Wall clock time and date at job start Wed Apr 1 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 H 1.09003 * 109.47164 * 305.08754 * 3 2 1 5 5 C 1.52993 * 109.47461 * 185.08462 * 3 2 1 6 6 N 1.46903 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.46900 * 110.99979 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47348 * 34.99750 * 7 6 5 9 9 C 1.52995 * 109.47108 * 274.99513 * 7 6 5 10 10 C 1.52996 * 109.47500 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47245 * 59.99877 * 10 9 7 12 12 C 1.52995 * 109.46972 * 300.00446 * 11 10 9 13 13 C 1.52996 * 109.47500 * 59.99710 * 12 11 10 14 14 H 1.09002 * 109.46878 * 59.99810 * 13 12 11 15 15 N 1.46505 * 109.47372 * 179.97438 * 13 12 11 16 16 C 1.34778 * 120.00133 * 275.00230 * 15 13 12 17 17 O 1.21288 * 119.99908 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99975 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47137 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00005 * 179.97438 * 19 18 16 21 21 H 1.07990 * 120.00293 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99683 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99574 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00241 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47094 * 90.00363 * 24 22 20 26 26 H 1.48508 * 109.47272 * 210.00059 * 24 22 20 27 27 H 1.48499 * 109.47214 * 330.00134 * 24 22 20 28 28 O 1.42903 * 109.46924 * 65.08291 * 3 2 1 29 29 C 1.42892 * 114.00286 * 259.14932 * 28 3 2 30 30 H 1.08992 * 109.47548 * 54.21504 * 1 2 3 31 31 H 1.09013 * 109.46617 * 174.21097 * 1 2 3 32 32 H 1.08997 * 109.47167 * 294.20421 * 1 2 3 33 33 H 1.08998 * 109.47488 * 240.00210 * 2 1 3 34 34 H 1.08999 * 109.47442 * 119.99978 * 2 1 3 35 35 H 1.08995 * 109.47349 * 60.00169 * 5 3 2 36 36 H 1.09003 * 109.47170 * 300.00288 * 5 3 2 37 37 H 1.00896 * 110.99927 * 56.04266 * 6 5 3 38 38 H 1.09002 * 109.47210 * 300.00322 * 9 7 6 39 39 H 1.08999 * 109.47200 * 60.00085 * 9 7 6 40 40 H 1.08996 * 109.47290 * 180.02562 * 10 9 7 41 41 H 1.09002 * 109.46878 * 300.00190 * 10 9 7 42 42 H 1.09002 * 109.46927 * 60.00342 * 11 10 9 43 43 H 1.08996 * 109.47215 * 180.02562 * 11 10 9 44 44 H 1.08999 * 109.47200 * 179.97438 * 12 11 10 45 45 H 1.09002 * 109.47210 * 299.99723 * 12 11 10 46 46 H 0.96997 * 119.99770 * 95.00159 * 15 13 12 47 47 H 1.09002 * 109.47153 * 299.99801 * 18 16 15 48 48 H 1.08998 * 109.47234 * 60.00186 * 18 16 15 49 49 H 0.97006 * 120.00251 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.47280 * 185.64933 * 29 28 3 51 51 H 1.09002 * 109.47418 * 305.64925 * 29 28 3 52 52 H 1.08998 * 109.47448 * 65.64698 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6041 1.9820 -0.8409 5 6 3.5645 1.4445 -0.1278 6 7 4.0542 2.8295 -0.1272 7 6 5.5175 2.8706 -0.2494 8 1 5.8514 2.0574 -0.8939 9 6 6.1494 2.7160 1.1354 10 6 7.6735 2.7594 1.0084 11 6 8.0968 4.0985 0.4013 12 6 7.4649 4.2531 -0.9835 13 6 5.9408 4.2097 -0.8565 14 1 5.6067 5.0227 -0.2118 15 7 5.3358 4.3583 -2.1825 16 6 5.1289 5.5876 -2.6949 17 8 5.4431 6.5708 -2.0581 18 6 4.5060 5.7404 -4.0585 19 16 4.3620 7.4989 -4.4624 20 6 3.6264 7.3867 -6.0596 21 1 3.4081 6.4193 -6.4868 22 6 3.3286 8.5419 -6.7691 23 7 2.7796 8.4581 -7.9625 24 14 3.7070 10.2154 -6.0305 25 1 5.0796 10.6287 -6.4181 26 1 2.7287 11.2121 -6.5356 27 1 3.6132 10.1359 -4.5506 28 8 1.6635 2.0808 1.2219 29 6 0.5240 2.9349 1.1045 30 1 -0.3634 0.6009 -0.8336 31 1 -0.3633 -1.0226 -0.1037 32 1 -0.3633 0.4213 0.9373 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8517 0.9577 -1.0598 36 1 4.0004 0.9050 0.7131 37 1 3.7459 3.3217 0.6979 38 1 5.8156 3.5293 1.7799 39 1 5.8476 1.7622 1.5681 40 1 8.1236 2.6489 1.9949 41 1 8.0076 1.9464 0.3638 42 1 7.7626 4.9115 1.0459 43 1 9.1825 4.1292 0.3104 44 1 7.7660 5.2072 -1.4159 45 1 7.7990 3.4401 -1.6281 46 1 5.0841 3.5719 -2.6916 47 1 5.1328 5.2475 -4.8016 48 1 3.5157 5.2849 -4.0588 49 1 2.5717 9.2654 -8.4586 50 1 0.3632 3.4578 2.0473 51 1 0.6949 3.6618 0.3105 52 1 -0.3555 2.3367 0.8662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224911153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:08 Heat of formation + Delta-G solvation = -134.390078 kcal Electronic energy + Delta-G solvation = -28780.748515 eV Core-core repulsion = 24904.255485 eV Total energy + Delta-G solvation = -3876.493030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12303 -39.81289 -39.07408 -35.84480 -35.10526 -34.66395 -34.10826 -31.68852 -30.99432 -29.56480 -28.21948 -27.81205 -26.68974 -24.01982 -23.52822 -22.54600 -22.00800 -21.47420 -20.95592 -19.81246 -17.87037 -17.83112 -17.66944 -17.10177 -16.70222 -16.51639 -16.31848 -16.00263 -15.68316 -15.49273 -15.15473 -14.93540 -14.76002 -14.73919 -14.62343 -14.13548 -13.99185 -13.83125 -13.66793 -13.47480 -13.33866 -13.20148 -13.06518 -13.00231 -12.64099 -12.59561 -12.23163 -12.14377 -12.10119 -11.92992 -11.88774 -11.78923 -11.56610 -11.54933 -11.25026 -11.16634 -10.85434 -10.51633 -10.38198 -9.93525 -9.26852 -8.97793 -8.51192 -6.21222 1.00982 1.31266 1.47657 1.57708 1.67759 2.24906 2.33289 2.74510 2.87051 2.88919 3.04344 3.69794 3.82290 3.94658 4.00982 4.07817 4.13129 4.15621 4.19618 4.23339 4.29588 4.40910 4.42010 4.46739 4.49575 4.49983 4.53312 4.55981 4.63330 4.74112 4.82810 4.85644 4.86600 4.95054 4.99237 5.07599 5.10076 5.14037 5.15923 5.20292 5.24650 5.34717 5.38874 5.46612 5.62517 5.71347 6.10647 6.11756 6.30214 6.41806 6.60894 6.94212 7.32630 8.61385 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.002898 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.266793 B = 9658.933188 C =11936.400548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.087 3.913 4 H 0.061 0.939 5 C 0.064 3.936 6 N -0.690 5.690 7 C 0.093 3.907 8 H 0.098 0.902 9 C -0.138 4.138 10 C -0.110 4.110 11 C -0.114 4.114 12 C -0.127 4.127 13 C 0.163 3.837 14 H 0.057 0.943 15 N -0.692 5.692 16 C 0.536 3.464 17 O -0.567 6.567 18 C -0.109 4.109 19 S -0.175 6.175 20 C -0.528 4.528 21 H 0.061 0.939 22 C 0.046 3.954 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.238 1.238 28 O -0.397 6.397 29 C 0.028 3.972 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.344 0.656 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.412 0.588 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.277 0.723 50 H 0.089 0.911 51 H 0.036 0.964 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -21.642 21.528 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 C 0.029 3.971 4 H 0.079 0.921 5 C -0.065 4.065 6 N -0.320 5.320 7 C -0.018 4.018 8 H 0.116 0.884 9 C -0.178 4.178 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.075 0.925 15 N -0.343 5.343 16 C 0.322 3.678 17 O -0.446 6.446 18 C -0.260 4.260 19 S 0.051 5.949 20 C -0.676 4.676 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.162 1.162 28 O -0.317 6.317 29 C -0.069 4.069 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.163 0.837 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.248 0.752 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.086 0.914 50 H 0.108 0.892 51 H 0.055 0.945 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.948 -19.903 21.913 29.865 hybrid contribution -0.662 -0.612 -0.735 1.163 sum 3.285 -20.515 21.179 29.668 Atomic orbital electron populations 1.21822 0.95602 1.02236 1.01503 1.21928 0.96564 0.95801 1.03187 1.22344 0.94690 0.93376 0.86729 0.92121 1.22170 0.93107 0.89439 1.01791 1.60470 1.09678 1.14966 1.46909 1.21751 0.87297 0.95977 0.96755 0.88421 1.22155 0.96686 1.02414 0.96506 1.21475 0.94629 0.97051 1.01672 1.21487 1.00673 0.98169 0.94929 1.21898 0.94259 1.01721 0.98718 1.20929 0.92208 0.97986 0.83106 0.92486 1.45562 1.62701 1.06794 1.19239 1.19864 0.77600 0.83817 0.86562 1.90673 1.52624 1.39461 1.61858 1.23247 1.05119 0.99841 0.97754 1.84690 1.81540 1.07353 1.21291 1.22469 1.46421 0.96679 1.01993 0.92080 1.25557 0.93305 1.02621 0.94480 1.70018 1.41918 1.31064 1.12589 0.85868 0.79434 0.79637 0.81440 1.18678 1.18278 1.16156 1.87808 1.48319 1.62520 1.33021 1.22941 0.88154 0.93188 1.02572 0.93078 0.91752 0.92859 0.89798 0.91248 0.88774 0.93994 0.83746 0.92374 0.90501 0.90756 0.90644 0.92843 0.90753 0.94039 0.90289 0.75158 0.87219 0.87363 0.91374 0.89222 0.94510 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.86 71.98 0.64 -1.25 16 2 C -0.14 -1.64 5.64 30.59 0.17 -1.46 16 3 C 0.09 1.29 2.54 30.59 0.08 1.37 16 4 H 0.06 1.05 7.60 -2.39 -0.02 1.03 16 5 C 0.06 0.84 5.22 86.30 0.45 1.29 16 6 N -0.69 -11.36 6.08 -491.58 -2.99 -14.35 16 7 C 0.09 1.37 1.99 44.91 0.09 1.46 16 8 H 0.10 1.18 7.80 -2.39 -0.02 1.16 16 9 C -0.14 -1.74 5.17 30.59 0.16 -1.58 16 10 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 11 C -0.11 -1.81 5.92 30.59 0.18 -1.62 16 12 C -0.13 -2.56 5.49 30.59 0.17 -2.40 16 13 C 0.16 3.55 2.11 44.99 0.10 3.65 16 14 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 15 N -0.69 -17.26 4.91 -442.52 -2.17 -19.43 16 16 C 0.54 19.15 7.81 87.66 0.68 19.83 16 17 O -0.57 -25.00 15.52 -3.05 -0.05 -25.05 16 18 C -0.11 -4.24 6.16 71.23 0.44 -3.80 16 19 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 20 C -0.53 -31.24 10.04 67.95 0.68 -30.56 16 21 H 0.06 3.81 8.03 -2.92 -0.02 3.78 16 22 C 0.05 2.71 5.50 84.86 0.47 3.18 16 23 N -0.92 -56.47 13.97 21.65 0.30 -56.17 16 24 Si 0.91 45.68 27.74 68.60 1.90 47.58 16 25 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 28 O -0.40 -7.05 9.47 -148.98 -1.41 -8.46 16 29 C 0.03 0.44 10.48 113.37 1.19 1.63 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.71 6.58 -2.39 -0.02 0.69 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.01 8.05 -2.39 -0.02 1.00 16 36 H 0.04 0.52 7.44 -2.39 -0.02 0.50 16 37 H 0.34 6.50 7.86 -89.70 -0.71 5.80 16 38 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 39 H 0.08 0.83 7.45 -2.39 -0.02 0.81 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.41 8.07 8.60 -92.71 -0.80 7.27 16 47 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 48 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 49 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.04 0.65 7.99 -2.39 -0.02 0.63 16 52 H 0.05 0.70 6.00 -2.39 -0.01 0.69 16 Total: -1.00 -72.99 419.33 -0.43 -73.42 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.64 Total: 23.91 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.67 Total: -11.34 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -4.86 Total: -89.95 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.46 Total: -33.51 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.58 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -72.99 -0.43 -73.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224911153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.969 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds