Wall clock time and date at job start Wed Apr 1 2020 04:09:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.46793 * 2 1
4 4 N 1.46503 * 109.47172 * 183.50553 * 3 2 1
5 5 C 1.34775 * 119.99996 * 264.70311 * 4 3 2
6 6 O 1.21282 * 119.99764 * 184.60709 * 5 4 3
7 7 C 1.50700 * 120.00234 * 4.60502 * 5 4 3
8 8 H 1.08997 * 110.66383 * 316.16464 * 7 5 4
9 9 C 1.54710 * 110.74579 * 79.57991 * 7 5 4
10 10 C 1.51638 * 101.92959 * 93.04960 * 9 7 5
11 11 C 1.37747 * 132.17494 * 195.85721 * 10 9 7
12 12 C 1.38344 * 119.97959 * 179.02513 * 11 10 9
13 13 C 1.38292 * 119.76861 * 359.97438 * 12 11 10
14 14 C 1.37934 * 120.34855 * 0.22386 * 13 12 11
15 15 C 1.38889 * 107.04211 * 15.34936 * 10 9 7
16 16 O 1.36130 * 111.23095 * 1.11924 * 15 10 9
17 17 C 1.46502 * 119.99816 * 84.69554 * 4 3 2
18 18 H 1.09001 * 110.88464 * 9.44298 * 17 4 3
19 19 C 1.55160 * 111.00215 * 245.56519 * 17 4 3
20 20 C 1.54322 * 102.94395 * 277.38840 * 19 17 4
21 21 N 1.47026 * 107.26931 * 337.81005 * 20 19 17
22 22 C 1.36937 * 125.64699 * 178.98307 * 21 20 19
23 23 H 1.07996 * 119.99923 * 179.97438 * 22 21 20
24 24 C 1.38817 * 119.99873 * 359.97438 * 22 21 20
25 25 N 1.31620 * 120.00047 * 359.97438 * 24 22 21
26 26 Si 1.86801 * 119.99851 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47270 * 90.00097 * 26 24 22
28 28 H 1.48502 * 109.46906 * 209.99870 * 26 24 22
29 29 H 1.48499 * 109.46946 * 329.99851 * 26 24 22
30 30 C 1.47426 * 108.70426 * 358.94114 * 21 20 19
31 31 H 1.09002 * 109.47227 * 180.02562 * 1 2 3
32 32 H 1.08995 * 109.47487 * 299.99921 * 1 2 3
33 33 H 1.08998 * 109.47170 * 60.00144 * 1 2 3
34 34 H 1.08996 * 109.46875 * 239.99632 * 2 1 3
35 35 H 1.09003 * 109.46546 * 119.99537 * 2 1 3
36 36 H 1.09000 * 109.47144 * 63.50797 * 3 2 1
37 37 H 1.09003 * 109.47265 * 303.50644 * 3 2 1
38 38 H 1.09003 * 110.93248 * 211.20150 * 9 7 5
39 39 H 1.08997 * 110.94354 * 334.88574 * 9 7 5
40 40 H 1.08002 * 120.00676 * 359.03748 * 11 10 9
41 41 H 1.08001 * 120.11700 * 179.97438 * 12 11 10
42 42 H 1.08000 * 119.82515 * 180.20823 * 13 12 11
43 43 H 1.08004 * 119.87749 * 180.02562 * 14 13 12
44 44 H 1.08991 * 110.72351 * 35.75612 * 19 17 4
45 45 H 1.09003 * 110.71523 * 159.02420 * 19 17 4
46 46 H 1.08995 * 109.87902 * 97.22753 * 20 19 17
47 47 H 1.08994 * 109.88296 * 218.23916 * 20 19 17
48 48 H 0.96998 * 119.99697 * 180.02562 * 25 24 22
49 49 H 1.09002 * 110.36349 * 265.29003 * 30 21 20
50 50 H 1.08997 * 110.36340 * 142.96816 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5025 1.4434 -0.0845
5 6 4.2424 1.5279 1.0389
6 8 5.4499 1.6130 0.9648
7 6 3.5692 1.5168 2.3872
8 1 2.6905 2.1617 2.3837
9 6 3.1933 0.0739 2.8001
10 6 4.4054 -0.3466 3.6084
11 6 4.8556 -1.5793 4.0270
12 6 6.0299 -1.6768 4.7518
13 6 6.7479 -0.5338 5.0529
14 6 6.2968 0.7020 4.6383
15 6 5.1130 0.8093 3.9123
16 8 4.4885 1.9136 3.4188
17 6 4.1609 1.3524 -1.3900
18 1 3.4373 1.4581 -2.1983
19 6 4.9524 0.0244 -1.5223
20 6 6.2837 0.3430 -0.8096
21 7 6.4429 1.8046 -0.8154
22 6 7.4874 2.4958 -0.2618
23 1 7.5126 3.5739 -0.3196
24 6 8.5140 1.8106 0.3735
25 7 8.4831 0.4966 0.4443
26 14 9.9386 2.7534 1.1293
27 1 9.6198 3.0839 2.5415
28 1 11.1657 1.9186 1.0812
29 1 10.1626 4.0073 0.3659
30 6 5.2923 2.4028 -1.5167
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 1.8933 -0.5139 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 1.7288 1.9378 0.9198
37 1 1.6262 1.9741 -0.8569
38 1 2.2934 0.0668 3.4151
39 1 3.0696 -0.5624 1.9238
40 1 4.2921 -2.4694 3.7891
41 1 6.3847 -2.6421 5.0815
42 1 7.6664 -0.6092 5.6158
43 1 6.8637 1.5896 4.8773
44 1 4.4297 -0.7880 -1.0177
45 1 5.1248 -0.2189 -2.5707
46 1 6.2513 -0.0223 0.2167
47 1 7.1110 -0.1244 -1.3435
48 1 9.2003 0.0179 0.8886
49 1 5.5348 2.5746 -2.5654
50 1 4.9989 3.3363 -1.0364
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267465641.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:09:03
Heat of formation + Delta-G solvation = 27.853688 kcal
Electronic energy + Delta-G solvation = -33382.435123 eV
Core-core repulsion = 29377.533559 eV
Total energy + Delta-G solvation = -4004.901564 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.49111 -40.84527 -38.48798 -37.41610 -36.99341 -34.44485 -33.59027 -32.99337
-30.99824 -30.95640 -30.35073 -28.87654 -26.72943 -26.41714 -25.27980 -23.45749
-22.97221 -22.37621 -22.10136 -21.68944 -19.73041 -18.83980 -18.27810 -17.94146
-17.87910 -16.88804 -16.63946 -16.47310 -16.40245 -15.73838 -15.63312 -15.44722
-15.07828 -14.77446 -14.37642 -14.27805 -14.10734 -13.83611 -13.67249 -13.61574
-13.56112 -13.34586 -12.99179 -12.83891 -12.77936 -12.71930 -12.67104 -12.48384
-12.45711 -12.24443 -12.00026 -11.87130 -11.76136 -11.66057 -11.55029 -11.37057
-11.23863 -10.51764 -10.12888 -9.79870 -9.28290 -9.00968 -8.24553 -7.62058
-4.83345 0.37185 0.44623 1.36576 1.40963 1.45967 1.91183 2.08970
2.51033 2.58870 2.85585 3.43192 3.51086 3.56749 3.64359 3.86695
3.93537 4.01353 4.06150 4.13532 4.21046 4.24002 4.30809 4.36782
4.38961 4.51371 4.55682 4.62678 4.67331 4.71845 4.74947 4.78363
4.87322 4.94323 5.00206 5.06150 5.09410 5.12012 5.17770 5.38073
5.38754 5.40974 5.44902 5.53783 5.54086 5.60523 5.71325 5.84339
6.00260 6.07552 6.24422 6.43172 6.74228 7.34774 7.78642 8.06252
8.69275 9.49206
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.008786 B = 0.006733 C = 0.004428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3186.255117 B = 4157.547848 C = 6321.186721
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.148 4.148
3 C 0.105 3.895
4 N -0.603 5.603
5 C 0.432 3.568
6 O -0.446 6.446
7 C 0.061 3.939
8 H 0.160 0.840
9 C -0.082 4.082
10 C -0.183 4.183
11 C -0.075 4.075
12 C -0.151 4.151
13 C -0.094 4.094
14 C -0.164 4.164
15 C 0.094 3.906
16 O -0.310 6.310
17 C 0.150 3.850
18 H 0.133 0.867
19 C -0.144 4.144
20 C 0.207 3.793
21 N -0.577 5.577
22 C -0.188 4.188
23 H 0.055 0.945
24 C -0.058 4.058
25 N -0.939 5.939
26 Si 0.946 3.054
27 H -0.303 1.303
28 H -0.295 1.295
29 H -0.274 1.274
30 C 0.123 3.877
31 H 0.057 0.943
32 H 0.064 0.936
33 H 0.061 0.939
34 H 0.060 0.940
35 H 0.064 0.936
36 H 0.088 0.912
37 H 0.096 0.904
38 H 0.132 0.868
39 H 0.107 0.893
40 H 0.154 0.846
41 H 0.156 0.844
42 H 0.144 0.856
43 H 0.104 0.896
44 H 0.069 0.931
45 H 0.079 0.921
46 H 0.015 0.985
47 H -0.022 1.022
48 H 0.231 0.769
49 H 0.032 0.968
50 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.486 -4.961 2.664 22.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.187 4.187
3 C -0.016 4.016
4 N -0.341 5.341
5 C 0.216 3.784
6 O -0.313 6.313
7 C 0.002 3.998
8 H 0.177 0.823
9 C -0.118 4.118
10 C -0.184 4.184
11 C -0.093 4.093
12 C -0.169 4.169
13 C -0.112 4.112
14 C -0.182 4.182
15 C 0.049 3.951
16 O -0.223 6.223
17 C 0.046 3.954
18 H 0.151 0.849
19 C -0.183 4.183
20 C 0.083 3.917
21 N -0.302 5.302
22 C -0.319 4.319
23 H 0.073 0.927
24 C -0.250 4.250
25 N -0.591 5.591
26 Si 0.778 3.222
27 H -0.232 1.232
28 H -0.222 1.222
29 H -0.200 1.200
30 C -0.004 4.004
31 H 0.076 0.924
32 H 0.083 0.917
33 H 0.081 0.919
34 H 0.079 0.921
35 H 0.083 0.917
36 H 0.106 0.894
37 H 0.114 0.886
38 H 0.149 0.851
39 H 0.124 0.876
40 H 0.171 0.829
41 H 0.174 0.826
42 H 0.161 0.839
43 H 0.122 0.878
44 H 0.088 0.912
45 H 0.098 0.902
46 H 0.033 0.967
47 H -0.004 1.004
48 H 0.040 0.960
49 H 0.049 0.951
50 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges -20.568 -4.664 2.792 21.275
hybrid contribution 1.700 0.737 0.584 1.943
sum -18.868 -3.927 3.377 19.566
Atomic orbital electron populations
1.21662 0.93509 1.02280 1.02657 1.22159 0.97269 0.96563 1.02673
1.21948 0.77462 0.97878 1.04359 1.47886 1.06978 1.74915 1.04336
1.21563 0.89581 0.80430 0.86875 1.91594 1.13276 1.41288 1.85182
1.23688 0.91404 0.99097 0.85639 0.82337 1.21904 0.96670 0.92956
1.00313 1.21090 0.98711 0.94007 1.04570 1.20639 0.96332 0.96031
0.96305 1.21361 0.95777 0.99078 1.00701 1.21095 0.99853 0.91211
0.99005 1.20436 0.94324 0.99326 1.04160 1.19736 0.93252 0.86613
0.95526 1.86822 1.55192 1.30783 1.49546 1.22193 0.93814 0.93896
0.85506 0.84916 1.23204 0.96734 0.97601 1.00761 1.20681 0.91215
0.84001 0.95838 1.44197 1.21116 1.02048 1.62811 1.18916 0.96717
0.89477 1.26752 0.92734 1.25106 1.00884 0.96219 1.02831 1.70172
1.32967 1.05940 1.50023 0.85515 0.80380 0.77997 0.78268 1.23203
1.22203 1.19960 1.21980 0.88328 0.95278 0.94810 0.92376 0.91690
0.91946 0.92144 0.91718 0.89376 0.88566 0.85059 0.87554 0.82875
0.82617 0.83853 0.87751 0.91215 0.90210 0.96660 1.00366 0.95955
0.95056 0.96012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.32 9.91 71.98 0.71 -0.61 16
2 C -0.15 -2.08 6.21 30.59 0.19 -1.89 16
3 C 0.11 1.74 5.18 86.38 0.45 2.19 16
4 N -0.60 -17.28 2.56 -790.13 -2.02 -19.31 16
5 C 0.43 16.42 6.34 87.66 0.56 16.98 16
6 O -0.45 -23.28 8.32 14.82 0.12 -23.16 16
7 C 0.06 1.88 3.23 30.43 0.10 1.98 16
8 H 0.16 3.47 6.43 -2.39 -0.02 3.46 16
9 C -0.08 -2.04 5.92 30.73 0.18 -1.86 16
10 C -0.18 -6.08 6.26 -19.53 -0.12 -6.20 16
11 C -0.08 -2.21 10.03 22.18 0.22 -1.98 16
12 C -0.15 -4.48 10.07 22.31 0.22 -4.25 16
13 C -0.09 -3.22 10.02 22.21 0.22 -3.00 16
14 C -0.16 -6.75 10.06 22.45 0.23 -6.52 16
15 C 0.09 3.82 6.68 22.68 0.15 3.97 16
16 O -0.31 -12.68 10.50 -77.18 -0.81 -13.49 16
17 C 0.15 4.73 3.80 46.38 0.18 4.90 16
18 H 0.13 2.92 7.91 -2.39 -0.02 2.90 16
19 C -0.14 -5.28 6.51 31.78 0.21 -5.07 16
20 C 0.21 10.99 4.21 86.73 0.37 11.36 16
21 N -0.58 -31.57 1.74 -692.00 -1.20 -32.77 16
22 C -0.19 -11.69 8.79 84.03 0.74 -10.95 16
23 H 0.05 3.39 7.83 -2.91 -0.02 3.36 16
24 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16
25 N -0.94 -62.18 10.31 21.65 0.22 -61.96 16
26 Si 0.95 51.98 29.55 68.60 2.03 54.01 16
27 H -0.30 -16.95 7.11 99.48 0.71 -16.24 16
28 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16
29 H -0.27 -14.29 7.11 99.48 0.71 -13.58 16
30 C 0.12 5.19 6.21 86.85 0.54 5.73 16
31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16
33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
35 H 0.06 1.00 4.61 -2.39 -0.01 0.99 16
36 H 0.09 1.20 5.89 -2.39 -0.01 1.18 16
37 H 0.10 1.22 8.01 -2.39 -0.02 1.20 16
38 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16
39 H 0.11 2.48 5.22 -2.39 -0.01 2.47 16
40 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16
41 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16
42 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16
43 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16
44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
45 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16
46 H 0.02 0.95 5.78 -2.39 -0.01 0.93 16
47 H -0.02 -1.33 7.50 -2.39 -0.02 -1.35 16
48 H 0.23 15.16 8.31 -92.71 -0.77 14.39 16
49 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16
50 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
Total: -1.00 -88.62 382.25 4.88 -83.74
By element:
Atomic # 1 Polarization: 10.46 SS G_CDS: 0.94 Total: 11.39 kcal
Atomic # 6 Polarization: -4.06 SS G_CDS: 5.60 Total: 1.54 kcal
Atomic # 7 Polarization: -111.03 SS G_CDS: -3.00 Total: -114.03 kcal
Atomic # 8 Polarization: -35.96 SS G_CDS: -0.69 Total: -36.65 kcal
Atomic # 14 Polarization: 51.98 SS G_CDS: 2.03 Total: 54.01 kcal
Total: -88.62 4.88 -83.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267465641.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.590 kcal
(2) G-P(sol) polarization free energy of solvation -88.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds