Wall clock time and date at job start Wed Apr 1 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 H 1.09004 * 109.47501 * 54.99263 * 3 2 1 5 5 C 1.52996 * 109.47123 * 174.99737 * 3 2 1 6 6 N 1.46903 * 109.47418 * 186.15022 * 5 3 2 7 7 C 1.46848 * 110.99735 * 52.74510 * 6 5 3 8 8 C 1.53042 * 109.52252 * 185.84336 * 7 6 5 9 9 C 1.53115 * 109.27781 * 300.81824 * 8 7 6 10 10 C 1.53129 * 109.15856 * 57.65522 * 9 8 7 11 11 C 1.46842 * 111.00228 * 176.95580 * 6 5 3 12 12 H 1.08995 * 109.45306 * 294.17184 * 11 6 5 13 13 C 1.52998 * 109.46156 * 54.14901 * 11 6 5 14 14 N 1.46494 * 109.47286 * 54.80566 * 13 11 6 15 15 C 1.34783 * 119.99891 * 174.95596 * 14 13 11 16 16 O 1.21283 * 119.99879 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99869 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.46954 * 180.02562 * 17 15 14 19 19 C 1.76208 * 100.00237 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99486 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00193 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99717 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46875 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47478 * 300.00174 * 23 21 19 26 26 H 1.48500 * 109.47255 * 60.00218 * 23 21 19 27 27 O 1.42904 * 109.47328 * 294.99694 * 3 2 1 28 28 C 1.42892 * 114.00233 * 149.99777 * 27 3 2 29 29 H 1.08995 * 109.47302 * 300.00439 * 1 2 3 30 30 H 1.09005 * 109.46795 * 60.00174 * 1 2 3 31 31 H 1.08998 * 109.46703 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47302 * 239.99561 * 2 1 3 33 33 H 1.09003 * 109.46889 * 119.99290 * 2 1 3 34 34 H 1.09003 * 109.47238 * 66.15288 * 5 3 2 35 35 H 1.08998 * 109.47485 * 306.15152 * 5 3 2 36 36 H 1.08993 * 109.46540 * 65.82697 * 7 6 5 37 37 H 1.08997 * 109.45606 * 305.85019 * 7 6 5 38 38 H 1.09008 * 109.50117 * 180.88173 * 8 7 6 39 39 H 1.08993 * 109.53946 * 60.78217 * 8 7 6 40 40 H 1.09000 * 109.52588 * 297.75424 * 9 8 7 41 41 H 1.08999 * 109.52407 * 177.55948 * 9 8 7 42 42 H 1.09001 * 109.49761 * 182.40335 * 10 9 8 43 43 H 1.09002 * 109.50149 * 62.28581 * 10 9 8 44 44 H 1.08999 * 109.46985 * 294.80151 * 13 11 6 45 45 H 1.09005 * 109.46969 * 174.81061 * 13 11 6 46 46 H 0.96998 * 120.00526 * 354.95770 * 14 13 11 47 47 H 1.08998 * 109.47113 * 60.00254 * 17 15 14 48 48 H 1.08999 * 109.47776 * 300.00066 * 17 15 14 49 49 H 0.96998 * 120.00354 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.47438 * 179.97438 * 28 27 3 51 51 H 1.09000 * 109.47844 * 300.00343 * 28 27 3 52 52 H 1.08999 * 109.47213 * 60.00386 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4444 0.1258 6 7 4.0423 2.8257 0.2738 7 6 3.3421 3.5100 1.3683 8 6 3.7576 4.9826 1.3995 9 6 5.2726 5.0763 1.6006 10 6 5.9770 4.3147 0.4742 11 6 5.4971 2.8615 0.4698 12 1 5.7467 2.3937 1.4221 13 6 6.1835 2.1015 -0.6670 14 7 5.7499 2.6516 -1.9537 15 6 6.3032 2.2045 -3.0985 16 8 7.1604 1.3472 -3.0633 17 6 5.8569 2.7699 -4.4221 18 16 6.7784 1.9724 -5.7604 19 6 6.0772 2.7990 -7.1497 20 1 5.3135 3.5484 -7.0031 21 6 6.5072 2.4877 -8.4321 22 7 7.4384 1.5747 -8.6106 23 14 5.7643 3.3645 -9.9047 24 1 6.3894 2.8545 -11.1515 25 1 4.3016 3.1115 -9.9455 26 1 6.0111 4.8242 -9.7880 27 8 1.6620 2.0814 -1.2211 28 6 1.4559 3.4902 -1.1004 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 4.0037 1.0022 -0.7686 35 1 3.8580 0.8630 0.9999 36 1 3.6019 3.0392 2.3163 37 1 2.2658 3.4397 1.2108 38 1 3.2496 5.4867 2.2218 39 1 3.4854 5.4583 0.4574 40 1 5.5405 4.6360 2.5610 41 1 5.5788 6.1221 1.5801 42 1 7.0547 4.3416 0.6354 43 1 5.7398 4.7792 -0.4829 44 1 5.9141 1.0467 -0.6134 45 1 7.2644 2.2056 -0.5730 46 1 5.0647 3.3375 -1.9818 47 1 6.0447 3.8434 -4.4405 48 1 4.7909 2.5853 -4.5553 49 1 7.7392 1.3574 -9.5068 50 1 1.1724 3.9004 -2.0697 51 1 0.6618 3.6808 -0.3785 52 1 2.3768 3.9644 -0.7610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265638666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:36 Heat of formation + Delta-G solvation = -88.884270 kcal Electronic energy + Delta-G solvation = -29628.192232 eV Core-core repulsion = 25753.672481 eV Total energy + Delta-G solvation = -3874.519750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.46756 -38.84105 -37.93058 -34.64816 -34.23926 -33.21454 -32.36263 -31.53012 -29.18627 -28.73658 -26.45469 -26.05708 -25.35526 -24.84737 -22.79208 -21.57583 -20.88399 -20.55035 -19.57683 -17.78453 -17.02635 -16.58399 -16.30034 -16.07907 -15.46547 -15.34648 -14.76946 -14.72713 -14.72529 -14.52827 -14.20289 -14.10199 -13.86137 -13.69455 -13.46146 -13.26594 -13.00856 -12.81232 -12.58941 -12.47734 -12.28569 -12.14717 -11.67614 -11.60913 -11.46677 -11.42430 -11.28382 -11.03631 -10.98643 -10.97341 -10.94341 -10.71112 -10.54630 -10.40720 -9.75019 -9.62540 -9.27038 -8.99671 -8.68761 -8.57640 -8.14967 -6.41470 -6.14966 -3.84488 3.13734 3.25199 3.28308 3.31897 3.35082 3.47232 3.68591 3.92676 4.27392 4.33136 4.39214 4.52366 4.57351 4.74167 4.79464 4.84535 4.93750 5.00311 5.04292 5.16053 5.19951 5.21524 5.23387 5.27666 5.32192 5.35937 5.37636 5.44596 5.54183 5.57522 5.63277 5.65489 5.67880 5.69988 5.75292 5.77386 5.82389 5.89183 5.92288 5.94482 6.02866 6.06765 6.07223 6.27464 6.66823 6.74534 6.87539 7.15856 7.66032 7.94794 8.41964 8.78868 9.30245 10.92470 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.002853 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.112616 B = 9811.241313 C =10840.358841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.090 3.910 4 H 0.060 0.940 5 C 0.027 3.973 6 N -0.528 5.528 7 C 0.043 3.957 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.113 4.113 11 C 0.076 3.924 12 H 0.054 0.946 13 C 0.128 3.872 14 N -0.723 5.723 15 C 0.531 3.469 16 O -0.525 6.525 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.274 1.274 27 O -0.369 6.369 28 C 0.023 3.977 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.405 0.595 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.268 0.732 50 H 0.079 0.921 51 H 0.028 0.972 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 5.204 25.911 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.101 4.101 6 N -0.253 5.253 7 C -0.084 4.084 8 C -0.155 4.155 9 C -0.158 4.158 10 C -0.151 4.151 11 C -0.033 4.033 12 H 0.072 0.928 13 C 0.003 3.997 14 N -0.379 5.379 15 C 0.317 3.683 16 O -0.400 6.400 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.209 1.209 25 H -0.199 1.199 26 H -0.200 1.200 27 O -0.287 6.287 28 C -0.074 4.074 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.240 0.760 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.078 0.922 50 H 0.097 0.903 51 H 0.046 0.954 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.911 3.817 25.247 27.767 hybrid contribution -1.584 1.591 0.056 2.246 sum -12.495 5.408 25.303 28.733 Atomic orbital electron populations 1.21695 0.95187 1.01649 1.02016 1.21603 0.96731 0.94850 1.02943 1.22240 0.92634 0.94069 0.87864 0.92232 1.22860 0.96134 0.89001 1.02097 1.61945 1.03990 1.15954 1.43404 1.22312 0.99122 0.94815 0.92160 1.21612 0.96134 0.95452 1.02344 1.21577 0.95224 1.00529 0.98459 1.21644 0.99781 0.93821 0.99813 1.21933 0.87435 0.96825 0.97088 0.92840 1.21287 0.98797 0.97097 0.82507 1.45831 1.43361 1.43921 1.04766 1.20280 0.81183 0.81829 0.85013 1.90689 1.31168 1.31063 1.87125 1.23494 1.05338 1.04279 0.97005 1.85351 1.51221 1.52713 0.94216 1.22842 1.26534 1.26368 0.92480 0.91025 1.24976 0.94942 0.95213 0.98431 1.70012 1.27563 1.30023 1.22831 0.86243 0.79260 0.79593 0.80515 1.20870 1.19939 1.19974 1.87946 1.89001 1.20593 1.31191 1.23007 1.00359 0.82195 1.01795 0.93337 0.91810 0.92666 0.90594 0.91014 0.88675 0.94186 0.94912 0.90312 0.91656 0.90892 0.92375 0.91626 0.91129 0.90608 0.92033 0.91021 0.75955 0.89505 0.89238 0.92214 0.90282 0.95391 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.16 0.36 -0.80 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.09 0.80 2.14 -26.73 -0.06 0.75 16 4 H 0.06 0.46 5.58 -51.93 -0.29 0.17 16 5 C 0.03 0.25 4.13 -3.82 -0.02 0.23 16 6 N -0.53 -4.37 2.63 -226.70 -0.60 -4.96 16 7 C 0.04 0.29 3.94 -3.83 -0.02 0.28 16 8 C -0.12 -0.72 6.03 -26.65 -0.16 -0.88 16 9 C -0.12 -0.78 6.00 -26.61 -0.16 -0.94 16 10 C -0.11 -0.90 5.26 -26.64 -0.14 -1.04 16 11 C 0.08 0.65 2.11 -67.73 -0.14 0.51 16 12 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 13 C 0.13 1.52 4.57 -4.05 -0.02 1.50 16 14 N -0.72 -10.12 4.98 -60.30 -0.30 -10.42 16 15 C 0.53 10.26 7.85 -10.99 -0.09 10.17 16 16 O -0.53 -12.24 15.86 5.55 0.09 -12.15 16 17 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 19 C -0.53 -15.56 9.50 30.94 0.29 -15.26 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 23 Si 0.92 21.80 29.55 -169.99 -5.02 16.77 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 O -0.37 -4.14 9.88 -35.23 -0.35 -4.49 16 28 C 0.02 0.21 9.67 101.05 0.98 1.18 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.12 6.44 -51.93 -0.33 0.79 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.52 4.37 -51.93 -0.23 0.29 16 38 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 39 H 0.07 0.49 7.59 -51.93 -0.39 0.10 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.69 7.30 -51.93 -0.38 0.31 16 44 H 0.06 0.78 6.71 -51.93 -0.35 0.44 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.40 5.03 7.42 -40.82 -0.30 4.73 16 47 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 48 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 49 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.03 0.21 7.99 -51.93 -0.42 -0.21 16 52 H 0.07 0.59 4.62 -51.93 -0.24 0.35 16 LS Contribution 410.39 15.07 6.18 6.18 Total: -1.00 -34.09 410.39 -9.88 -43.98 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -9.22 Total: 1.34 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 0.81 Total: -6.40 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.16 Total: -41.30 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.26 Total: -16.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.09 -9.88 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265638666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.909 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds