Wall clock time and date at job start Wed Apr 1 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47330 * 2 1 4 4 H 1.09002 * 109.47088 * 306.81451 * 3 2 1 5 5 C 1.50698 * 109.47215 * 186.81543 * 3 2 1 6 6 H 1.07999 * 119.99862 * 239.99667 * 5 3 2 7 7 C 1.37878 * 119.99749 * 60.00146 * 5 3 2 8 8 N 1.31515 * 120.00169 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99880 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47020 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46872 * 119.99755 * 9 7 5 12 12 H 1.48496 * 109.46858 * 239.99807 * 9 7 5 13 13 N 1.46901 * 109.47434 * 66.81439 * 3 2 1 14 14 C 1.46850 * 110.99818 * 61.91347 * 13 3 2 15 15 C 1.53032 * 109.55071 * 185.88656 * 14 13 3 16 16 C 1.53140 * 109.26697 * 300.76904 * 15 14 13 17 17 C 1.52983 * 109.17650 * 57.48125 * 16 15 14 18 18 C 1.53055 * 109.63161 * 182.22868 * 17 16 15 19 19 C 1.53058 * 109.32367 * 185.75729 * 18 17 16 20 20 C 1.53036 * 109.53133 * 61.17598 * 19 18 17 21 21 C 1.53187 * 109.36466 * 298.57749 * 20 19 18 22 22 N 1.46791 * 109.49346 * 62.67373 * 17 16 15 23 23 S 1.65599 * 120.63504 * 353.31346 * 22 17 16 24 24 C 1.81403 * 104.44989 * 268.93083 * 23 22 17 25 25 O 1.42103 * 104.27841 * 24.99799 * 23 22 17 26 26 O 1.42102 * 104.28196 * 152.85993 * 23 22 17 27 27 C 1.46869 * 111.00377 * 186.10136 * 13 3 2 28 28 H 1.08999 * 109.47115 * 305.56783 * 1 2 3 29 29 H 1.08994 * 109.46909 * 65.56397 * 1 2 3 30 30 H 1.08997 * 109.47205 * 185.56657 * 1 2 3 31 31 H 1.08999 * 109.47138 * 239.99594 * 2 1 3 32 32 H 1.08999 * 109.46887 * 119.99915 * 2 1 3 33 33 H 0.97003 * 119.99882 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46019 * 65.85948 * 14 13 3 35 35 H 1.09004 * 109.44431 * 305.90629 * 14 13 3 36 36 H 1.09008 * 109.50156 * 180.83404 * 15 14 13 37 37 H 1.08997 * 109.53937 * 60.73210 * 15 14 13 38 38 H 1.09001 * 109.52281 * 297.57281 * 16 15 14 39 39 H 1.09006 * 109.57191 * 177.42548 * 16 15 14 40 40 H 1.09000 * 109.49362 * 65.79859 * 18 17 16 41 41 H 1.08997 * 109.49133 * 305.71313 * 18 17 16 42 42 H 1.09002 * 109.46366 * 301.15075 * 19 18 17 43 43 H 1.09009 * 109.44971 * 181.18632 * 19 18 17 44 44 H 1.08995 * 109.49121 * 58.55243 * 20 19 18 45 45 H 1.09006 * 109.48851 * 178.60655 * 20 19 18 46 46 H 1.09000 * 109.58987 * 174.49421 * 21 20 19 47 47 H 1.09002 * 109.59221 * 294.92545 * 21 20 19 48 48 H 1.09005 * 109.47009 * 43.01599 * 24 23 22 49 49 H 1.09000 * 109.47097 * 163.00953 * 24 23 22 50 50 H 1.09000 * 109.47319 * 283.01601 * 24 23 22 51 51 H 1.09001 * 109.45446 * 54.32164 * 27 13 3 52 52 H 1.08996 * 109.46331 * 294.36700 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5806 1.9903 -0.8227 5 6 3.5376 1.4457 -0.1686 6 1 4.1658 1.8822 0.5937 7 6 4.1055 0.8916 -1.2962 8 7 3.3405 0.3597 -2.2243 9 14 5.9619 0.8951 -1.5049 10 1 6.5910 1.5478 -0.3287 11 1 6.4501 -0.5029 -1.6158 12 1 6.3201 1.6437 -2.7363 13 7 1.6892 2.0859 1.2731 14 6 2.3291 1.4003 2.4032 15 6 1.8278 2.0024 3.7178 16 6 2.1621 3.4966 3.7491 17 6 1.5293 4.1787 2.5348 18 6 1.9032 5.6628 2.5258 19 6 1.1525 6.3674 1.3932 20 6 -0.3552 6.2466 1.6259 21 6 -0.7531 4.7673 1.6204 22 7 0.0685 4.0539 2.6089 23 16 -0.6407 3.1276 3.7841 24 6 -0.7987 1.4846 3.0315 25 8 0.3144 3.1043 4.8361 26 8 -1.9207 3.7162 3.9696 27 6 2.0344 3.5134 1.2542 28 1 -0.3633 0.5977 0.8359 29 1 -0.3633 0.4251 -0.9356 30 1 -0.3633 -1.0228 0.0997 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7401 -0.0298 -3.0177 34 1 3.4102 1.5222 2.3369 35 1 2.0807 0.3394 2.3717 36 1 2.3144 1.5030 4.5557 37 1 0.7486 1.8693 3.7916 38 1 3.2437 3.6286 3.7184 39 1 1.7670 3.9401 4.6631 40 1 2.9771 5.7664 2.3701 41 1 1.6284 6.1130 3.4796 42 1 1.4115 5.9029 0.4417 43 1 1.4334 7.4205 1.3715 44 1 -0.6111 6.6885 2.5889 45 1 -0.8888 6.7697 0.8323 46 1 -1.8068 4.6713 1.8824 47 1 -0.5809 4.3462 0.6299 48 1 0.1185 1.2408 2.4954 49 1 -0.9717 0.7429 3.8113 50 1 -1.6377 1.4828 2.3357 51 1 1.5689 3.9880 0.3904 52 1 3.1168 3.6244 1.1897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:33 Heat of formation + Delta-G solvation = 11.469003 kcal Electronic energy + Delta-G solvation = -33102.396462 eV Core-core repulsion = 29232.228356 eV Total energy + Delta-G solvation = -3870.168106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.36010 -37.70811 -36.88690 -35.80639 -34.05722 -32.27511 -32.03063 -31.25153 -30.86788 -28.97162 -26.80066 -26.35863 -24.07479 -23.78057 -22.49344 -22.22382 -20.39507 -19.83752 -19.05523 -18.20695 -17.19242 -16.58107 -15.89758 -15.74961 -15.29134 -15.11950 -14.71475 -14.30543 -14.11518 -13.94878 -13.69107 -13.57347 -13.28594 -12.95223 -12.83509 -12.70595 -12.49978 -12.22242 -12.03186 -11.96026 -11.88199 -11.69966 -11.46535 -11.33079 -11.10008 -11.01003 -10.97688 -10.83624 -10.68262 -10.65332 -10.44886 -10.32426 -10.13519 -9.94768 -9.70081 -9.58231 -9.41872 -9.26495 -9.14071 -8.48616 -8.42068 -7.22480 -6.05724 -4.18902 0.61077 2.88344 3.20521 3.30108 3.32558 4.13062 4.33603 4.38832 4.59637 4.87671 4.97732 5.05787 5.13402 5.18977 5.22831 5.31276 5.35428 5.47369 5.48377 5.59847 5.71121 5.75990 5.86376 5.92228 5.99325 6.04891 6.15008 6.18737 6.21217 6.23228 6.25796 6.36590 6.38648 6.41719 6.46031 6.50062 6.57136 6.62479 6.66559 6.76139 6.94458 7.01097 7.05057 7.11180 7.26164 7.53954 7.69196 7.88370 8.07209 8.23181 8.38350 8.90932 9.49186 10.93382 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.005015 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.905278 B = 5581.886561 C = 6141.020038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.216 3.784 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.535 5.535 14 C 0.032 3.968 15 C -0.119 4.119 16 C -0.136 4.136 17 C 0.189 3.811 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.127 4.127 21 C 0.121 3.879 22 N -0.967 5.967 23 S 2.600 3.400 24 C -0.689 4.689 25 O -0.953 6.953 26 O -0.984 6.984 27 C 0.060 3.940 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.025 0.975 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.181 0.819 49 H 0.114 0.886 50 H 0.118 0.882 51 H 0.072 0.928 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 7.021 8.275 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C 0.110 3.890 4 H 0.057 0.943 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.259 5.259 14 C -0.096 4.096 15 C -0.158 4.158 16 C -0.176 4.176 17 C 0.101 3.899 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.166 4.166 21 C -0.004 4.004 22 N -0.804 5.804 23 S 2.699 3.301 24 C -0.838 4.838 25 O -0.943 6.943 26 O -0.974 6.974 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.199 0.801 49 H 0.133 0.867 50 H 0.137 0.863 51 H 0.090 0.910 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.308 7.157 9.011 13.632 hybrid contribution 2.107 -0.624 -1.036 2.430 sum -5.200 6.533 7.975 11.547 Atomic orbital electron populations 1.21925 0.99085 0.98859 1.00938 1.21665 0.92162 0.99390 1.02119 1.19252 0.93433 0.91103 0.85202 0.94256 1.21750 0.92957 1.38557 1.04778 0.92440 1.24895 0.97597 0.95029 0.95842 1.69875 1.34495 1.38768 1.09161 0.86649 0.86283 0.77701 0.77994 1.19968 1.21083 1.21099 1.62355 1.57182 1.01275 1.05101 1.22346 0.98307 0.98672 0.90296 1.22728 0.99579 0.96007 0.97441 1.22595 1.00459 0.96105 0.98395 1.20461 0.78054 0.94667 0.96695 1.21798 1.00219 0.94409 0.99099 1.21524 0.94882 0.99959 0.99325 1.21812 0.96572 0.96252 1.01950 1.21378 0.94365 0.91791 0.92906 1.57275 1.13427 1.61702 1.48038 1.05448 0.72426 0.76803 0.75468 1.31039 1.14678 1.23716 1.14385 1.93782 1.57540 1.86423 1.56575 1.93473 1.42985 1.75534 1.85457 1.22210 0.98942 0.90020 0.95827 0.92604 0.94154 0.95564 0.88835 0.94796 0.92959 0.93547 0.90851 0.90971 0.93961 0.91688 0.86298 0.91013 0.91699 0.91109 0.92280 0.91850 0.91250 0.89611 0.90937 0.80145 0.86711 0.86350 0.90953 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.87 37.16 0.37 -2.42 16 2 C -0.12 -2.48 5.14 -26.73 -0.14 -2.62 16 3 C 0.22 4.75 1.72 -68.87 -0.12 4.63 16 4 H 0.04 0.97 8.06 -51.93 -0.42 0.56 16 5 C -0.54 -13.30 7.19 -34.44 -0.25 -13.54 16 6 H 0.06 1.43 5.84 -52.49 -0.31 1.12 16 7 C 0.07 1.77 5.28 -17.82 -0.09 1.67 16 8 N -0.88 -23.60 11.29 55.43 0.63 -22.97 16 9 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.54 -9.58 2.61 -228.15 -0.60 -10.18 16 14 C 0.03 0.56 3.73 -3.83 -0.01 0.55 16 15 C -0.12 -1.81 4.28 -26.64 -0.11 -1.93 16 16 C -0.14 -1.99 4.23 -26.67 -0.11 -2.11 16 17 C 0.19 2.67 0.67 -131.69 -0.09 2.58 16 18 C -0.12 -1.41 4.84 -26.67 -0.13 -1.54 16 19 C -0.12 -1.33 5.68 -26.68 -0.15 -1.49 16 20 C -0.13 -1.38 6.07 -26.62 -0.16 -1.54 16 21 C 0.12 1.50 6.02 -3.67 -0.02 1.47 16 22 N -0.97 -13.27 2.77 -99.88 -0.28 -13.55 16 23 S 2.60 37.27 5.34 -107.50 -0.57 36.70 16 24 C -0.69 -9.04 8.33 101.05 0.84 -8.20 16 25 O -0.95 -14.81 10.83 -57.54 -0.62 -15.43 16 26 O -0.98 -16.34 16.62 -57.54 -0.96 -17.29 16 27 C 0.06 1.00 3.58 -3.89 -0.01 0.98 16 28 H 0.06 0.93 4.55 -51.93 -0.24 0.70 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 2.33 5.92 -51.93 -0.31 2.02 16 32 H 0.03 0.72 6.01 -51.93 -0.31 0.41 16 33 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.05 0.90 6.57 -51.93 -0.34 0.55 16 35 H 0.07 1.31 5.84 -51.93 -0.30 1.01 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 37 H 0.04 0.62 1.10 -17.84 -0.02 0.60 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.12 1.79 5.63 -44.88 -0.25 1.54 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.85 6.54 -51.93 -0.34 0.51 16 43 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.03 6.89 -51.93 -0.36 0.67 16 47 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 48 H 0.18 2.68 2.11 -51.92 -0.11 2.57 16 49 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 50 H 0.12 1.42 7.83 -51.92 -0.41 1.01 16 51 H 0.07 1.22 5.68 -51.93 -0.29 0.92 16 52 H 0.05 0.88 7.03 -51.93 -0.36 0.51 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -28.10 359.75 -10.32 -38.41 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.12 Total: 7.15 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -0.20 Total: -23.51 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.25 Total: -46.69 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.58 Total: -32.72 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 37.27 SS G_CDS: -0.57 Total: 36.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.10 -10.32 -38.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.882 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds