Wall clock time and date at job start Wed Apr 1 2020 03:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 H 1.09004 * 109.47501 * 54.99263 * 3 2 1 5 5 C 1.52996 * 109.47123 * 174.99737 * 3 2 1 6 6 N 1.46903 * 109.47418 * 186.15022 * 5 3 2 7 7 C 1.46848 * 110.99735 * 52.74510 * 6 5 3 8 8 C 1.53042 * 109.52252 * 185.84336 * 7 6 5 9 9 C 1.53115 * 109.27781 * 300.81824 * 8 7 6 10 10 C 1.53129 * 109.15856 * 57.65522 * 9 8 7 11 11 C 1.46842 * 111.00228 * 176.95580 * 6 5 3 12 12 H 1.08995 * 109.45306 * 294.17184 * 11 6 5 13 13 C 1.52998 * 109.46156 * 54.14901 * 11 6 5 14 14 N 1.46494 * 109.47286 * 54.80566 * 13 11 6 15 15 C 1.34783 * 119.99891 * 174.95596 * 14 13 11 16 16 O 1.21283 * 119.99879 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99869 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.46954 * 180.02562 * 17 15 14 19 19 C 1.76208 * 100.00237 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99486 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00193 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99717 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46875 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47478 * 300.00174 * 23 21 19 26 26 H 1.48500 * 109.47255 * 60.00218 * 23 21 19 27 27 O 1.42904 * 109.47328 * 294.99694 * 3 2 1 28 28 C 1.42892 * 114.00233 * 149.99777 * 27 3 2 29 29 H 1.08995 * 109.47302 * 300.00439 * 1 2 3 30 30 H 1.09005 * 109.46795 * 60.00174 * 1 2 3 31 31 H 1.08998 * 109.46703 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47302 * 239.99561 * 2 1 3 33 33 H 1.09003 * 109.46889 * 119.99290 * 2 1 3 34 34 H 1.09003 * 109.47238 * 66.15288 * 5 3 2 35 35 H 1.08998 * 109.47485 * 306.15152 * 5 3 2 36 36 H 1.08993 * 109.46540 * 65.82697 * 7 6 5 37 37 H 1.08997 * 109.45606 * 305.85019 * 7 6 5 38 38 H 1.09008 * 109.50117 * 180.88173 * 8 7 6 39 39 H 1.08993 * 109.53946 * 60.78217 * 8 7 6 40 40 H 1.09000 * 109.52588 * 297.75424 * 9 8 7 41 41 H 1.08999 * 109.52407 * 177.55948 * 9 8 7 42 42 H 1.09001 * 109.49761 * 182.40335 * 10 9 8 43 43 H 1.09002 * 109.50149 * 62.28581 * 10 9 8 44 44 H 1.08999 * 109.46985 * 294.80151 * 13 11 6 45 45 H 1.09005 * 109.46969 * 174.81061 * 13 11 6 46 46 H 0.96998 * 120.00526 * 354.95770 * 14 13 11 47 47 H 1.08998 * 109.47113 * 60.00254 * 17 15 14 48 48 H 1.08999 * 109.47776 * 300.00066 * 17 15 14 49 49 H 0.96998 * 120.00354 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.47438 * 179.97438 * 28 27 3 51 51 H 1.09000 * 109.47844 * 300.00343 * 28 27 3 52 52 H 1.08999 * 109.47213 * 60.00386 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4444 0.1258 6 7 4.0423 2.8257 0.2738 7 6 3.3421 3.5100 1.3683 8 6 3.7576 4.9826 1.3995 9 6 5.2726 5.0763 1.6006 10 6 5.9770 4.3147 0.4742 11 6 5.4971 2.8615 0.4698 12 1 5.7467 2.3937 1.4221 13 6 6.1835 2.1015 -0.6670 14 7 5.7499 2.6516 -1.9537 15 6 6.3032 2.2045 -3.0985 16 8 7.1604 1.3472 -3.0633 17 6 5.8569 2.7699 -4.4221 18 16 6.7784 1.9724 -5.7604 19 6 6.0772 2.7990 -7.1497 20 1 5.3135 3.5484 -7.0031 21 6 6.5072 2.4877 -8.4321 22 7 7.4384 1.5747 -8.6106 23 14 5.7643 3.3645 -9.9047 24 1 6.3894 2.8545 -11.1515 25 1 4.3016 3.1115 -9.9455 26 1 6.0111 4.8242 -9.7880 27 8 1.6620 2.0814 -1.2211 28 6 1.4559 3.4902 -1.1004 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 4.0037 1.0022 -0.7686 35 1 3.8580 0.8630 0.9999 36 1 3.6019 3.0392 2.3163 37 1 2.2658 3.4397 1.2108 38 1 3.2496 5.4867 2.2218 39 1 3.4854 5.4583 0.4574 40 1 5.5405 4.6360 2.5610 41 1 5.5788 6.1221 1.5801 42 1 7.0547 4.3416 0.6354 43 1 5.7398 4.7792 -0.4829 44 1 5.9141 1.0467 -0.6134 45 1 7.2644 2.2056 -0.5730 46 1 5.0647 3.3375 -1.9818 47 1 6.0447 3.8434 -4.4405 48 1 4.7909 2.5853 -4.5553 49 1 7.7392 1.3574 -9.5068 50 1 1.1724 3.9004 -2.0697 51 1 0.6618 3.6808 -0.3785 52 1 2.3768 3.9644 -0.7610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265638666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:35 Heat of formation + Delta-G solvation = -111.397126 kcal Electronic energy + Delta-G solvation = -29629.168463 eV Core-core repulsion = 25753.672481 eV Total energy + Delta-G solvation = -3875.495981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29687 -40.18907 -38.73347 -35.75914 -34.98265 -34.57339 -33.86378 -32.58981 -30.58182 -29.45417 -27.72421 -27.16808 -26.87688 -25.48449 -23.45941 -22.29729 -21.88351 -21.57086 -20.39265 -19.82429 -17.84681 -17.73956 -17.49454 -16.90238 -16.86920 -16.59536 -16.42407 -15.94895 -15.64535 -15.40205 -15.17651 -14.91531 -14.79496 -14.64372 -14.53882 -14.35480 -14.05668 -14.01555 -13.66538 -13.47651 -13.15708 -13.09052 -12.93466 -12.88695 -12.85178 -12.61741 -12.23909 -12.15979 -12.09029 -11.92921 -11.73263 -11.59145 -11.57001 -11.20836 -11.11851 -11.05557 -10.91321 -10.34824 -10.26870 -10.00481 -9.24512 -8.64906 -8.33261 -6.11193 1.28363 1.44518 1.47582 1.58192 1.67396 2.28062 2.35714 2.79268 3.00165 3.00507 3.35294 3.59846 3.76524 3.85884 3.96505 4.07217 4.07576 4.14867 4.23850 4.28819 4.31180 4.39298 4.40435 4.51156 4.52685 4.54909 4.57467 4.66446 4.68282 4.72760 4.77828 4.79375 4.89361 4.95230 4.99689 5.06811 5.08771 5.11562 5.14006 5.23234 5.28475 5.32804 5.42046 5.42433 5.49413 5.51480 6.05654 6.11778 6.20840 6.46754 6.60188 7.07644 7.31520 8.75856 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.002853 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.112616 B = 9811.241313 C =10840.358841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.092 3.908 4 H 0.078 0.922 5 C 0.031 3.969 6 N -0.533 5.533 7 C 0.045 3.955 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.112 4.112 11 C 0.087 3.913 12 H 0.068 0.932 13 C 0.127 3.873 14 N -0.695 5.695 15 C 0.533 3.467 16 O -0.571 6.571 17 C -0.126 4.126 18 S -0.148 6.148 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.278 1.278 25 H -0.263 1.263 26 H -0.261 1.261 27 O -0.397 6.397 28 C 0.021 3.979 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.416 0.584 47 H 0.106 0.894 48 H 0.101 0.899 49 H 0.271 0.729 50 H 0.073 0.927 51 H 0.044 0.956 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 7.214 27.669 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.097 4.097 6 N -0.258 5.258 7 C -0.082 4.082 8 C -0.152 4.152 9 C -0.153 4.153 10 C -0.150 4.150 11 C -0.022 4.022 12 H 0.085 0.915 13 C 0.003 3.997 14 N -0.349 5.349 15 C 0.318 3.682 16 O -0.450 6.450 17 C -0.277 4.277 18 S 0.079 5.921 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.203 1.203 25 H -0.187 1.187 26 H -0.186 1.186 27 O -0.316 6.316 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.253 0.747 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.063 0.937 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.859 5.860 27.055 30.523 hybrid contribution -1.017 0.963 -0.351 1.444 sum -13.875 6.823 26.704 30.858 Atomic orbital electron populations 1.21661 0.94667 1.02001 1.01866 1.21637 0.97195 0.94731 1.02692 1.22314 0.92340 0.94236 0.87704 0.90430 1.22740 0.96287 0.89524 1.01116 1.61923 1.03691 1.15568 1.44646 1.22357 0.99134 0.95014 0.91670 1.21607 0.95912 0.94961 1.02753 1.21544 0.95280 1.00585 0.97897 1.21634 1.00014 0.93237 1.00088 1.21826 0.87563 0.96956 0.95835 0.91471 1.21441 0.98854 0.97227 0.82208 1.45574 1.42169 1.42921 1.04219 1.20008 0.81002 0.81468 0.85696 1.90675 1.33426 1.33220 1.87660 1.23321 1.04608 1.04512 0.95299 1.85507 1.53793 1.54995 0.97799 1.23178 1.26833 1.26609 0.92961 0.90107 1.26121 0.95174 0.95861 1.01901 1.70177 1.29138 1.31725 1.23748 0.85014 0.78589 0.78583 0.75870 1.20266 1.18746 1.18556 1.87919 1.89211 1.21777 1.32688 1.23073 1.01105 0.81225 1.02057 0.91894 0.93449 0.92126 0.92815 0.89304 0.91758 0.93070 0.94195 0.89809 0.90046 0.91416 0.91678 0.91081 0.91196 0.91701 0.92860 0.91706 0.74656 0.87581 0.88041 0.91983 0.90845 0.93744 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.81 71.98 0.71 -1.40 16 2 C -0.12 -1.99 5.64 30.59 0.17 -1.82 16 3 C 0.09 1.50 2.14 30.59 0.07 1.57 16 4 H 0.08 0.99 5.58 -2.38 -0.01 0.97 16 5 C 0.03 0.54 4.13 86.30 0.36 0.89 16 6 N -0.53 -7.77 2.63 -871.13 -2.29 -10.07 16 7 C 0.05 0.47 3.94 86.33 0.34 0.81 16 8 C -0.11 -1.04 6.03 30.65 0.18 -0.86 16 9 C -0.12 -1.16 6.00 30.68 0.18 -0.98 16 10 C -0.11 -1.56 5.26 30.65 0.16 -1.40 16 11 C 0.09 1.35 2.11 44.94 0.09 1.44 16 12 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 13 C 0.13 2.96 4.57 86.38 0.39 3.36 16 14 N -0.69 -19.18 4.98 -463.07 -2.31 -21.49 16 15 C 0.53 20.87 7.85 87.65 0.69 21.55 16 16 O -0.57 -27.53 15.86 -3.04 -0.05 -27.57 16 17 C -0.13 -5.34 6.16 71.23 0.44 -4.90 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -32.25 9.50 67.95 0.65 -31.61 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.82 5.49 84.86 0.47 1.29 16 22 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 23 Si 1.00 44.53 29.55 68.60 2.03 46.56 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 27 O -0.40 -8.57 9.88 -148.98 -1.47 -10.04 16 28 C 0.02 0.35 9.67 113.37 1.10 1.45 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.84 7.82 -2.38 -0.02 0.82 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.52 6.44 -2.39 -0.02 1.50 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 0.82 4.37 -2.39 -0.01 0.81 16 38 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.07 0.71 7.59 -2.39 -0.02 0.70 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.05 7.30 -2.39 -0.02 1.04 16 44 H 0.05 1.37 6.71 -2.39 -0.02 1.35 16 45 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.42 9.86 7.42 -92.71 -0.69 9.17 16 47 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 48 H 0.10 4.04 8.14 -2.40 -0.02 4.02 16 49 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.04 0.56 7.99 -2.39 -0.02 0.55 16 52 H 0.07 1.10 4.62 -2.39 -0.01 1.09 16 Total: -1.00 -76.32 410.39 1.23 -75.08 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.21 Total: 24.62 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 5.99 Total: -10.60 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -4.31 Total: -88.37 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.52 Total: -37.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -76.32 1.23 -75.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265638666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.316 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds