Wall clock time and date at job start Wed Apr 1 2020 04:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 N 1.46502 * 109.46784 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99317 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00082 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99873 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47054 * 89.99916 * 9 7 5 11 11 H 1.48499 * 109.47049 * 209.99744 * 9 7 5 12 12 H 1.48498 * 109.47093 * 330.00201 * 9 7 5 13 13 N 1.46500 * 109.47111 * 120.00042 * 2 1 3 14 14 C 1.34783 * 119.99794 * 304.32359 * 13 2 1 15 15 O 1.21548 * 119.99684 * 354.95952 * 14 13 2 16 16 C 1.47851 * 119.99712 * 174.96119 * 14 13 2 17 17 C 1.39455 * 120.01544 * 359.97438 * 16 14 13 18 18 C 1.37933 * 119.69726 * 180.02562 * 17 16 14 19 19 C 1.38207 * 120.05914 * 0.11626 * 18 17 16 20 20 C 1.38754 * 120.61326 * 359.94871 * 19 18 17 21 21 C 1.37673 * 119.85930 * 359.87247 * 20 19 18 22 22 C 1.51194 * 121.50429 * 180.50493 * 21 20 19 23 23 C 1.52978 * 109.51244 * 343.04524 * 22 21 20 24 24 O 1.43212 * 108.62554 * 49.11154 * 23 22 21 25 25 C 1.42712 * 113.13320 * 289.29222 * 24 23 22 26 26 C 1.53004 * 109.47164 * 239.99947 * 2 1 3 27 27 C 1.53001 * 117.49937 * 12.86416 * 26 2 1 28 28 C 1.53006 * 117.49567 * 304.20799 * 26 2 1 29 29 H 1.08999 * 109.46909 * 300.00401 * 1 2 3 30 30 H 1.08998 * 109.47124 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47048 * 300.00047 * 3 2 1 33 33 H 1.08993 * 109.46802 * 59.99995 * 3 2 1 34 34 H 0.96997 * 120.00221 * 359.97438 * 4 3 2 35 35 H 0.97002 * 119.99775 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00026 * 124.32280 * 13 2 1 37 37 H 1.08008 * 120.15319 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.97130 * 180.08883 * 18 17 16 39 39 H 1.08001 * 119.69364 * 179.97438 * 19 18 17 40 40 H 1.08996 * 109.67524 * 222.95537 * 22 21 20 41 41 H 1.08995 * 109.42585 * 102.97804 * 22 21 20 42 42 H 1.08999 * 109.64152 * 289.31733 * 23 22 21 43 43 H 1.08999 * 109.63985 * 168.90526 * 23 22 21 44 44 H 1.09008 * 109.33383 * 172.02572 * 25 24 23 45 45 H 1.09001 * 109.33899 * 291.68867 * 25 24 23 46 46 H 1.08997 * 115.54993 * 158.53942 * 26 2 1 47 47 H 1.09008 * 117.49313 * 0.02562 * 27 26 2 48 48 H 1.08997 * 117.49651 * 145.01941 * 27 26 2 49 49 H 1.09000 * 117.49247 * 214.97798 * 28 26 2 50 50 H 1.08993 * 117.49974 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6497 3.5636 -0.0009 7 6 5.5778 2.6283 -0.0013 8 7 6.2360 3.7681 -0.0014 9 14 6.5118 1.0105 -0.0012 10 1 6.7592 0.5817 -1.4013 11 1 7.8094 1.1881 0.6987 12 1 5.7092 -0.0243 0.6989 13 7 2.0183 -0.6906 1.1962 14 6 1.6224 -0.2831 2.4184 15 8 0.9345 0.7123 2.5338 16 6 2.0249 -1.0470 3.6186 17 6 2.8138 -2.1893 3.4864 18 6 3.1850 -2.8973 4.6104 19 6 2.7741 -2.4760 5.8609 20 6 1.9880 -1.3413 6.0013 21 6 1.6141 -0.6244 4.8870 22 6 0.7678 0.6236 4.9978 23 6 0.0996 0.6674 6.3732 24 8 1.0954 0.4246 7.3734 25 6 1.5613 -0.9243 7.3849 26 6 2.0400 -0.7213 -1.2493 27 6 1.0281 -1.0132 -2.3591 28 6 1.5561 -2.1535 -1.4851 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.9900 0.6023 -0.0006 35 1 7.2060 3.7681 -0.0018 36 1 2.6265 -1.4411 1.1085 37 1 3.1325 -2.5183 2.5082 38 1 3.7971 -3.7818 4.5133 39 1 3.0679 -3.0350 6.7371 40 1 0.0015 0.6174 4.2227 41 1 1.4002 1.5027 4.8740 42 1 -0.6719 -0.1004 6.4304 43 1 -0.3477 1.6487 6.5321 44 1 2.4094 -1.0073 8.0646 45 1 0.7601 -1.5800 7.7259 46 1 3.0596 -0.4788 -1.5488 47 1 -0.0009 -0.6909 -2.1994 48 1 1.3821 -0.9630 -3.3888 49 1 2.2573 -2.8530 -1.9402 50 1 0.8748 -2.5820 -0.7501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269626066.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:23 Heat of formation + Delta-G solvation = -2.911386 kcal Electronic energy + Delta-G solvation = -31582.781725 eV Core-core repulsion = 27576.546087 eV Total energy + Delta-G solvation = -4006.235638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89407 -39.77462 -38.05062 -37.31794 -34.88859 -33.76191 -32.83539 -32.19053 -31.18796 -30.23912 -29.26291 -26.17514 -25.74014 -24.48748 -23.68631 -23.14107 -22.33527 -21.85120 -20.52389 -20.05299 -18.90355 -17.83090 -17.66117 -16.62970 -16.39690 -15.92121 -15.73710 -15.40942 -15.23052 -15.07640 -14.60529 -14.43164 -14.19800 -13.95853 -13.55975 -13.38350 -13.03561 -12.85461 -12.77474 -12.47493 -12.40932 -12.22888 -12.10176 -11.99091 -11.77021 -11.74583 -11.54263 -11.15270 -10.95674 -10.87974 -10.80528 -10.69502 -10.32713 -10.23229 -9.97574 -9.92568 -9.54820 -9.16506 -8.99922 -8.80193 -8.77296 -8.62435 -7.13278 -5.71237 -3.04717 0.77284 1.16749 2.93583 3.18425 3.35325 3.36209 3.44330 3.72996 3.78881 3.94962 4.43292 4.56010 4.59263 4.61608 4.68135 4.75440 4.90557 4.94078 5.02438 5.07592 5.11635 5.14142 5.19841 5.27537 5.31614 5.36051 5.53234 5.59597 5.60946 5.64869 5.67975 5.79551 5.83437 5.85549 5.91561 5.94118 6.07937 6.13111 6.14272 6.17495 6.21018 6.30310 6.42718 6.49641 6.54233 6.73082 6.83126 6.96406 7.01097 7.75410 8.06519 8.45366 8.48261 9.27391 9.99529 10.20277 11.47838 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.004180 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.566965 B = 6697.500685 C = 7720.847964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.199 3.801 3 C 0.150 3.850 4 N -0.750 5.750 5 C -0.234 4.234 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.709 5.709 14 C 0.564 3.436 15 O -0.522 6.522 16 C -0.129 4.129 17 C -0.082 4.082 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.136 4.136 21 C -0.010 4.010 22 C -0.119 4.119 23 C 0.055 3.945 24 O -0.376 6.376 25 C 0.105 3.895 26 C -0.156 4.156 27 C -0.167 4.167 28 C -0.183 4.183 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.357 0.643 35 H 0.258 0.742 36 H 0.394 0.606 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 -17.949 8.466 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.114 3.886 3 C 0.022 3.978 4 N -0.395 5.395 5 C -0.364 4.364 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.360 5.360 14 C 0.352 3.648 15 O -0.400 6.400 16 C -0.132 4.132 17 C -0.101 4.101 18 C -0.150 4.150 19 C -0.108 4.108 20 C -0.136 4.136 21 C -0.011 4.011 22 C -0.155 4.155 23 C -0.022 4.022 24 O -0.295 6.295 25 C 0.029 3.971 26 C -0.175 4.175 27 C -0.205 4.205 28 C -0.220 4.220 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.229 0.771 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.120 0.880 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.718 -16.830 8.650 23.372 hybrid contribution 1.458 -1.817 -0.402 2.365 sum -12.259 -18.648 8.248 23.792 Atomic orbital electron populations 1.22273 0.94230 1.01729 1.03905 1.20111 0.93561 0.93121 0.81834 1.21041 0.85074 0.91611 1.00050 1.42593 1.00788 1.05028 1.91136 1.19074 0.89451 0.85904 1.41949 0.89272 1.24633 0.96073 0.96018 1.02567 1.69695 1.06837 1.23720 1.58208 0.86587 0.79861 0.84801 0.77534 1.21224 1.21810 1.20644 1.45903 1.49267 1.35516 1.05276 1.18037 0.80022 0.84004 0.82757 1.90656 1.38671 1.24867 1.85774 1.19955 1.02238 0.97376 0.93634 1.21305 0.95674 0.93948 0.99176 1.20980 1.01135 1.00623 0.92228 1.21122 0.96338 0.95469 0.97821 1.20226 1.00538 0.96818 0.96036 1.19677 0.95270 0.95339 0.90783 1.21556 1.00535 0.95385 0.98052 1.22819 0.89949 1.01949 0.87463 1.88076 1.58128 1.27388 1.55879 1.21374 0.99220 0.84014 0.92523 1.22555 1.00598 0.97378 0.96972 1.23065 0.99337 1.02286 0.95773 1.22974 1.04081 0.91369 1.03623 0.89947 0.91326 0.92920 0.94969 0.92914 0.80997 0.93202 0.77068 0.85641 0.85367 0.85572 0.86611 0.88727 0.93013 0.88185 0.87810 0.91891 0.86609 0.88000 0.88720 0.88941 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 6.98 37.16 0.26 -1.93 16 2 C 0.20 3.08 0.54 -131.82 -0.07 3.01 16 3 C 0.15 3.07 5.03 -4.04 -0.02 3.05 16 4 N -0.75 -18.11 4.84 -59.91 -0.29 -18.40 16 5 C -0.23 -6.82 10.47 -15.06 -0.16 -6.98 16 6 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -30.16 13.97 55.49 0.78 -29.38 16 9 Si 0.88 22.46 27.74 -169.99 -4.71 17.75 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 12 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 13 N -0.71 -10.62 4.67 -48.54 -0.23 -10.85 16 14 C 0.56 9.19 7.14 -12.32 -0.09 9.10 16 15 O -0.52 -9.51 9.40 5.32 0.05 -9.46 16 16 C -0.13 -1.88 5.88 -104.90 -0.62 -2.49 16 17 C -0.08 -1.00 9.53 -39.24 -0.37 -1.37 16 18 C -0.13 -1.36 10.03 -39.70 -0.40 -1.76 16 19 C -0.09 -0.90 9.66 -39.40 -0.38 -1.28 16 20 C -0.14 -1.62 5.80 -104.65 -0.61 -2.23 16 21 C -0.01 -0.14 5.82 -103.98 -0.61 -0.74 16 22 C -0.12 -1.66 4.57 -27.65 -0.13 -1.78 16 23 C 0.05 0.62 6.84 37.15 0.25 0.88 16 24 O -0.38 -4.77 10.80 -35.23 -0.38 -5.15 16 25 C 0.11 1.07 6.66 36.00 0.24 1.31 16 26 C -0.16 -2.17 4.84 -90.61 -0.44 -2.61 16 27 C -0.17 -1.90 9.64 -26.69 -0.26 -2.16 16 28 C -0.18 -1.96 9.82 -26.69 -0.26 -2.22 16 29 H 0.08 1.25 6.03 -51.93 -0.31 0.93 16 30 H 0.07 0.85 6.78 -51.93 -0.35 0.50 16 31 H 0.05 0.62 6.99 -51.93 -0.36 0.26 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.21 6.32 -51.93 -0.33 0.88 16 34 H 0.36 8.30 4.48 -40.82 -0.18 8.12 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.39 5.20 6.52 -40.82 -0.27 4.93 16 37 H 0.13 1.29 6.41 -52.48 -0.34 0.95 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.67 6.02 -51.93 -0.31 1.36 16 41 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 42 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.12 1.89 7.08 -51.93 -0.37 1.52 16 47 H 0.10 1.07 5.88 -51.92 -0.31 0.77 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.09 0.93 7.34 -51.93 -0.38 0.55 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -34.66 384.26 -10.06 -44.73 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -7.32 Total: 15.22 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.75 Total: -10.25 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.26 Total: -58.63 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.33 Total: -14.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.66 -10.06 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626066.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.816 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds