Wall clock time and date at job start Wed Apr 1 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46895 * 109.47260 * 294.99440 * 3 2 1 14 14 C 1.46836 * 111.00517 * 299.23858 * 13 3 2 15 15 C 1.53039 * 109.51556 * 174.13391 * 14 13 3 16 16 C 1.53088 * 109.27739 * 59.14154 * 15 14 13 17 17 C 1.53077 * 109.22974 * 302.39243 * 16 15 14 18 18 C 1.46850 * 110.99959 * 174.99886 * 13 3 2 19 19 C 1.52999 * 109.46052 * 62.26484 * 16 15 14 20 20 C 1.53194 * 109.33828 * 181.33909 * 19 16 15 21 21 N 1.46930 * 108.76946 * 305.41376 * 20 19 16 22 22 S 1.65595 * 120.64229 * 233.65609 * 21 20 19 23 23 C 1.81407 * 104.44818 * 270.02095 * 22 21 20 24 24 O 1.42099 * 104.27627 * 26.09006 * 22 21 20 25 25 O 1.42101 * 104.27973 * 153.94880 * 22 21 20 26 26 C 1.46930 * 118.72127 * 53.67192 * 21 20 19 27 27 C 1.52983 * 109.48496 * 182.47220 * 16 15 14 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 32 32 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.46144 * 294.14686 * 14 13 3 35 35 H 1.08996 * 109.46777 * 54.11688 * 14 13 3 36 36 H 1.09001 * 109.50241 * 299.20080 * 15 14 13 37 37 H 1.09002 * 109.51032 * 179.07846 * 15 14 13 38 38 H 1.09001 * 109.49690 * 297.64371 * 17 16 15 39 39 H 1.08998 * 109.50029 * 177.53048 * 17 16 15 40 40 H 1.08999 * 109.46125 * 305.87158 * 18 13 3 41 41 H 1.08996 * 109.46138 * 65.83875 * 18 13 3 42 42 H 1.08996 * 109.49494 * 301.29890 * 19 16 15 43 43 H 1.09000 * 109.49033 * 61.38315 * 19 16 15 44 44 H 1.09000 * 109.58912 * 185.62937 * 20 19 16 45 45 H 1.09000 * 109.70758 * 65.26905 * 20 19 16 46 46 H 1.09000 * 109.47074 * 59.99796 * 23 22 21 47 47 H 1.08994 * 109.46957 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.46939 * 299.99651 * 23 22 21 49 49 H 1.08998 * 109.58222 * 186.55301 * 26 21 20 50 50 H 1.09006 * 109.58351 * 66.13586 * 26 21 20 51 51 H 1.08999 * 109.48837 * 298.65881 * 27 16 15 52 52 H 1.08999 * 109.49058 * 58.70737 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6516 2.0992 -1.2552 14 6 2.2351 1.4094 -2.4127 15 6 1.6938 2.0287 -3.7032 16 6 2.0508 3.5170 -3.7381 17 6 1.4736 4.2031 -2.4974 18 6 2.0209 3.5204 -1.2418 19 6 3.5725 3.6761 -3.7481 20 6 3.9267 5.1665 -3.7492 21 7 3.2442 5.8138 -4.8780 22 16 4.0971 6.7111 -5.9778 23 6 4.0783 8.3940 -5.3009 24 8 5.4098 6.1690 -5.9297 25 8 3.3192 6.6423 -7.1649 26 6 1.7902 5.6499 -5.0119 27 6 1.4589 4.1543 -4.9966 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8288 -0.0530 2.9544 34 1 3.3200 1.5122 -2.3877 35 1 1.9697 0.3528 -2.3777 36 1 0.6104 1.9135 -3.7356 37 1 2.1395 1.5274 -4.5624 38 1 0.3865 4.1238 -2.5104 39 1 1.7623 5.2541 -2.4954 40 1 1.5995 3.9968 -0.3565 41 1 3.1067 3.6133 -1.2219 42 1 3.9935 3.2028 -2.8611 43 1 3.9816 3.2043 -4.6415 44 1 5.0048 5.2858 -3.8570 45 1 3.6002 5.6226 -2.8146 46 1 4.5519 8.3961 -4.3191 47 1 4.6242 9.0603 -5.9687 48 1 3.0477 8.7366 -5.2079 49 1 1.4584 6.0881 -5.9532 50 1 1.2887 6.1438 -4.1796 51 1 1.8847 3.6784 -5.8800 52 1 0.3771 4.0210 -4.9975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:23 Heat of formation + Delta-G solvation = -71.746358 kcal Electronic energy + Delta-G solvation = -30989.866014 eV Core-core repulsion = 27116.089419 eV Total energy + Delta-G solvation = -3873.776595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.16922 -37.34797 -37.24013 -36.11058 -34.58701 -32.28462 -31.36610 -30.91116 -30.18950 -29.75008 -28.07668 -25.95138 -24.04963 -23.40471 -22.98122 -21.92250 -20.91327 -19.35124 -18.86431 -18.15848 -17.46104 -16.49513 -16.25863 -16.13330 -15.42237 -14.85900 -14.58259 -14.42869 -14.14500 -14.10761 -14.05639 -13.64985 -13.46050 -13.35230 -13.23687 -12.85465 -12.58527 -12.40457 -12.26763 -11.99511 -11.92979 -11.80591 -11.58735 -11.49184 -11.36195 -11.20851 -11.12491 -11.08702 -10.88402 -10.72637 -10.52613 -10.50674 -10.14753 -10.04024 -9.88902 -9.63606 -9.57180 -9.30782 -9.02306 -8.87260 -8.35596 -7.03516 -5.98100 -4.11952 0.03610 2.43342 3.24698 3.34076 3.36732 3.67333 3.90179 4.37272 4.39051 4.62326 4.63663 4.82044 4.88397 5.10201 5.17686 5.19523 5.26104 5.33637 5.36849 5.48008 5.55810 5.64307 5.77863 5.81283 5.88616 5.93910 6.02874 6.12334 6.15379 6.21212 6.26665 6.35253 6.41787 6.47524 6.51124 6.51860 6.61054 6.63846 6.68121 6.79830 6.83430 6.99932 7.12821 7.21727 7.37372 7.63748 7.77773 8.01729 8.18538 8.37229 8.51098 8.99319 9.55823 11.00227 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003432 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.842707 B = 8157.036677 C = 9357.943983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.532 5.532 14 C 0.060 3.940 15 C -0.105 4.105 16 C -0.052 4.052 17 C -0.107 4.107 18 C 0.063 3.937 19 C -0.124 4.124 20 C 0.117 3.883 21 N -0.996 5.996 22 S 2.610 3.390 23 C -0.675 4.675 24 O -0.955 6.955 25 O -0.958 6.958 26 C 0.118 3.882 27 C -0.118 4.118 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.088 0.912 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 13.234 -13.056 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.052 4.052 17 C -0.145 4.145 18 C -0.065 4.065 19 C -0.163 4.163 20 C -0.008 4.008 21 N -0.835 5.835 22 S 2.703 3.297 23 C -0.825 4.825 24 O -0.945 6.945 25 O -0.949 6.949 26 C -0.007 4.007 27 C -0.157 4.157 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.145 0.855 49 H 0.106 0.894 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.342 12.823 -13.699 19.060 hybrid contribution 1.825 0.504 0.873 2.085 sum -1.517 13.328 -12.825 18.559 Atomic orbital electron populations 1.21702 0.98906 0.98323 1.00546 1.21628 0.92211 0.99346 1.01889 1.19248 0.92929 0.91055 0.85955 0.94568 1.21772 0.92935 1.37991 1.05169 0.92592 1.24902 0.97615 0.95121 0.95763 1.69886 1.34624 1.38517 1.09351 0.86679 0.86454 0.77737 0.77954 1.19906 1.21116 1.21067 1.62367 1.58215 1.01031 1.04022 1.21931 0.97299 0.98124 0.89526 1.21671 1.01006 0.93803 0.97784 1.20455 0.94432 0.95949 0.94349 1.21756 1.00434 0.98015 0.94261 1.21846 0.98427 0.90384 0.95888 1.21995 0.96162 0.94923 1.03233 1.21557 0.96968 0.94121 0.88124 1.57648 1.17397 1.64671 1.43762 1.04857 0.73919 0.76776 0.74184 1.30610 1.11349 1.26384 1.14109 1.93609 1.38614 1.75895 1.86426 1.93589 1.70727 1.86425 1.44143 1.21499 0.78892 0.98155 1.02143 1.21883 1.00895 0.94461 0.98435 0.94295 0.93376 0.95730 0.94831 0.89113 0.93018 0.94378 0.91380 0.91860 0.92831 0.91881 0.92366 0.92283 0.94407 0.89467 0.91831 0.89247 0.90938 0.85386 0.85811 0.85507 0.89359 0.91188 0.91684 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.80 37.16 0.36 -2.36 16 2 C -0.11 -2.58 5.06 -26.73 -0.14 -2.71 16 3 C 0.21 5.01 1.74 -68.87 -0.12 4.89 16 4 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 5 C -0.54 -13.73 7.18 -34.44 -0.25 -13.98 16 6 H 0.06 1.43 5.84 -52.49 -0.31 1.12 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.89 -24.31 11.30 55.43 0.63 -23.68 16 9 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.53 -10.33 4.09 -228.09 -0.93 -11.26 16 14 C 0.06 1.08 4.56 -3.84 -0.02 1.06 16 15 C -0.10 -1.52 4.88 -26.67 -0.13 -1.65 16 16 C -0.05 -0.66 0.51 -154.43 -0.08 -0.74 16 17 C -0.11 -1.42 4.13 -26.67 -0.11 -1.53 16 18 C 0.06 1.10 4.87 -3.83 -0.02 1.08 16 19 C -0.12 -1.67 4.31 -26.63 -0.11 -1.78 16 20 C 0.12 1.31 5.96 -3.71 -0.02 1.29 16 21 N -1.00 -9.87 3.22 -113.51 -0.37 -10.23 16 22 S 2.61 25.26 6.09 -107.50 -0.66 24.60 16 23 C -0.68 -3.89 10.99 101.05 1.11 -2.78 16 24 O -0.96 -12.71 16.59 -57.54 -0.95 -13.67 16 25 O -0.96 -11.94 16.59 -57.54 -0.95 -12.90 16 26 C 0.12 1.09 5.97 -3.71 -0.02 1.07 16 27 C -0.12 -1.27 4.91 -26.64 -0.13 -1.40 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.76 6.05 -51.93 -0.31 0.44 16 32 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.04 0.76 4.97 -51.93 -0.26 0.50 16 35 H 0.07 1.31 5.93 -51.93 -0.31 1.00 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.67 5.02 -51.93 -0.26 0.41 16 40 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.04 0.71 5.36 -51.93 -0.28 0.43 16 42 H 0.09 1.37 4.92 -51.93 -0.26 1.11 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.00 6.86 -51.93 -0.36 0.64 16 45 H 0.07 0.75 6.66 -51.93 -0.35 0.40 16 46 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 49 H 0.09 0.75 6.86 -51.93 -0.36 0.40 16 50 H 0.07 0.55 6.77 -51.93 -0.35 0.20 16 51 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -31.04 381.91 -11.00 -42.03 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.73 Total: 1.53 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 0.23 Total: -17.83 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.67 Total: -45.18 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.91 Total: -26.56 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 25.26 SS G_CDS: -0.66 Total: 24.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.04 -11.00 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.712 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds