Wall clock time and date at job start Wed Apr 1 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 H 1.09001 * 109.47338 * 303.22806 * 3 2 1 5 5 C 1.53007 * 109.46767 * 183.23116 * 3 2 1 6 6 N 1.46500 * 109.47154 * 184.99987 * 5 3 2 7 7 C 1.34772 * 120.00454 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99340 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00351 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47015 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99770 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00171 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99617 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00393 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47119 * 89.99596 * 15 13 11 17 17 H 1.48497 * 109.47639 * 210.00058 * 15 13 11 18 18 H 1.48503 * 109.47118 * 330.00054 * 15 13 11 19 19 N 1.46892 * 109.47525 * 63.23124 * 3 2 1 20 20 C 1.46904 * 111.00134 * 58.41132 * 19 3 2 21 21 C 1.53003 * 109.47250 * 174.57054 * 20 19 3 22 22 H 1.08993 * 110.55078 * 305.70187 * 21 20 19 23 23 C 1.54997 * 110.61420 * 182.82082 * 21 20 19 24 24 C 1.54995 * 102.00649 * 204.59597 * 23 21 20 25 25 C 1.53002 * 110.33924 * 262.02658 * 24 23 21 26 26 C 1.53003 * 110.68230 * 139.48347 * 24 23 21 27 27 C 1.54095 * 104.25507 * 20.66855 * 24 23 21 28 28 O 1.43748 * 107.29335 * 2.16402 * 27 24 23 29 29 H 1.09003 * 109.47251 * 173.76130 * 1 2 3 30 30 H 1.09006 * 109.46936 * 293.76047 * 1 2 3 31 31 H 1.08997 * 109.47047 * 53.75353 * 1 2 3 32 32 H 1.08995 * 109.46716 * 240.00004 * 2 1 3 33 33 H 1.09000 * 109.46811 * 119.99953 * 2 1 3 34 34 H 1.09001 * 109.47409 * 64.99964 * 5 3 2 35 35 H 1.08998 * 109.47101 * 304.99347 * 5 3 2 36 36 H 0.97009 * 119.99528 * 359.97438 * 6 5 3 37 37 H 1.08997 * 109.46890 * 299.99886 * 9 7 6 38 38 H 1.09001 * 109.47139 * 59.99583 * 9 7 6 39 39 H 0.97003 * 119.99787 * 180.02562 * 14 13 11 40 40 H 1.00903 * 111.00050 * 294.45787 * 19 3 2 41 41 H 1.09006 * 109.46738 * 294.56638 * 20 19 3 42 42 H 1.09002 * 109.47322 * 54.56795 * 20 19 3 43 43 H 1.08996 * 110.91333 * 322.67124 * 23 21 20 44 44 H 1.08997 * 110.90943 * 86.28033 * 23 21 20 45 45 H 1.08994 * 109.47385 * 176.22114 * 25 24 23 46 46 H 1.09006 * 109.46836 * 296.21498 * 25 24 23 47 47 H 1.09000 * 109.46884 * 56.21375 * 25 24 23 48 48 H 1.09001 * 109.46876 * 303.57532 * 26 24 23 49 49 H 1.08995 * 109.47515 * 63.58111 * 26 24 23 50 50 H 1.09004 * 109.46674 * 183.58340 * 26 24 23 51 51 H 1.09003 * 109.87680 * 242.74277 * 27 24 23 52 52 H 1.09000 * 109.87765 * 121.58876 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 -0.8596 5 6 3.5679 1.4432 -0.0813 6 7 4.0627 2.8169 0.0388 7 6 5.3871 3.0625 -0.0061 8 8 6.1693 2.1462 -0.1455 9 6 5.8960 4.4755 0.1180 10 16 7.7035 4.4764 0.0217 11 6 8.0179 6.2021 0.1888 12 1 7.1954 6.8920 0.3067 13 6 9.3228 6.6747 0.1701 14 7 9.5577 7.9638 0.2955 15 14 10.7456 5.4815 -0.0330 16 1 11.0488 5.3139 -1.4770 17 1 11.9426 6.0148 0.6655 18 1 10.3764 4.1669 0.5511 19 7 1.6151 2.1121 1.2365 20 6 2.1188 1.4019 2.4196 21 6 1.7730 2.1993 3.6788 22 1 2.1411 3.2219 3.5972 23 6 2.3543 1.5088 4.9389 24 6 1.4151 2.0318 6.0554 25 6 2.0593 3.2143 6.7817 26 6 1.0792 0.9151 7.0460 27 6 0.1484 2.4854 5.3041 28 8 0.3482 2.1888 3.9118 29 1 -0.3634 -1.0216 -0.1117 30 1 -0.3633 0.4141 0.9406 31 1 -0.3633 0.6076 -0.8288 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8810 1.0266 -1.0387 35 1 3.9751 0.8383 0.7288 36 1 3.4369 3.5498 0.1499 37 1 5.4884 5.0809 -0.6915 38 1 5.5833 4.8916 1.0757 39 1 10.4697 8.2941 0.2821 40 1 0.6110 2.2050 1.2707 41 1 1.6569 0.4161 2.4756 42 1 3.2007 1.2925 2.3446 43 1 2.2886 0.4242 4.8534 44 1 3.3834 1.8222 5.1143 45 1 1.3609 3.6130 7.5174 46 1 2.9665 2.8806 7.2855 47 1 2.3096 3.9915 6.0596 48 1 0.6394 0.0741 6.5100 49 1 1.9897 0.5895 7.5489 50 1 0.3690 1.2865 7.7848 51 1 0.0024 3.5573 5.4375 52 1 -0.7191 1.9416 5.6782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269372148.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:28 Heat of formation + Delta-G solvation = -127.689328 kcal Electronic energy + Delta-G solvation = -28559.895999 eV Core-core repulsion = 24683.693535 eV Total energy + Delta-G solvation = -3876.202464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.06681 -40.61561 -38.92850 -35.61726 -35.10908 -34.66096 -33.50372 -31.56057 -30.84606 -28.71943 -28.27295 -27.82421 -26.95981 -26.10024 -24.18952 -22.48189 -21.62436 -20.96129 -20.17263 -19.76687 -18.02683 -17.70927 -17.35928 -17.17558 -16.96242 -16.52875 -16.23489 -16.02868 -15.75969 -15.64098 -15.07761 -14.90955 -14.79022 -14.63583 -14.53121 -14.43581 -14.23689 -13.86822 -13.59806 -13.40549 -13.33768 -13.15150 -13.00358 -12.79870 -12.74045 -12.67789 -12.49505 -12.31031 -12.21227 -11.88579 -11.83955 -11.77219 -11.61413 -11.54315 -11.39541 -11.16363 -10.96121 -10.55689 -10.52298 -10.03784 -9.38750 -8.98067 -8.50771 -6.21203 1.00678 1.31929 1.47722 1.57605 1.62552 2.24954 2.31514 2.73654 2.87405 2.89275 3.14298 3.47127 3.68513 3.79678 3.85863 3.90991 4.04700 4.10943 4.15445 4.23292 4.25151 4.28061 4.34858 4.42093 4.49707 4.57303 4.59305 4.62617 4.72520 4.74830 4.76753 4.78103 4.82652 4.87411 4.92713 5.01099 5.02223 5.09234 5.13346 5.18863 5.24087 5.27823 5.37814 5.38971 5.48147 5.71735 5.94700 6.02476 6.12411 6.45557 6.58261 6.94431 7.27121 8.61814 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.002587 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.847554 B =10822.715901 C =12793.462057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C 0.086 3.914 4 H 0.103 0.897 5 C 0.128 3.872 6 N -0.698 5.698 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.110 4.110 10 S -0.174 6.174 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.045 3.955 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.236 1.236 19 N -0.679 5.679 20 C 0.067 3.933 21 C 0.083 3.917 22 H 0.065 0.935 23 C -0.142 4.142 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.134 4.134 27 C 0.053 3.947 28 O -0.388 6.388 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.418 0.582 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.277 0.723 40 H 0.355 0.645 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.023 -16.958 9.228 31.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C -0.025 4.025 4 H 0.121 0.879 5 C 0.003 3.997 6 N -0.351 5.351 7 C 0.318 3.682 8 O -0.447 6.447 9 C -0.261 4.261 10 S 0.052 5.948 11 C -0.676 4.676 12 H 0.079 0.921 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.160 1.160 19 N -0.312 5.312 20 C -0.062 4.062 21 C 0.025 3.975 22 H 0.083 0.917 23 C -0.181 4.181 24 C -0.098 4.098 25 C -0.197 4.197 26 C -0.191 4.191 27 C -0.023 4.023 28 O -0.308 6.308 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.256 0.744 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.175 0.825 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.301 -17.900 8.848 30.686 hybrid contribution -0.650 0.917 0.328 1.171 sum -23.951 -16.983 9.176 30.762 Atomic orbital electron populations 1.21714 0.94405 1.02399 1.01994 1.22125 0.97230 0.96849 1.03102 1.21820 0.92362 0.94366 0.93907 0.87879 1.21474 0.93966 0.82772 1.01460 1.45587 1.05416 1.10645 1.73440 1.19919 0.83109 0.89451 0.75707 1.90678 1.56837 1.46774 1.50429 1.23248 0.98056 0.97698 1.07063 1.84663 1.03780 1.09873 1.96439 1.22469 0.96509 0.91362 1.57227 0.92085 1.25576 1.00835 0.96620 0.93028 1.70023 1.22463 1.14119 1.49015 0.85855 0.79465 0.80923 0.80057 1.18690 1.18327 1.16022 1.60507 1.18541 1.51522 1.00602 1.21964 1.00246 0.95395 0.88590 1.23106 0.81062 0.98890 0.94395 0.91679 1.23299 0.99767 1.01245 0.93752 1.21956 0.94886 0.96936 0.95997 1.21888 1.00984 0.96675 1.00188 1.21816 1.02019 0.96951 0.98298 1.23395 0.97907 1.00222 0.80823 1.88800 1.23411 1.92318 1.26222 0.92093 0.92977 0.91831 0.90644 0.91847 0.91557 0.92616 0.74446 0.87149 0.87230 0.91377 0.82471 0.93546 0.90535 0.90133 0.90266 0.91335 0.92034 0.93181 0.92342 0.92095 0.91409 0.92309 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.49 71.98 0.68 -0.84 16 2 C -0.15 -1.84 5.11 30.59 0.16 -1.69 16 3 C 0.09 1.20 2.72 44.92 0.12 1.32 16 4 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 5 C 0.13 2.63 4.72 86.38 0.41 3.04 16 6 N -0.70 -17.13 5.39 -463.05 -2.49 -19.62 16 7 C 0.53 18.67 7.85 87.66 0.69 19.35 16 8 O -0.57 -24.49 15.86 -3.04 -0.05 -24.54 16 9 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 10 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 11 C -0.53 -31.10 10.04 67.95 0.68 -30.42 16 12 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 13 C 0.04 2.64 5.50 84.86 0.47 3.11 16 14 N -0.92 -56.40 13.97 21.65 0.30 -56.10 16 15 Si 0.92 45.38 27.74 68.60 1.90 47.28 16 16 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 19 N -0.68 -10.07 5.77 -491.55 -2.84 -12.90 16 20 C 0.07 1.09 4.60 86.30 0.40 1.49 16 21 C 0.08 1.43 3.57 31.28 0.11 1.54 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 C -0.14 -2.17 5.71 31.96 0.18 -1.99 16 24 C -0.10 -1.28 0.99 -51.13 -0.05 -1.33 16 25 C -0.14 -1.83 8.25 71.98 0.59 -1.24 16 26 C -0.13 -1.40 8.28 71.98 0.60 -0.80 16 27 C 0.05 0.76 7.04 72.35 0.51 1.27 16 28 O -0.39 -6.99 11.03 -148.98 -1.64 -8.63 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.59 7.19 -2.38 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.84 6.32 -2.39 -0.02 0.83 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.28 6.59 -2.39 -0.02 1.26 16 36 H 0.42 8.58 8.14 -92.70 -0.75 7.82 16 37 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 38 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 39 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.35 5.02 7.33 -89.69 -0.66 4.36 16 41 H 0.05 0.72 6.52 -2.38 -0.02 0.71 16 42 H 0.08 1.47 6.18 -2.39 -0.01 1.45 16 43 H 0.08 1.16 7.79 -2.39 -0.02 1.14 16 44 H 0.08 1.28 7.86 -2.39 -0.02 1.26 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.06 0.83 7.69 -2.39 -0.02 0.82 16 52 H 0.09 1.09 7.69 -2.39 -0.02 1.08 16 Total: -1.00 -71.49 418.90 -0.43 -71.92 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.55 Total: 23.55 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.98 Total: -10.98 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -5.03 Total: -88.63 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.69 Total: -33.18 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -71.49 -0.43 -71.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269372148.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.767 kcal (2) G-P(sol) polarization free energy of solvation -71.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds