Wall clock time and date at job start Wed Apr 1 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 H 1.09001 * 109.47338 * 303.22806 * 3 2 1 5 5 C 1.53007 * 109.46767 * 183.23116 * 3 2 1 6 6 N 1.46500 * 109.47154 * 184.99987 * 5 3 2 7 7 C 1.34772 * 120.00454 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99340 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00351 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47015 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99770 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00171 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99617 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00393 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47119 * 89.99596 * 15 13 11 17 17 H 1.48497 * 109.47639 * 210.00058 * 15 13 11 18 18 H 1.48503 * 109.47118 * 330.00054 * 15 13 11 19 19 N 1.46892 * 109.47525 * 63.23124 * 3 2 1 20 20 C 1.46904 * 111.00134 * 58.41132 * 19 3 2 21 21 C 1.53003 * 109.47250 * 174.57054 * 20 19 3 22 22 H 1.08993 * 110.55078 * 305.70187 * 21 20 19 23 23 C 1.54997 * 110.61420 * 182.82082 * 21 20 19 24 24 C 1.54995 * 102.00649 * 204.59597 * 23 21 20 25 25 C 1.53002 * 110.33924 * 262.02658 * 24 23 21 26 26 C 1.53003 * 110.68230 * 139.48347 * 24 23 21 27 27 C 1.54095 * 104.25507 * 20.66855 * 24 23 21 28 28 O 1.43748 * 107.29335 * 2.16402 * 27 24 23 29 29 H 1.09003 * 109.47251 * 173.76130 * 1 2 3 30 30 H 1.09006 * 109.46936 * 293.76047 * 1 2 3 31 31 H 1.08997 * 109.47047 * 53.75353 * 1 2 3 32 32 H 1.08995 * 109.46716 * 240.00004 * 2 1 3 33 33 H 1.09000 * 109.46811 * 119.99953 * 2 1 3 34 34 H 1.09001 * 109.47409 * 64.99964 * 5 3 2 35 35 H 1.08998 * 109.47101 * 304.99347 * 5 3 2 36 36 H 0.97009 * 119.99528 * 359.97438 * 6 5 3 37 37 H 1.08997 * 109.46890 * 299.99886 * 9 7 6 38 38 H 1.09001 * 109.47139 * 59.99583 * 9 7 6 39 39 H 0.97003 * 119.99787 * 180.02562 * 14 13 11 40 40 H 1.00903 * 111.00050 * 294.45787 * 19 3 2 41 41 H 1.09006 * 109.46738 * 294.56638 * 20 19 3 42 42 H 1.09002 * 109.47322 * 54.56795 * 20 19 3 43 43 H 1.08996 * 110.91333 * 322.67124 * 23 21 20 44 44 H 1.08997 * 110.90943 * 86.28033 * 23 21 20 45 45 H 1.08994 * 109.47385 * 176.22114 * 25 24 23 46 46 H 1.09006 * 109.46836 * 296.21498 * 25 24 23 47 47 H 1.09000 * 109.46884 * 56.21375 * 25 24 23 48 48 H 1.09001 * 109.46876 * 303.57532 * 26 24 23 49 49 H 1.08995 * 109.47515 * 63.58111 * 26 24 23 50 50 H 1.09004 * 109.46674 * 183.58340 * 26 24 23 51 51 H 1.09003 * 109.87680 * 242.74277 * 27 24 23 52 52 H 1.09000 * 109.87765 * 121.58876 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 -0.8596 5 6 3.5679 1.4432 -0.0813 6 7 4.0627 2.8169 0.0388 7 6 5.3871 3.0625 -0.0061 8 8 6.1693 2.1462 -0.1455 9 6 5.8960 4.4755 0.1180 10 16 7.7035 4.4764 0.0217 11 6 8.0179 6.2021 0.1888 12 1 7.1954 6.8920 0.3067 13 6 9.3228 6.6747 0.1701 14 7 9.5577 7.9638 0.2955 15 14 10.7456 5.4815 -0.0330 16 1 11.0488 5.3139 -1.4770 17 1 11.9426 6.0148 0.6655 18 1 10.3764 4.1669 0.5511 19 7 1.6151 2.1121 1.2365 20 6 2.1188 1.4019 2.4196 21 6 1.7730 2.1993 3.6788 22 1 2.1411 3.2219 3.5972 23 6 2.3543 1.5088 4.9389 24 6 1.4151 2.0318 6.0554 25 6 2.0593 3.2143 6.7817 26 6 1.0792 0.9151 7.0460 27 6 0.1484 2.4854 5.3041 28 8 0.3482 2.1888 3.9118 29 1 -0.3634 -1.0216 -0.1117 30 1 -0.3633 0.4141 0.9406 31 1 -0.3633 0.6076 -0.8288 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8810 1.0266 -1.0387 35 1 3.9751 0.8383 0.7288 36 1 3.4369 3.5498 0.1499 37 1 5.4884 5.0809 -0.6915 38 1 5.5833 4.8916 1.0757 39 1 10.4697 8.2941 0.2821 40 1 0.6110 2.2050 1.2707 41 1 1.6569 0.4161 2.4756 42 1 3.2007 1.2925 2.3446 43 1 2.2886 0.4242 4.8534 44 1 3.3834 1.8222 5.1143 45 1 1.3609 3.6130 7.5174 46 1 2.9665 2.8806 7.2855 47 1 2.3096 3.9915 6.0596 48 1 0.6394 0.0741 6.5100 49 1 1.9897 0.5895 7.5489 50 1 0.3690 1.2865 7.7848 51 1 0.0024 3.5573 5.4375 52 1 -0.7191 1.9416 5.6782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269372148.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:31 Heat of formation + Delta-G solvation = -104.458855 kcal Electronic energy + Delta-G solvation = -28558.888650 eV Core-core repulsion = 24683.693535 eV Total energy + Delta-G solvation = -3875.195115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.35756 -39.40970 -38.00931 -34.95686 -33.93859 -32.85396 -32.40579 -30.53765 -29.80793 -27.78532 -27.68934 -26.34718 -25.59603 -25.37018 -23.42552 -21.77671 -20.42059 -20.07094 -19.50749 -17.80445 -17.22239 -16.61338 -16.28106 -15.87515 -15.66456 -15.45915 -15.09755 -14.93436 -14.88578 -14.47291 -14.13574 -13.90476 -13.82952 -13.70140 -13.62724 -13.26391 -13.00627 -12.82624 -12.75466 -12.59287 -12.25693 -12.17818 -11.93678 -11.83068 -11.68177 -11.55200 -11.27347 -11.23025 -11.13125 -11.00869 -10.98342 -10.94365 -10.77231 -10.54992 -9.87317 -9.82697 -9.43429 -8.97751 -8.82721 -8.68584 -8.45227 -6.87333 -6.25871 -3.96839 2.83667 3.08776 3.34316 3.38093 3.52845 3.54911 3.69508 3.88886 4.07762 4.35576 4.36105 4.44363 4.46748 4.61167 4.70953 4.82489 4.82794 4.87271 4.92030 4.97052 5.10250 5.13254 5.16817 5.19750 5.26686 5.28302 5.30004 5.35974 5.41163 5.44674 5.50061 5.54634 5.56374 5.57824 5.63378 5.70951 5.75125 5.79019 5.82283 5.83639 5.87687 5.93421 5.95950 6.10026 6.59112 6.63974 6.77647 7.12028 7.81620 7.97496 8.45351 8.62511 9.20548 10.83464 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.002587 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.847554 B =10822.715901 C =12793.462057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C 0.075 3.925 4 H 0.091 0.909 5 C 0.129 3.871 6 N -0.723 5.723 7 C 0.528 3.472 8 O -0.527 6.527 9 C -0.122 4.122 10 S -0.144 6.144 11 C -0.519 4.519 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.882 5.882 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.235 1.235 19 N -0.677 5.677 20 C 0.061 3.939 21 C 0.081 3.919 22 H 0.080 0.920 23 C -0.142 4.142 24 C -0.100 4.100 25 C -0.141 4.141 26 C -0.136 4.136 27 C 0.057 3.943 28 O -0.376 6.376 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.407 0.593 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.350 0.650 41 H 0.042 0.958 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.059 0.941 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.589 -15.544 9.056 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C -0.036 4.036 4 H 0.110 0.890 5 C 0.004 3.996 6 N -0.377 5.377 7 C 0.314 3.686 8 O -0.403 6.403 9 C -0.272 4.272 10 S 0.082 5.918 11 C -0.667 4.667 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.518 5.518 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.309 5.309 20 C -0.069 4.069 21 C 0.023 3.977 22 H 0.098 0.902 23 C -0.181 4.181 24 C -0.101 4.101 25 C -0.198 4.198 26 C -0.194 4.194 27 C -0.020 4.020 28 O -0.295 6.295 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.242 0.758 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.170 0.830 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.808 -16.500 8.669 28.687 hybrid contribution -0.913 0.459 0.364 1.085 sum -22.720 -16.041 9.033 29.243 Atomic orbital electron populations 1.21761 0.95277 1.01985 1.01987 1.22177 0.96626 0.97879 1.03093 1.21909 0.94748 0.93311 0.93612 0.89045 1.21302 0.91919 0.84541 1.01836 1.45784 1.07075 1.09077 1.75806 1.20266 0.81834 0.90897 0.75605 1.90688 1.55516 1.46106 1.47970 1.23256 1.02616 0.95709 1.05667 1.84759 0.98049 1.12658 1.96308 1.22332 0.96983 0.89776 1.57609 0.89404 1.24716 0.98300 0.95041 0.93313 1.69947 1.21396 1.12478 1.48020 0.86730 0.82171 0.83126 0.79788 1.19246 1.20019 1.15922 1.60527 1.18170 1.51495 1.00701 1.22080 1.01127 0.95158 0.88487 1.23183 0.81064 0.99581 0.93828 0.90221 1.23301 0.99886 1.01123 0.93749 1.21964 0.95447 0.96577 0.96068 1.21894 1.00682 0.96970 1.00256 1.21837 1.01685 0.97422 0.98426 1.23272 0.97215 0.99970 0.81499 1.88823 1.23313 1.92259 1.25139 0.92545 0.92566 0.92419 0.91057 0.91378 0.91370 0.91921 0.75815 0.88632 0.88564 0.91996 0.83029 0.94001 0.89214 0.90487 0.89743 0.92338 0.92054 0.92084 0.92379 0.92221 0.92399 0.92287 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.49 37.16 0.35 -0.61 16 2 C -0.16 -1.11 5.11 -26.73 -0.14 -1.25 16 3 C 0.07 0.60 2.72 -67.71 -0.18 0.41 16 4 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 5 C 0.13 1.43 4.72 -4.04 -0.02 1.41 16 6 N -0.72 -9.46 5.39 -60.29 -0.32 -9.78 16 7 C 0.53 9.53 7.85 -10.99 -0.09 9.44 16 8 O -0.53 -11.50 15.86 5.56 0.09 -11.42 16 9 C -0.12 -2.41 6.16 36.01 0.22 -2.18 16 10 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 11 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 12 H 0.09 2.67 8.03 -52.48 -0.42 2.24 16 13 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 15 Si 0.86 21.99 27.74 -169.99 -4.71 17.27 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 19 N -0.68 -5.58 5.77 -106.72 -0.62 -6.20 16 20 C 0.06 0.52 4.60 -3.82 -0.02 0.51 16 21 C 0.08 0.72 3.57 -25.67 -0.09 0.63 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.14 -1.13 5.71 -24.62 -0.14 -1.27 16 24 C -0.10 -0.71 0.99 -152.88 -0.15 -0.86 16 25 C -0.14 -0.98 8.25 37.16 0.31 -0.67 16 26 C -0.14 -0.82 8.28 37.16 0.31 -0.51 16 27 C 0.06 0.45 7.04 37.73 0.27 0.71 16 28 O -0.38 -3.60 11.03 -35.23 -0.39 -3.99 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.38 7.19 -51.93 -0.37 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.75 6.59 -51.93 -0.34 0.41 16 36 H 0.41 4.61 8.14 -40.82 -0.33 4.28 16 37 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.35 2.82 7.33 -39.29 -0.29 2.53 16 41 H 0.04 0.35 6.52 -51.93 -0.34 0.02 16 42 H 0.09 0.89 6.18 -51.93 -0.32 0.57 16 43 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 44 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 52 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 LS Contribution 418.90 15.07 6.31 6.31 Total: -1.00 -33.28 418.90 -9.45 -42.73 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -9.43 Total: 3.16 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.84 Total: -6.35 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.17 Total: -42.03 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.30 Total: -15.41 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.28 -9.45 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269372148.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.728 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds