 240.00210 * 2 1 3 34 34 H 1.08999 * 109.47442 * 119.99978 * 2 1 3 35 35 H 1.08995 * 109.47349 * 60.00169 * 5 3 2 36 36 H 1.09003 * 109.47170 * 300.00288 * 5 3 2 37 37 H 1.00896 * 110.99927 * 56.04266 * 6 5 3 38 38 H 1.09002 * 109.47210 * 300.00322 * 9 7 6 39 39 H 1.08999 * 109.47200 * 60.00085 * 9 7 6 40 40 H 1.08996 * 109.47290 * 180.02562 * 10 9 7 41 41 H 1.09002 * 109.46878 * 300.00190 * 10 9 7 42 42 H 1.09002 * 109.46927 * 60.00342 * 11 10 9 43 43 H 1.08996 * 109.47215 * 180.02562 * 11 10 9 44 44 H 1.08999 * 109.47200 * 179.97438 * 12 11 10 45 45 H 1.09002 * 109.47210 * 299.99723 * 12 11 10 46 46 H 0.96997 * 119.99770 * 95.00159 * 15 13 12 47 47 H 1.09002 * 109.47153 * 299.99801 * 18 16 15 48 48 H 1.08998 * 109.47234 * 60.00186 * 18 16 15 49 49 H 0.97006 * 120.00251 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.47280 * 185.64933 * 29 28 3 51 51 H 1.09002 * 109.47418 * 305.64925 * 29 28 3 52 52 H 1.08998 * 109.47448 * 65.64698 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6041 1.9820 -0.8409 5 6 3.5645 1.4445 -0.1278 6 7 4.0542 2.8295 -0.1272 7 6 5.5175 2.8706 -0.2494 8 1 5.8514 2.0574 -0.8939 9 6 6.1494 2.7160 1.1354 10 6 7.6735 2.7594 1.0084 11 6 8.0968 4.0985 0.4013 12 6 7.4649 4.2531 -0.9835 13 6 5.9408 4.2097 -0.8565 14 1 5.6067 5.0227 -0.2118 15 7 5.3358 4.3583 -2.1825 16 6 5.1289 5.5876 -2.6949 17 8 5.4431 6.5708 -2.0581 18 6 4.5060 5.7404 -4.0585 19 16 4.3620 7.4989 -4.4624 20 6 3.6264 7.3867 -6.0596 21 1 3.4081 6.4193 -6.4868 22 6 3.3286 8.5419 -6.7691 23 7 2.7796 8.4581 -7.9625 24 14 3.7070 10.2154 -6.0305 25 1 5.0796 10.6287 -6.4181 26 1 2.7287 11.2121 -6.5356 27 1 3.6132 10.1359 -4.5506 28 8 1.6635 2.0808 1.2219 29 6 0.5240 2.9349 1.1045 30 1 -0.3634 0.6009 -0.8336 31 1 -0.3633 -1.0226 -0.1037 32 1 -0.3633 0.4213 0.9373 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8517 0.9577 -1.0598 36 1 4.0004 0.9050 0.7131 37 1 3.7459 3.3217 0.6979 38 1 5.8156 3.5293 1.7799 39 1 5.8476 1.7622 1.5681 40 1 8.1236 2.6489 1.9949 41 1 8.0076 1.9464 0.3638 42 1 7.7626 4.9115 1.0459 43 1 9.1825 4.1292 0.3104 44 1 7.7660 5.2072 -1.4159 45 1 7.7990 3.4401 -1.6281 46 1 5.0841 3.5719 -2.6916 47 1 5.1328 5.2475 -4.8016 48 1 3.5157 5.2849 -4.0588 49 1 2.5717 9.2654 -8.4586 50 1 0.3632 3.4578 2.0473 51 1 0.6949 3.6618 0.3105 52 1 -0.3555 2.3367 0.8662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224911153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:10 Heat of formation + Delta-G solvation = -111.174714 kcal Electronic energy + Delta-G solvation = -28779.741822 eV Core-core repulsion = 24904.255485 eV Total energy + Delta-G solvation = -3875.486337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.08166 -38.96470 -38.07718 -35.13912 -33.92572 -33.50539 -32.39988 -30.47922 -30.26373 -28.49288 -27.39044 -26.02813 -25.55982 -23.35915 -22.68843 -21.82223 -21.38248 -20.29454 -19.99880 -17.81347 -17.19417 -16.77290 -16.27100 -15.92828 -15.75250 -15.19611 -14.94674 -14.92579 -14.75833 -14.34807 -14.17640 -13.97651 -13.91404 -13.49644 -13.41572 -13.06515 -13.03714 -12.75462 -12.74729 -12.65123 -12.48246 -12.04102 -11.95017 -11.54135 -11.45184 -11.38360 -11.31095 -11.22859 -11.08805 -10.97762 -10.94346 -10.84323 -10.56191 -10.43788 -9.81644 -9.72937 -9.35477 -8.96794 -8.74419 -8.56525 -8.43537 -6.85719 -6.25356 -3.95869 2.85807 3.14362 3.35283 3.40481 3.51249 3.53946 3.71540 3.77851 4.36815 4.44858 4.54075 4.60485 4.66728 4.74953 4.77876 4.83173 4.87063 4.97138 5.04997 5.09535 5.13501 5.13882 5.19930 5.21771 5.23400 5.25784 5.36876 5.40325 5.45143 5.47758 5.53241 5.60931 5.62147 5.68400 5.74763 5.78353 5.79523 5.86443 5.91699 5.93302 5.94334 6.11242 6.15852 6.22254 6.75655 6.78821 6.94729 7.17669 7.83677 7.97982 8.45601 8.68397 9.21225 10.84004 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.002898 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.266793 B = 9658.933188 C =11936.400548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.088 3.912 4 H 0.073 0.927 5 C 0.060 3.940 6 N -0.679 5.679 7 C 0.083 3.917 8 H 0.081 0.919 9 C -0.144 4.144 10 C -0.116 4.116 11 C -0.117 4.117 12 C -0.131 4.131 13 C 0.163 3.837 14 H 0.085 0.915 15 N -0.717 5.717 16 C 0.533 3.467 17 O -0.525 6.525 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.087 0.913 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 O -0.385 6.385 29 C 0.028 3.972 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.350 0.650 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.398 0.602 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.270 0.730 50 H 0.082 0.918 51 H 0.048 0.952 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -19.724 20.201 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.069 4.069 6 N -0.309 5.309 7 C -0.028 4.028 8 H 0.099 0.901 9 C -0.184 4.184 10 C -0.154 4.154 11 C -0.155 4.155 12 C -0.170 4.170 13 C 0.057 3.943 14 H 0.103 0.897 15 N -0.368 5.368 16 C 0.319 3.681 17 O -0.401 6.401 18 C -0.273 4.273 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.105 0.895 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 O -0.304 6.304 29 C -0.069 4.069 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.231 0.769 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.067 0.933 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.119 -17.925 20.588 27.475 hybrid contribution -0.399 -1.061 -0.350 1.187 sum 2.720 -18.987 20.237 27.883 Atomic orbital electron populations 1.21826 0.95528 1.01823 1.01987 1.21954 0.96636 0.96682 1.02623 1.22279 0.94302 0.92868 0.87567 0.90875 1.22147 0.93567 0.90279 1.00956 1.60486 1.09405 1.13976 1.47061 1.21844 0.87336 0.97677 0.95959 0.90126 1.22211 0.96429 1.02147 0.97586 1.21502 0.95071 0.97962 1.00880 1.21505 1.00263 0.97337 0.96431 1.21959 0.94982 1.02899 0.97193 1.20781 0.91694 0.97031 0.84787 0.89654 1.45747 1.64386 1.08008 1.18681 1.20181 0.77694 0.82840 0.87425 1.90682 1.50498 1.37823 1.61063 1.23261 1.03679 1.04291 0.96047 1.84758 1.81894 1.01590 1.23425 1.22336 1.46393 0.97603 1.00395 0.89474 1.24714 0.93446 0.99110 0.94083 1.69944 1.40907 1.29673 1.11377 0.86732 0.79091 0.83596 0.82418 1.19255 1.20021 1.15887 1.87831 1.47928 1.62288 1.32341 1.22913 0.88087 0.93334 1.02529 0.92675 0.92607 0.92291 0.90973 0.91305 0.90014 0.94584 0.83053 0.91393 0.91783 0.91949 0.91948 0.91672 0.91717 0.90799 0.91898 0.76867 0.88829 0.88634 0.92008 0.89990 0.93345 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.86 37.16 0.33 -0.72 16 2 C -0.14 -0.97 5.64 -26.73 -0.15 -1.12 16 3 C 0.09 0.72 2.54 -26.73 -0.07 0.65 16 4 H 0.07 0.66 7.60 -51.93 -0.39 0.27 16 5 C 0.06 0.46 5.22 -3.83 -0.02 0.44 16 6 N -0.68 -6.17 6.08 -106.73 -0.65 -6.82 16 7 C 0.08 0.71 1.99 -67.71 -0.13 0.57 16 8 H 0.08 0.65 7.80 -51.93 -0.40 0.24 16 9 C -0.14 -1.09 5.17 -26.74 -0.14 -1.23 16 10 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 11 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 12 C -0.13 -1.40 5.49 -26.74 -0.15 -1.55 16 13 C 0.16 1.86 2.11 -67.93 -0.14 1.72 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 15 N -0.72 -9.40 4.91 -53.80 -0.26 -9.66 16 16 C 0.53 9.63 7.81 -10.99 -0.09 9.54 16 17 O -0.53 -11.44 15.52 5.55 0.09 -11.35 16 18 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 19 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 24 Si 0.86 22.05 27.74 -169.99 -4.71 17.33 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 28 O -0.39 -3.60 9.47 -35.23 -0.33 -3.93 16 29 C 0.03 0.23 10.48 101.05 1.06 1.28 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.42 6.58 -51.93 -0.34 0.08 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.57 8.05 -51.93 -0.42 0.16 16 36 H 0.04 0.28 7.44 -51.93 -0.39 -0.11 16 37 H 0.35 3.48 7.86 -39.29 -0.31 3.17 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 39 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 47 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 48 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 49 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.43 7.99 -51.93 -0.41 0.01 16 52 H 0.04 0.31 6.00 -51.93 -0.31 0.00 16 LS Contribution 419.33 15.07 6.32 6.32 Total: -1.00 -33.31 419.33 -9.76 -43.07 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -9.61 Total: 3.72 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 0.62 Total: -6.91 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.14 Total: -42.58 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.25 Total: -15.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.31 -9.76 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224911153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.105 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds