Wall clock time and date at job start Wed Apr 1 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46895 * 109.47260 * 294.99440 * 3 2 1 14 14 C 1.46836 * 111.00517 * 299.23858 * 13 3 2 15 15 C 1.53039 * 109.51556 * 174.13391 * 14 13 3 16 16 C 1.53088 * 109.27739 * 59.14154 * 15 14 13 17 17 C 1.53077 * 109.22974 * 302.39243 * 16 15 14 18 18 C 1.46850 * 110.99959 * 174.99886 * 13 3 2 19 19 C 1.52999 * 109.46052 * 62.26484 * 16 15 14 20 20 C 1.53194 * 109.33828 * 181.33909 * 19 16 15 21 21 N 1.46930 * 108.76946 * 305.41376 * 20 19 16 22 22 S 1.65595 * 120.64229 * 233.65609 * 21 20 19 23 23 C 1.81407 * 104.44818 * 270.02095 * 22 21 20 24 24 O 1.42099 * 104.27627 * 26.09006 * 22 21 20 25 25 O 1.42101 * 104.27973 * 153.94880 * 22 21 20 26 26 C 1.46930 * 118.72127 * 53.67192 * 21 20 19 27 27 C 1.52983 * 109.48496 * 182.47220 * 16 15 14 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 32 32 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.46144 * 294.14686 * 14 13 3 35 35 H 1.08996 * 109.46777 * 54.11688 * 14 13 3 36 36 H 1.09001 * 109.50241 * 299.20080 * 15 14 13 37 37 H 1.09002 * 109.51032 * 179.07846 * 15 14 13 38 38 H 1.09001 * 109.49690 * 297.64371 * 17 16 15 39 39 H 1.08998 * 109.50029 * 177.53048 * 17 16 15 40 40 H 1.08999 * 109.46125 * 305.87158 * 18 13 3 41 41 H 1.08996 * 109.46138 * 65.83875 * 18 13 3 42 42 H 1.08996 * 109.49494 * 301.29890 * 19 16 15 43 43 H 1.09000 * 109.49033 * 61.38315 * 19 16 15 44 44 H 1.09000 * 109.58912 * 185.62937 * 20 19 16 45 45 H 1.09000 * 109.70758 * 65.26905 * 20 19 16 46 46 H 1.09000 * 109.47074 * 59.99796 * 23 22 21 47 47 H 1.08994 * 109.46957 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.46939 * 299.99651 * 23 22 21 49 49 H 1.08998 * 109.58222 * 186.55301 * 26 21 20 50 50 H 1.09006 * 109.58351 * 66.13586 * 26 21 20 51 51 H 1.08999 * 109.48837 * 298.65881 * 27 16 15 52 52 H 1.08999 * 109.49058 * 58.70737 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6516 2.0992 -1.2552 14 6 2.2351 1.4094 -2.4127 15 6 1.6938 2.0287 -3.7032 16 6 2.0508 3.5170 -3.7381 17 6 1.4736 4.2031 -2.4974 18 6 2.0209 3.5204 -1.2418 19 6 3.5725 3.6761 -3.7481 20 6 3.9267 5.1665 -3.7492 21 7 3.2442 5.8138 -4.8780 22 16 4.0971 6.7111 -5.9778 23 6 4.0783 8.3940 -5.3009 24 8 5.4098 6.1690 -5.9297 25 8 3.3192 6.6423 -7.1649 26 6 1.7902 5.6499 -5.0119 27 6 1.4589 4.1543 -4.9966 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8288 -0.0530 2.9544 34 1 3.3200 1.5122 -2.3877 35 1 1.9697 0.3528 -2.3777 36 1 0.6104 1.9135 -3.7356 37 1 2.1395 1.5274 -4.5624 38 1 0.3865 4.1238 -2.5104 39 1 1.7623 5.2541 -2.4954 40 1 1.5995 3.9968 -0.3565 41 1 3.1067 3.6133 -1.2219 42 1 3.9935 3.2028 -2.8611 43 1 3.9816 3.2043 -4.6415 44 1 5.0048 5.2858 -3.8570 45 1 3.6002 5.6226 -2.8146 46 1 4.5519 8.3961 -4.3191 47 1 4.6242 9.0603 -5.9687 48 1 3.0477 8.7366 -5.2079 49 1 1.4584 6.0881 -5.9532 50 1 1.2887 6.1438 -4.1796 51 1 1.8847 3.6784 -5.8800 52 1 0.3771 4.0210 -4.9975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:21 Heat of formation + Delta-G solvation = -92.941388 kcal Electronic energy + Delta-G solvation = -30990.785099 eV Core-core repulsion = 27116.089419 eV Total energy + Delta-G solvation = -3874.695680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.31653 -38.61960 -38.19289 -36.97186 -35.94849 -33.99951 -32.85924 -31.94045 -31.51745 -30.27323 -29.46527 -27.61188 -25.34944 -24.62078 -24.30879 -23.25783 -22.18836 -20.80733 -20.04464 -19.07342 -18.64474 -17.87050 -17.26011 -17.10315 -17.00753 -16.18904 -15.83942 -15.52070 -15.36416 -15.23149 -15.13996 -14.89505 -14.77632 -14.38890 -14.04631 -13.92685 -13.75288 -13.51028 -13.37980 -13.21631 -13.14281 -13.13421 -12.91993 -12.77976 -12.76847 -12.73045 -12.42597 -12.29272 -12.21421 -12.03536 -11.96018 -11.81827 -11.61840 -11.56273 -11.33720 -11.13948 -10.91624 -10.87294 -10.65679 -10.38619 -9.74842 -8.76294 -7.97866 -6.21404 -0.66301 1.34795 1.39282 1.47525 1.69992 2.41033 3.00570 3.18568 3.20451 3.52341 3.67975 3.83997 3.90627 4.03576 4.16402 4.18798 4.31779 4.44595 4.50433 4.52195 4.58461 4.61338 4.71813 4.77152 4.79301 4.82055 4.84320 4.94602 4.94821 4.97630 4.99257 5.05440 5.11476 5.16205 5.18938 5.29915 5.33732 5.40662 5.42981 5.47662 5.48054 5.54241 5.58859 5.65842 5.69944 5.77651 5.85410 6.12782 6.28830 6.48248 6.83155 7.03002 7.49611 8.94795 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003432 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.842707 B = 8157.036677 C = 9357.943983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.939 3.061 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.527 5.527 14 C 0.065 3.935 15 C -0.097 4.097 16 C -0.047 4.047 17 C -0.094 4.094 18 C 0.062 3.938 19 C -0.125 4.125 20 C 0.121 3.879 21 N -0.997 5.997 22 S 2.611 3.389 23 C -0.649 4.649 24 O -1.001 7.001 25 O -0.991 6.991 26 C 0.115 3.885 27 C -0.115 4.115 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.259 0.741 34 H 0.015 0.985 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.151 0.849 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.055 0.945 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 15.759 -14.364 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.251 5.251 14 C -0.064 4.064 15 C -0.135 4.135 16 C -0.048 4.048 17 C -0.131 4.131 18 C -0.067 4.067 19 C -0.164 4.164 20 C -0.004 4.004 21 N -0.835 5.835 22 S 2.710 3.290 23 C -0.803 4.803 24 O -0.992 6.992 25 O -0.982 6.982 26 C -0.010 4.010 27 C -0.154 4.154 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.162 0.838 47 H 0.160 0.840 48 H 0.170 0.830 49 H 0.118 0.882 50 H 0.112 0.888 51 H 0.074 0.926 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.321 15.313 -15.041 21.895 hybrid contribution 2.144 -0.248 1.280 2.510 sum -2.177 15.065 -13.761 20.520 Atomic orbital electron populations 1.21551 0.96292 0.99610 1.00700 1.21472 0.94513 0.98547 1.00098 1.18998 0.91539 0.91283 0.86819 0.98026 1.22011 0.94238 1.37148 1.04710 0.93248 1.25549 1.01180 0.95207 0.95767 1.70009 1.35938 1.39407 1.09771 0.85808 0.82234 0.77542 0.77840 1.19697 1.20757 1.21041 1.62335 1.57919 1.02064 1.02737 1.21891 0.96018 0.97612 0.90849 1.21610 1.01255 0.95040 0.95597 1.20414 0.93985 0.94828 0.95527 1.21677 1.00630 0.98941 0.91850 1.21916 0.97548 0.89296 0.97897 1.21935 0.96623 0.96575 1.01258 1.21437 0.97111 0.92608 0.89222 1.57522 1.17652 1.65420 1.42949 1.04574 0.72478 0.78314 0.73684 1.30358 1.13646 1.21526 1.14772 1.93552 1.40677 1.77988 1.86955 1.93544 1.71004 1.87569 1.46070 1.21659 0.78447 0.97059 1.03815 1.21851 1.01674 0.95501 0.96355 0.94915 0.92278 0.93884 0.95082 0.92312 0.93131 0.96702 0.92892 0.90998 0.92082 0.91002 0.89641 0.93403 0.96176 0.92441 0.92873 0.89631 0.89529 0.83818 0.84023 0.83023 0.88224 0.88808 0.92603 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.80 71.98 0.71 -4.19 16 2 C -0.11 -5.08 5.06 30.59 0.15 -4.93 16 3 C 0.22 10.70 1.74 44.17 0.08 10.78 16 4 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 5 C -0.54 -28.56 7.18 25.60 0.18 -28.38 16 6 H 0.05 2.63 5.84 -2.91 -0.02 2.61 16 7 C 0.02 1.22 5.30 84.66 0.45 1.67 16 8 N -0.91 -51.65 11.30 21.45 0.24 -51.40 16 9 Si 0.94 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 N -0.53 -20.73 4.09 -875.55 -3.58 -24.31 16 14 C 0.06 2.38 4.56 86.33 0.39 2.78 16 15 C -0.10 -2.72 4.88 30.64 0.15 -2.57 16 16 C -0.05 -1.13 0.51 -52.13 -0.03 -1.16 16 17 C -0.09 -2.28 4.13 30.63 0.13 -2.15 16 18 C 0.06 2.15 4.87 86.33 0.42 2.57 16 19 C -0.12 -3.33 4.31 30.66 0.13 -3.20 16 20 C 0.12 2.56 5.96 86.36 0.51 3.07 16 21 N -1.00 -17.39 3.22 -513.05 -1.65 -19.04 16 22 S 2.61 45.53 6.09 -56.49 -0.34 45.18 16 23 C -0.65 -4.68 10.99 113.37 1.25 -3.43 16 24 O -1.00 -26.18 16.59 -127.65 -2.12 -28.30 16 25 O -0.99 -23.10 16.59 -127.65 -2.12 -25.22 16 26 C 0.11 1.72 5.97 86.36 0.52 2.23 16 27 C -0.11 -2.16 4.91 30.65 0.15 -2.01 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.44 6.05 -2.39 -0.01 1.43 16 32 H 0.06 3.16 5.96 -2.39 -0.01 3.15 16 33 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 34 H 0.01 0.62 4.97 -2.38 -0.01 0.60 16 35 H 0.05 2.08 5.93 -2.39 -0.01 2.07 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.65 5.02 -2.39 -0.01 1.64 16 40 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 41 H 0.02 0.77 5.36 -2.39 -0.01 0.76 16 42 H 0.06 1.87 4.92 -2.39 -0.01 1.86 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.87 6.86 -2.39 -0.02 1.86 16 45 H 0.09 1.58 6.66 -2.39 -0.02 1.56 16 46 H 0.14 0.74 8.14 -2.39 -0.02 0.73 16 47 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.10 1.34 6.86 -2.39 -0.02 1.32 16 50 H 0.09 1.00 6.77 -2.38 -0.02 0.98 16 51 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.34 381.91 -1.45 -71.79 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.91 Total: 14.79 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 5.19 Total: -28.92 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -4.99 Total: -94.75 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -4.24 Total: -53.52 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 45.53 SS G_CDS: -0.34 Total: 45.18 kcal Total: -70.34 -1.45 -71.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.156 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds