Wall clock time and date at job start Wed Apr 1 2020 04:09:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.46793 * 2 1
4 4 N 1.46503 * 109.47172 * 183.50553 * 3 2 1
5 5 C 1.34775 * 119.99996 * 264.70311 * 4 3 2
6 6 O 1.21282 * 119.99764 * 184.60709 * 5 4 3
7 7 C 1.50700 * 120.00234 * 4.60502 * 5 4 3
8 8 H 1.08997 * 110.66383 * 316.16464 * 7 5 4
9 9 C 1.54710 * 110.74579 * 79.57991 * 7 5 4
10 10 C 1.51638 * 101.92959 * 93.04960 * 9 7 5
11 11 C 1.37747 * 132.17494 * 195.85721 * 10 9 7
12 12 C 1.38344 * 119.97959 * 179.02513 * 11 10 9
13 13 C 1.38292 * 119.76861 * 359.97438 * 12 11 10
14 14 C 1.37934 * 120.34855 * 0.22386 * 13 12 11
15 15 C 1.38889 * 107.04211 * 15.34936 * 10 9 7
16 16 O 1.36130 * 111.23095 * 1.11924 * 15 10 9
17 17 C 1.46502 * 119.99816 * 84.69554 * 4 3 2
18 18 H 1.09001 * 110.88464 * 9.44298 * 17 4 3
19 19 C 1.55160 * 111.00215 * 245.56519 * 17 4 3
20 20 C 1.54322 * 102.94395 * 277.38840 * 19 17 4
21 21 N 1.47026 * 107.26931 * 337.81005 * 20 19 17
22 22 C 1.36937 * 125.64699 * 178.98307 * 21 20 19
23 23 H 1.07996 * 119.99923 * 179.97438 * 22 21 20
24 24 C 1.38817 * 119.99873 * 359.97438 * 22 21 20
25 25 N 1.31620 * 120.00047 * 359.97438 * 24 22 21
26 26 Si 1.86801 * 119.99851 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47270 * 90.00097 * 26 24 22
28 28 H 1.48502 * 109.46906 * 209.99870 * 26 24 22
29 29 H 1.48499 * 109.46946 * 329.99851 * 26 24 22
30 30 C 1.47426 * 108.70426 * 358.94114 * 21 20 19
31 31 H 1.09002 * 109.47227 * 180.02562 * 1 2 3
32 32 H 1.08995 * 109.47487 * 299.99921 * 1 2 3
33 33 H 1.08998 * 109.47170 * 60.00144 * 1 2 3
34 34 H 1.08996 * 109.46875 * 239.99632 * 2 1 3
35 35 H 1.09003 * 109.46546 * 119.99537 * 2 1 3
36 36 H 1.09000 * 109.47144 * 63.50797 * 3 2 1
37 37 H 1.09003 * 109.47265 * 303.50644 * 3 2 1
38 38 H 1.09003 * 110.93248 * 211.20150 * 9 7 5
39 39 H 1.08997 * 110.94354 * 334.88574 * 9 7 5
40 40 H 1.08002 * 120.00676 * 359.03748 * 11 10 9
41 41 H 1.08001 * 120.11700 * 179.97438 * 12 11 10
42 42 H 1.08000 * 119.82515 * 180.20823 * 13 12 11
43 43 H 1.08004 * 119.87749 * 180.02562 * 14 13 12
44 44 H 1.08991 * 110.72351 * 35.75612 * 19 17 4
45 45 H 1.09003 * 110.71523 * 159.02420 * 19 17 4
46 46 H 1.08995 * 109.87902 * 97.22753 * 20 19 17
47 47 H 1.08994 * 109.88296 * 218.23916 * 20 19 17
48 48 H 0.96998 * 119.99697 * 180.02562 * 25 24 22
49 49 H 1.09002 * 110.36349 * 265.29003 * 30 21 20
50 50 H 1.08997 * 110.36340 * 142.96816 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5025 1.4434 -0.0845
5 6 4.2424 1.5279 1.0389
6 8 5.4499 1.6130 0.9648
7 6 3.5692 1.5168 2.3872
8 1 2.6905 2.1617 2.3837
9 6 3.1933 0.0739 2.8001
10 6 4.4054 -0.3466 3.6084
11 6 4.8556 -1.5793 4.0270
12 6 6.0299 -1.6768 4.7518
13 6 6.7479 -0.5338 5.0529
14 6 6.2968 0.7020 4.6383
15 6 5.1130 0.8093 3.9123
16 8 4.4885 1.9136 3.4188
17 6 4.1609 1.3524 -1.3900
18 1 3.4373 1.4581 -2.1983
19 6 4.9524 0.0244 -1.5223
20 6 6.2837 0.3430 -0.8096
21 7 6.4429 1.8046 -0.8154
22 6 7.4874 2.4958 -0.2618
23 1 7.5126 3.5739 -0.3196
24 6 8.5140 1.8106 0.3735
25 7 8.4831 0.4966 0.4443
26 14 9.9386 2.7534 1.1293
27 1 9.6198 3.0839 2.5415
28 1 11.1657 1.9186 1.0812
29 1 10.1626 4.0073 0.3659
30 6 5.2923 2.4028 -1.5167
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 1.8933 -0.5139 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 1.7288 1.9378 0.9198
37 1 1.6262 1.9741 -0.8569
38 1 2.2934 0.0668 3.4151
39 1 3.0696 -0.5624 1.9238
40 1 4.2921 -2.4694 3.7891
41 1 6.3847 -2.6421 5.0815
42 1 7.6664 -0.6092 5.6158
43 1 6.8637 1.5896 4.8773
44 1 4.4297 -0.7880 -1.0177
45 1 5.1248 -0.2189 -2.5707
46 1 6.2513 -0.0223 0.2167
47 1 7.1110 -0.1244 -1.3435
48 1 9.2003 0.0179 0.8886
49 1 5.5348 2.5746 -2.5654
50 1 4.9989 3.3363 -1.0364
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267465641.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:09:04
Heat of formation + Delta-G solvation = 49.213145 kcal
Electronic energy + Delta-G solvation = -33381.508908 eV
Core-core repulsion = 29377.533559 eV
Total energy + Delta-G solvation = -4003.975348 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.18194 -39.40758 -37.13188 -35.91196 -35.64290 -32.82220 -32.40636 -31.46329
-29.68625 -29.29764 -28.79440 -27.24801 -25.79004 -24.51117 -23.81665 -22.13305
-21.98445 -21.20372 -20.72940 -19.77184 -18.33345 -17.27594 -16.70431 -16.60891
-16.41127 -15.49421 -15.31534 -15.11394 -14.63462 -14.33242 -14.23425 -13.80120
-13.57076 -13.51975 -13.27736 -13.04906 -12.90992 -12.63073 -12.49360 -12.18096
-11.95960 -11.88298 -11.66479 -11.56872 -11.45855 -11.30844 -11.19085 -11.10457
-10.70620 -10.66884 -10.62786 -10.55106 -10.43016 -9.90035 -9.85199 -9.62353
-9.34274 -8.64833 -8.50802 -8.32185 -7.78360 -7.65518 -6.16835 -5.32698
-2.57046 1.65081 1.76434 3.22106 3.37018 3.59007 3.63759 3.64224
3.81394 4.13529 4.59999 4.64870 4.79908 4.81475 4.84641 4.97864
5.11828 5.24428 5.29093 5.35788 5.39596 5.46419 5.49014 5.54591
5.62502 5.68561 5.70706 5.76066 5.77754 5.84479 5.91609 5.94062
5.96966 6.04593 6.12429 6.25891 6.30170 6.36210 6.57625 6.64676
6.65781 6.69561 6.75101 6.81376 6.81810 6.94296 7.32847 7.54866
7.84502 7.95367 8.02593 8.19340 8.63204 9.17321 9.59256 10.21794
10.87582 11.80415
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.008786 B = 0.006733 C = 0.004428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3186.255117 B = 4157.547848 C = 6321.186721
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.154 4.154
3 C 0.112 3.888
4 N -0.610 5.610
5 C 0.439 3.561
6 O -0.373 6.373
7 C 0.064 3.936
8 H 0.121 0.879
9 C -0.097 4.097
10 C -0.174 4.174
11 C -0.071 4.071
12 C -0.152 4.152
13 C -0.082 4.082
14 C -0.125 4.125
15 C 0.129 3.871
16 O -0.280 6.280
17 C 0.135 3.865
18 H 0.081 0.919
19 C -0.160 4.160
20 C 0.192 3.808
21 N -0.565 5.565
22 C -0.190 4.190
23 H 0.064 0.936
24 C -0.003 4.003
25 N -0.917 5.917
26 Si 0.895 3.105
27 H -0.294 1.294
28 H -0.295 1.295
29 H -0.287 1.287
30 C 0.130 3.870
31 H 0.054 0.946
32 H 0.053 0.947
33 H 0.054 0.946
34 H 0.067 0.933
35 H 0.070 0.930
36 H 0.071 0.929
37 H 0.072 0.928
38 H 0.090 0.910
39 H 0.098 0.902
40 H 0.118 0.882
41 H 0.122 0.878
42 H 0.125 0.875
43 H 0.124 0.876
44 H 0.055 0.945
45 H 0.060 0.940
46 H 0.057 0.943
47 H 0.028 0.972
48 H 0.243 0.757
49 H 0.021 0.979
50 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.396 -3.963 3.557 18.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.193 4.193
3 C -0.012 4.012
4 N -0.350 5.350
5 C 0.220 3.780
6 O -0.235 6.235
7 C 0.004 3.996
8 H 0.138 0.862
9 C -0.134 4.134
10 C -0.175 4.175
11 C -0.089 4.089
12 C -0.170 4.170
13 C -0.100 4.100
14 C -0.143 4.143
15 C 0.084 3.916
16 O -0.192 6.192
17 C 0.031 3.969
18 H 0.099 0.901
19 C -0.199 4.199
20 C 0.068 3.932
21 N -0.290 5.290
22 C -0.319 4.319
23 H 0.082 0.918
24 C -0.198 4.198
25 N -0.567 5.567
26 Si 0.728 3.272
27 H -0.222 1.222
28 H -0.222 1.222
29 H -0.213 1.213
30 C 0.002 3.998
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.073 0.927
34 H 0.086 0.914
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.109 0.891
39 H 0.116 0.884
40 H 0.136 0.864
41 H 0.140 0.860
42 H 0.143 0.857
43 H 0.142 0.858
44 H 0.074 0.926
45 H 0.078 0.922
46 H 0.075 0.925
47 H 0.046 0.954
48 H 0.053 0.947
49 H 0.038 0.962
50 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -16.391 -3.687 3.720 17.208
hybrid contribution 0.506 0.377 0.320 0.707
sum -15.885 -3.310 4.040 16.721
Atomic orbital electron populations
1.21706 0.95537 1.01696 1.01712 1.22246 0.95687 0.98044 1.03302
1.21558 0.81100 0.96241 1.02273 1.47822 1.04811 1.76523 1.05828
1.20865 0.90012 0.82018 0.85061 1.91617 1.10255 1.37769 1.83843
1.23409 0.91489 0.96543 0.88176 0.86156 1.21824 0.96653 0.94907
0.99985 1.20606 0.97779 0.94385 1.04745 1.20136 0.96193 0.95296
0.97240 1.20887 0.96107 0.98295 1.01705 1.20779 0.98910 0.91521
0.98802 1.20216 0.93351 0.98681 1.02092 1.19404 0.92398 0.85444
0.94351 1.86880 1.54218 1.29621 1.48511 1.22282 0.94045 0.97398
0.83203 0.90145 1.23384 1.00112 0.95992 1.00431 1.21070 0.89334
0.84732 0.98060 1.44091 1.20440 1.01395 1.63121 1.18733 0.95829
0.89675 1.27696 0.91768 1.24510 0.98472 0.95428 1.01404 1.69936
1.32891 1.04905 1.48927 0.86352 0.82774 0.78562 0.79548 1.22178
1.22228 1.21315 1.21755 0.88183 0.94507 0.95332 0.92717 0.92751
0.92718 0.91382 0.91129 0.91104 0.90964 0.89139 0.88423 0.86401
0.85986 0.85658 0.85845 0.92641 0.92181 0.92505 0.95399 0.94692
0.96160 0.94840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16
2 C -0.15 -1.46 6.21 -26.73 -0.17 -1.63 16
3 C 0.11 1.21 5.18 -4.04 -0.02 1.19 16
4 N -0.61 -9.63 2.56 -163.67 -0.42 -10.05 16
5 C 0.44 8.50 6.34 -10.99 -0.07 8.43 16
6 O -0.37 -9.41 8.32 -13.12 -0.11 -9.52 16
7 C 0.06 1.03 3.23 -26.98 -0.09 0.95 16
8 H 0.12 1.52 6.43 -51.93 -0.33 1.18 16
9 C -0.10 -1.34 5.92 -26.52 -0.16 -1.50 16
10 C -0.17 -2.96 6.26 -104.10 -0.65 -3.61 16
11 C -0.07 -1.09 10.03 -39.72 -0.40 -1.49 16
12 C -0.15 -2.31 10.07 -39.52 -0.40 -2.71 16
13 C -0.08 -1.36 10.02 -39.67 -0.40 -1.75 16
14 C -0.12 -2.38 10.06 -39.31 -0.40 -2.78 16
15 C 0.13 2.53 6.68 -38.95 -0.26 2.27 16
16 O -0.28 -5.55 10.50 -38.82 -0.41 -5.96 16
17 C 0.13 2.32 3.80 -65.78 -0.25 2.07 16
18 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16
19 C -0.16 -3.07 6.51 -24.90 -0.16 -3.23 16
20 C 0.19 4.93 4.21 -3.06 -0.01 4.92 16
21 N -0.57 -15.01 1.74 -170.08 -0.30 -15.30 16
22 C -0.19 -5.66 8.79 -15.06 -0.13 -5.80 16
23 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16
24 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16
25 N -0.92 -28.66 10.31 55.49 0.57 -28.09 16
26 Si 0.90 24.06 29.55 -169.99 -5.02 19.04 16
27 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16
28 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16
29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16
30 C 0.13 2.80 6.21 -2.53 -0.02 2.79 16
31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.07 0.71 4.61 -51.93 -0.24 0.47 16
36 H 0.07 0.67 5.89 -51.93 -0.31 0.36 16
37 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16
38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
39 H 0.10 1.31 5.22 -51.93 -0.27 1.04 16
40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16
41 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16
42 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16
43 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16
44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16
45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
46 H 0.06 1.66 5.78 -51.93 -0.30 1.36 16
47 H 0.03 0.81 7.50 -51.93 -0.39 0.42 16
48 H 0.24 7.50 8.31 -40.82 -0.34 7.16 16
49 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
50 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
LS Contribution 382.25 15.07 5.76 5.76
Total: -1.00 -36.16 382.25 -10.93 -47.10
By element:
Atomic # 1 Polarization: 7.50 SS G_CDS: -7.71 Total: -0.21 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -3.30 Total: -2.77 kcal
Atomic # 7 Polarization: -53.30 SS G_CDS: -0.14 Total: -53.44 kcal
Atomic # 8 Polarization: -14.96 SS G_CDS: -0.52 Total: -15.48 kcal
Atomic # 14 Polarization: 24.06 SS G_CDS: -5.02 Total: 19.04 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -36.16 -10.93 -47.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267465641.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.310 kcal
(2) G-P(sol) polarization free energy of solvation -36.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.097 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds