Wall clock time and date at job start Wed Apr 1 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47330 * 2 1 4 4 H 1.09002 * 109.47088 * 306.81451 * 3 2 1 5 5 C 1.50698 * 109.47215 * 186.81543 * 3 2 1 6 6 H 1.07999 * 119.99862 * 239.99667 * 5 3 2 7 7 C 1.37878 * 119.99749 * 60.00146 * 5 3 2 8 8 N 1.31515 * 120.00169 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99880 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47020 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46872 * 119.99755 * 9 7 5 12 12 H 1.48496 * 109.46858 * 239.99807 * 9 7 5 13 13 N 1.46901 * 109.47434 * 66.81439 * 3 2 1 14 14 C 1.46850 * 110.99818 * 61.91347 * 13 3 2 15 15 C 1.53032 * 109.55071 * 185.88656 * 14 13 3 16 16 C 1.53140 * 109.26697 * 300.76904 * 15 14 13 17 17 C 1.52983 * 109.17650 * 57.48125 * 16 15 14 18 18 C 1.53055 * 109.63161 * 182.22868 * 17 16 15 19 19 C 1.53058 * 109.32367 * 185.75729 * 18 17 16 20 20 C 1.53036 * 109.53133 * 61.17598 * 19 18 17 21 21 C 1.53187 * 109.36466 * 298.57749 * 20 19 18 22 22 N 1.46791 * 109.49346 * 62.67373 * 17 16 15 23 23 S 1.65599 * 120.63504 * 353.31346 * 22 17 16 24 24 C 1.81403 * 104.44989 * 268.93083 * 23 22 17 25 25 O 1.42103 * 104.27841 * 24.99799 * 23 22 17 26 26 O 1.42102 * 104.28196 * 152.85993 * 23 22 17 27 27 C 1.46869 * 111.00377 * 186.10136 * 13 3 2 28 28 H 1.08999 * 109.47115 * 305.56783 * 1 2 3 29 29 H 1.08994 * 109.46909 * 65.56397 * 1 2 3 30 30 H 1.08997 * 109.47205 * 185.56657 * 1 2 3 31 31 H 1.08999 * 109.47138 * 239.99594 * 2 1 3 32 32 H 1.08999 * 109.46887 * 119.99915 * 2 1 3 33 33 H 0.97003 * 119.99882 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46019 * 65.85948 * 14 13 3 35 35 H 1.09004 * 109.44431 * 305.90629 * 14 13 3 36 36 H 1.09008 * 109.50156 * 180.83404 * 15 14 13 37 37 H 1.08997 * 109.53937 * 60.73210 * 15 14 13 38 38 H 1.09001 * 109.52281 * 297.57281 * 16 15 14 39 39 H 1.09006 * 109.57191 * 177.42548 * 16 15 14 40 40 H 1.09000 * 109.49362 * 65.79859 * 18 17 16 41 41 H 1.08997 * 109.49133 * 305.71313 * 18 17 16 42 42 H 1.09002 * 109.46366 * 301.15075 * 19 18 17 43 43 H 1.09009 * 109.44971 * 181.18632 * 19 18 17 44 44 H 1.08995 * 109.49121 * 58.55243 * 20 19 18 45 45 H 1.09006 * 109.48851 * 178.60655 * 20 19 18 46 46 H 1.09000 * 109.58987 * 174.49421 * 21 20 19 47 47 H 1.09002 * 109.59221 * 294.92545 * 21 20 19 48 48 H 1.09005 * 109.47009 * 43.01599 * 24 23 22 49 49 H 1.09000 * 109.47097 * 163.00953 * 24 23 22 50 50 H 1.09000 * 109.47319 * 283.01601 * 24 23 22 51 51 H 1.09001 * 109.45446 * 54.32164 * 27 13 3 52 52 H 1.08996 * 109.46331 * 294.36700 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5806 1.9903 -0.8227 5 6 3.5376 1.4457 -0.1686 6 1 4.1658 1.8822 0.5937 7 6 4.1055 0.8916 -1.2962 8 7 3.3405 0.3597 -2.2243 9 14 5.9619 0.8951 -1.5049 10 1 6.5910 1.5478 -0.3287 11 1 6.4501 -0.5029 -1.6158 12 1 6.3201 1.6437 -2.7363 13 7 1.6892 2.0859 1.2731 14 6 2.3291 1.4003 2.4032 15 6 1.8278 2.0024 3.7178 16 6 2.1621 3.4966 3.7491 17 6 1.5293 4.1787 2.5348 18 6 1.9032 5.6628 2.5258 19 6 1.1525 6.3674 1.3932 20 6 -0.3552 6.2466 1.6259 21 6 -0.7531 4.7673 1.6204 22 7 0.0685 4.0539 2.6089 23 16 -0.6407 3.1276 3.7841 24 6 -0.7987 1.4846 3.0315 25 8 0.3144 3.1043 4.8361 26 8 -1.9207 3.7162 3.9696 27 6 2.0344 3.5134 1.2542 28 1 -0.3633 0.5977 0.8359 29 1 -0.3633 0.4251 -0.9356 30 1 -0.3633 -1.0228 0.0997 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7401 -0.0298 -3.0177 34 1 3.4102 1.5222 2.3369 35 1 2.0807 0.3394 2.3717 36 1 2.3144 1.5030 4.5557 37 1 0.7486 1.8693 3.7916 38 1 3.2437 3.6286 3.7184 39 1 1.7670 3.9401 4.6631 40 1 2.9771 5.7664 2.3701 41 1 1.6284 6.1130 3.4796 42 1 1.4115 5.9029 0.4417 43 1 1.4334 7.4205 1.3715 44 1 -0.6111 6.6885 2.5889 45 1 -0.8888 6.7697 0.8323 46 1 -1.8068 4.6713 1.8824 47 1 -0.5809 4.3462 0.6299 48 1 0.1185 1.2408 2.4954 49 1 -0.9717 0.7429 3.8113 50 1 -1.6377 1.4828 2.3357 51 1 1.5689 3.9880 0.3904 52 1 3.1168 3.6244 1.1897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:32 Heat of formation + Delta-G solvation = -5.294394 kcal Electronic energy + Delta-G solvation = -33103.123378 eV Core-core repulsion = 29232.228356 eV Total energy + Delta-G solvation = -3870.895021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.60137 -38.82821 -38.35492 -37.01386 -35.51630 -33.77860 -33.31391 -32.47067 -32.30138 -30.09692 -28.46399 -27.64998 -25.62805 -24.90126 -23.92776 -23.48543 -21.65756 -20.93032 -20.69254 -19.36808 -18.41597 -18.26415 -17.25374 -17.09656 -16.56828 -16.35501 -16.32116 -15.49722 -15.34765 -15.19096 -14.96776 -14.86053 -14.57256 -14.33094 -14.12421 -13.83927 -13.77125 -13.53620 -13.40865 -13.21298 -13.14387 -13.07223 -13.02238 -12.83887 -12.72168 -12.49227 -12.21706 -12.13342 -12.07668 -11.91396 -11.79039 -11.51121 -11.41678 -11.37752 -11.29628 -11.01617 -10.94383 -10.73978 -10.43139 -10.35569 -9.61880 -8.85736 -7.99235 -6.20550 -0.51508 1.35628 1.40881 1.48147 1.77120 2.41781 3.00731 3.18628 3.22259 3.38282 3.68195 3.88067 4.01526 4.10579 4.19429 4.20964 4.29415 4.32452 4.42570 4.47436 4.49586 4.61276 4.70008 4.77608 4.80584 4.83316 4.92709 4.96838 4.98627 5.07457 5.10548 5.14359 5.19759 5.20733 5.23753 5.25532 5.28056 5.30855 5.40294 5.50291 5.54241 5.57560 5.60049 5.67284 5.75153 5.86006 5.94984 6.12650 6.25695 6.44482 6.72635 7.01671 7.50300 8.94645 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.005015 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.905278 B = 5581.886561 C = 6141.020038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.521 5.521 14 C 0.037 3.963 15 C -0.118 4.118 16 C -0.137 4.137 17 C 0.196 3.804 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.123 4.123 21 C 0.114 3.886 22 N -0.969 5.969 23 S 2.607 3.393 24 C -0.689 4.689 25 O -0.966 6.966 26 O -1.004 7.004 27 C 0.064 3.936 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.259 0.741 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.166 0.834 49 H 0.139 0.861 50 H 0.133 0.867 51 H 0.068 0.932 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 7.770 9.437 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.117 3.883 4 H 0.027 0.973 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.765 3.235 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.244 5.244 14 C -0.091 4.091 15 C -0.156 4.156 16 C -0.176 4.176 17 C 0.108 3.892 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.011 4.011 22 N -0.806 5.806 23 S 2.707 3.293 24 C -0.840 4.840 25 O -0.956 6.956 26 O -0.995 6.995 27 C -0.066 4.066 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.087 0.913 48 H 0.184 0.816 49 H 0.158 0.842 50 H 0.151 0.849 51 H 0.086 0.914 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.026 7.931 10.190 15.204 hybrid contribution 2.322 -0.871 -1.391 2.843 sum -5.704 7.060 8.799 12.642 Atomic orbital electron populations 1.21834 0.96502 1.00283 1.01342 1.21502 0.94483 0.98493 1.00430 1.18989 0.91689 0.91385 0.86187 0.97276 1.22022 0.94472 1.37505 1.04231 0.93140 1.25502 1.00787 0.95253 0.95977 1.69996 1.35657 1.39741 1.09519 0.85824 0.82530 0.77394 0.77713 1.19779 1.21158 1.21097 1.62310 1.56705 1.01826 1.03568 1.22327 0.96931 0.98659 0.91221 1.22771 1.00352 0.96396 0.96101 1.22613 1.00702 0.95676 0.98628 1.20340 0.78329 0.95716 0.94824 1.21811 1.00646 0.92945 1.00065 1.21512 0.95047 1.00757 0.98167 1.21809 0.96421 0.95263 1.02748 1.21537 0.94477 0.92718 0.92330 1.57239 1.13164 1.61995 1.48225 1.05150 0.71747 0.77068 0.75327 1.30986 1.14496 1.23200 1.15270 1.93755 1.57740 1.86731 1.57380 1.93450 1.43861 1.76307 1.85887 1.22207 0.97676 0.89278 0.97415 0.90719 0.94913 0.93911 0.92215 0.94696 0.93186 0.95772 0.91271 0.90007 0.92818 0.91534 0.86006 0.90733 0.90812 0.92275 0.90503 0.91718 0.89369 0.89085 0.91296 0.81648 0.84245 0.84871 0.91367 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.87 71.98 0.71 -4.41 16 2 C -0.11 -4.82 5.14 30.59 0.16 -4.66 16 3 C 0.22 10.04 1.72 44.17 0.08 10.12 16 4 H 0.01 0.47 8.06 -2.39 -0.02 0.45 16 5 C -0.54 -27.22 7.19 25.60 0.18 -27.04 16 6 H 0.05 2.56 5.84 -2.91 -0.02 2.55 16 7 C 0.02 1.28 5.28 84.65 0.45 1.73 16 8 N -0.91 -49.65 11.29 21.45 0.24 -49.41 16 9 Si 0.94 42.14 29.54 68.60 2.03 44.17 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.52 -18.60 2.61 -875.74 -2.29 -20.89 16 14 C 0.04 1.28 3.73 86.32 0.32 1.60 16 15 C -0.12 -3.43 4.28 30.65 0.13 -3.30 16 16 C -0.14 -3.83 4.23 30.64 0.13 -3.70 16 17 C 0.20 5.31 0.67 3.53 0.00 5.31 16 18 C -0.12 -2.63 4.84 30.63 0.15 -2.48 16 19 C -0.12 -2.41 5.68 30.63 0.17 -2.23 16 20 C -0.12 -2.41 6.07 30.67 0.19 -2.23 16 21 C 0.11 2.63 6.02 86.35 0.52 3.15 16 22 N -0.97 -25.05 2.77 -469.92 -1.30 -26.35 16 23 S 2.61 69.49 5.34 -56.49 -0.30 69.19 16 24 C -0.69 -16.30 8.33 113.37 0.94 -15.36 16 25 O -0.97 -28.05 10.83 -127.65 -1.38 -29.43 16 26 O -1.00 -31.33 16.62 -127.65 -2.12 -33.46 16 27 C 0.06 2.13 3.58 86.28 0.31 2.44 16 28 H 0.07 2.37 4.55 -2.39 -0.01 2.36 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 3.04 5.92 -2.39 -0.01 3.02 16 32 H 0.03 1.48 6.01 -2.39 -0.01 1.46 16 33 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.02 0.94 6.57 -2.39 -0.02 0.92 16 35 H 0.07 2.44 5.84 -2.39 -0.01 2.42 16 36 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.05 1.47 1.10 -55.11 -0.06 1.40 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.12 3.44 5.63 -26.34 -0.15 3.29 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.36 6.54 -2.39 -0.02 1.34 16 43 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.09 2.01 6.89 -2.39 -0.02 1.99 16 47 H 0.07 1.63 7.48 -2.39 -0.02 1.62 16 48 H 0.17 4.57 2.11 -2.39 -0.01 4.57 16 49 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.13 2.80 7.83 -2.39 -0.02 2.78 16 51 H 0.07 2.32 5.68 -2.39 -0.01 2.30 16 52 H 0.03 0.99 7.03 -2.39 -0.02 0.98 16 Total: -1.00 -60.09 359.75 0.05 -60.04 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.74 Total: 27.17 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.44 Total: -41.04 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -3.35 Total: -96.65 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -3.50 Total: -62.88 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 69.49 SS G_CDS: -0.30 Total: 69.19 kcal Total: -60.09 0.05 -60.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.746 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds