Wall clock time and date at job start Wed Apr 1 2020 04:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 N 1.46502 * 109.46784 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99317 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00082 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99873 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47054 * 89.99916 * 9 7 5 11 11 H 1.48499 * 109.47049 * 209.99744 * 9 7 5 12 12 H 1.48498 * 109.47093 * 330.00201 * 9 7 5 13 13 N 1.46500 * 109.47111 * 120.00042 * 2 1 3 14 14 C 1.34783 * 119.99794 * 304.32359 * 13 2 1 15 15 O 1.21548 * 119.99684 * 354.95952 * 14 13 2 16 16 C 1.47851 * 119.99712 * 174.96119 * 14 13 2 17 17 C 1.39455 * 120.01544 * 359.97438 * 16 14 13 18 18 C 1.37933 * 119.69726 * 180.02562 * 17 16 14 19 19 C 1.38207 * 120.05914 * 0.11626 * 18 17 16 20 20 C 1.38754 * 120.61326 * 359.94871 * 19 18 17 21 21 C 1.37673 * 119.85930 * 359.87247 * 20 19 18 22 22 C 1.51194 * 121.50429 * 180.50493 * 21 20 19 23 23 C 1.52978 * 109.51244 * 343.04524 * 22 21 20 24 24 O 1.43212 * 108.62554 * 49.11154 * 23 22 21 25 25 C 1.42712 * 113.13320 * 289.29222 * 24 23 22 26 26 C 1.53004 * 109.47164 * 239.99947 * 2 1 3 27 27 C 1.53001 * 117.49937 * 12.86416 * 26 2 1 28 28 C 1.53006 * 117.49567 * 304.20799 * 26 2 1 29 29 H 1.08999 * 109.46909 * 300.00401 * 1 2 3 30 30 H 1.08998 * 109.47124 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47048 * 300.00047 * 3 2 1 33 33 H 1.08993 * 109.46802 * 59.99995 * 3 2 1 34 34 H 0.96997 * 120.00221 * 359.97438 * 4 3 2 35 35 H 0.97002 * 119.99775 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00026 * 124.32280 * 13 2 1 37 37 H 1.08008 * 120.15319 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.97130 * 180.08883 * 18 17 16 39 39 H 1.08001 * 119.69364 * 179.97438 * 19 18 17 40 40 H 1.08996 * 109.67524 * 222.95537 * 22 21 20 41 41 H 1.08995 * 109.42585 * 102.97804 * 22 21 20 42 42 H 1.08999 * 109.64152 * 289.31733 * 23 22 21 43 43 H 1.08999 * 109.63985 * 168.90526 * 23 22 21 44 44 H 1.09008 * 109.33383 * 172.02572 * 25 24 23 45 45 H 1.09001 * 109.33899 * 291.68867 * 25 24 23 46 46 H 1.08997 * 115.54993 * 158.53942 * 26 2 1 47 47 H 1.09008 * 117.49313 * 0.02562 * 27 26 2 48 48 H 1.08997 * 117.49651 * 145.01941 * 27 26 2 49 49 H 1.09000 * 117.49247 * 214.97798 * 28 26 2 50 50 H 1.08993 * 117.49974 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6497 3.5636 -0.0009 7 6 5.5778 2.6283 -0.0013 8 7 6.2360 3.7681 -0.0014 9 14 6.5118 1.0105 -0.0012 10 1 6.7592 0.5817 -1.4013 11 1 7.8094 1.1881 0.6987 12 1 5.7092 -0.0243 0.6989 13 7 2.0183 -0.6906 1.1962 14 6 1.6224 -0.2831 2.4184 15 8 0.9345 0.7123 2.5338 16 6 2.0249 -1.0470 3.6186 17 6 2.8138 -2.1893 3.4864 18 6 3.1850 -2.8973 4.6104 19 6 2.7741 -2.4760 5.8609 20 6 1.9880 -1.3413 6.0013 21 6 1.6141 -0.6244 4.8870 22 6 0.7678 0.6236 4.9978 23 6 0.0996 0.6674 6.3732 24 8 1.0954 0.4246 7.3734 25 6 1.5613 -0.9243 7.3849 26 6 2.0400 -0.7213 -1.2493 27 6 1.0281 -1.0132 -2.3591 28 6 1.5561 -2.1535 -1.4851 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.9900 0.6023 -0.0006 35 1 7.2060 3.7681 -0.0018 36 1 2.6265 -1.4411 1.1085 37 1 3.1325 -2.5183 2.5082 38 1 3.7971 -3.7818 4.5133 39 1 3.0679 -3.0350 6.7371 40 1 0.0015 0.6174 4.2227 41 1 1.4002 1.5027 4.8740 42 1 -0.6719 -0.1004 6.4304 43 1 -0.3477 1.6487 6.5321 44 1 2.4094 -1.0073 8.0646 45 1 0.7601 -1.5800 7.7259 46 1 3.0596 -0.4788 -1.5488 47 1 -0.0009 -0.6909 -2.1994 48 1 1.3821 -0.9630 -3.3888 49 1 2.2573 -2.8530 -1.9402 50 1 0.8748 -2.5820 -0.7501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269626066.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:22 Heat of formation + Delta-G solvation = -26.071967 kcal Electronic energy + Delta-G solvation = -31583.786043 eV Core-core repulsion = 27576.546087 eV Total energy + Delta-G solvation = -4007.239956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95880 -40.82931 -39.10687 -38.28481 -36.54828 -35.22663 -33.81706 -33.62120 -32.77283 -31.50388 -30.28711 -27.83487 -26.57989 -25.71917 -24.67176 -24.29275 -23.83416 -23.14599 -21.52783 -21.04471 -20.29299 -19.69196 -18.84112 -17.57080 -17.32423 -16.93728 -16.76494 -16.69445 -16.47995 -16.27935 -16.16541 -15.62741 -15.42199 -15.11549 -14.85070 -14.67746 -14.37692 -14.24156 -13.98970 -13.87534 -13.63650 -13.38303 -13.33770 -13.17914 -12.91086 -12.88027 -12.69676 -12.48050 -12.34757 -12.25700 -12.03835 -11.98804 -11.86979 -11.62237 -11.27402 -11.13078 -11.00100 -10.86772 -10.25543 -10.10442 -9.75885 -9.64356 -9.29123 -8.06227 -5.38725 -0.16535 0.28221 1.27322 1.34734 1.41547 1.86949 2.07191 2.43373 2.77209 2.90853 2.99033 3.24314 3.49239 3.61218 3.62939 3.68179 3.72574 3.85489 3.92737 4.03343 4.11103 4.15705 4.19768 4.30729 4.34637 4.38420 4.48885 4.52950 4.58187 4.75084 4.77855 4.78424 4.81425 4.83143 4.85951 4.93555 4.94601 5.01307 5.06691 5.11455 5.25402 5.30476 5.31040 5.37204 5.40543 5.51781 5.63203 5.71290 5.88111 6.11368 6.16885 6.59821 7.03938 7.27499 7.78675 8.02174 9.16133 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.004180 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.566965 B = 6697.500685 C = 7720.847964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.209 3.791 3 C 0.149 3.851 4 N -0.744 5.744 5 C -0.233 4.233 6 H 0.045 0.955 7 C -0.066 4.066 8 N -0.986 5.986 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.296 1.296 12 H -0.252 1.252 13 N -0.703 5.703 14 C 0.554 3.446 15 O -0.554 6.554 16 C -0.157 4.157 17 C -0.088 4.088 18 C -0.127 4.127 19 C -0.081 4.081 20 C -0.143 4.143 21 C -0.039 4.039 22 C -0.114 4.114 23 C 0.060 3.940 24 O -0.398 6.398 25 C 0.099 3.901 26 C -0.184 4.184 27 C -0.162 4.162 28 C -0.153 4.153 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.366 0.634 35 H 0.258 0.742 36 H 0.405 0.595 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 -23.173 9.124 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.124 3.876 3 C 0.022 3.978 4 N -0.389 5.389 5 C -0.364 4.364 6 H 0.063 0.937 7 C -0.257 4.257 8 N -0.637 5.637 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.222 1.222 12 H -0.176 1.176 13 N -0.355 5.355 14 C 0.343 3.657 15 O -0.434 6.434 16 C -0.160 4.160 17 C -0.107 4.107 18 C -0.145 4.145 19 C -0.099 4.099 20 C -0.144 4.144 21 C -0.040 4.040 22 C -0.150 4.150 23 C -0.016 4.016 24 O -0.316 6.316 25 C 0.023 3.977 26 C -0.203 4.203 27 C -0.199 4.199 28 C -0.190 4.190 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.242 0.758 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.182 0.818 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.129 0.871 48 H 0.120 0.880 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.636 -22.102 9.300 27.585 hybrid contribution 1.383 -0.103 -0.576 1.501 sum -12.254 -22.205 8.724 26.820 Atomic orbital electron populations 1.22190 0.92564 1.03149 1.03309 1.19892 0.94628 0.89921 0.83183 1.21088 0.82998 0.95648 0.98041 1.42448 1.02167 1.03577 1.90759 1.19002 0.89894 0.86277 1.41260 0.93683 1.25535 0.97004 1.00508 1.02608 1.69905 1.07103 1.26805 1.59838 0.85379 0.77804 0.80051 0.78428 1.19586 1.22228 1.17633 1.45869 1.49315 1.35532 1.04765 1.18535 0.79576 0.83826 0.83726 1.90650 1.40108 1.26337 1.86318 1.19975 1.04311 0.98809 0.92870 1.21579 0.95051 0.93139 1.00935 1.21433 1.00433 1.01079 0.91527 1.21589 0.94497 0.94472 0.99309 1.20532 1.00606 0.97252 0.95995 1.19831 0.96471 0.95868 0.91827 1.21369 0.99812 0.94435 0.99432 1.22803 0.89911 1.03137 0.85747 1.88040 1.58515 1.29272 1.55820 1.21679 1.00807 0.83191 0.91982 1.22318 1.00131 1.00647 0.97208 1.23199 0.99030 1.02166 0.95519 1.23068 1.03408 0.89736 1.02742 0.92180 0.90345 0.90326 0.95705 0.96060 0.80025 0.93345 0.75837 0.83972 0.81894 0.81781 0.88035 0.92749 0.90972 0.87551 0.85841 0.89351 0.89015 0.87073 0.88024 0.87256 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 6.98 71.98 0.50 -3.57 16 2 C 0.21 6.45 0.54 3.60 0.00 6.45 16 3 C 0.15 6.43 5.03 86.38 0.43 6.87 16 4 N -0.74 -36.96 4.84 -343.45 -1.66 -38.62 16 5 C -0.23 -14.29 10.47 84.03 0.88 -13.41 16 6 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 8 N -0.99 -65.97 13.97 21.65 0.30 -65.66 16 9 Si 0.96 46.60 27.74 68.60 1.90 48.50 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 13 N -0.70 -20.72 4.67 -425.74 -1.99 -22.71 16 14 C 0.55 18.59 7.14 86.79 0.62 19.21 16 15 O -0.55 -21.80 9.40 -3.87 -0.04 -21.83 16 16 C -0.16 -4.53 5.88 -20.05 -0.12 -4.65 16 17 C -0.09 -1.92 9.53 22.49 0.21 -1.71 16 18 C -0.13 -2.10 10.03 22.19 0.22 -1.88 16 19 C -0.08 -1.31 9.66 22.39 0.22 -1.09 16 20 C -0.14 -3.14 5.80 -19.88 -0.12 -3.25 16 21 C -0.04 -1.11 5.82 -19.45 -0.11 -1.22 16 22 C -0.11 -3.42 4.57 30.00 0.14 -3.28 16 23 C 0.06 1.40 6.84 71.97 0.49 1.89 16 24 O -0.40 -9.84 10.80 -148.98 -1.61 -11.45 16 25 C 0.10 1.79 6.66 71.23 0.47 2.26 16 26 C -0.18 -4.80 4.84 -10.79 -0.05 -4.85 16 27 C -0.16 -3.23 9.64 30.62 0.30 -2.93 16 28 C -0.15 -2.68 9.82 30.62 0.30 -2.37 16 29 H 0.06 1.89 6.03 -2.39 -0.01 1.87 16 30 H 0.08 1.88 6.78 -2.39 -0.02 1.87 16 31 H 0.08 1.67 6.99 -2.39 -0.02 1.65 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.02 1.06 6.32 -2.39 -0.02 1.04 16 34 H 0.37 16.85 4.48 -92.71 -0.42 16.44 16 35 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 36 H 0.40 9.89 6.52 -92.71 -0.60 9.29 16 37 H 0.14 2.46 6.41 -2.91 -0.02 2.44 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.10 3.26 6.02 -2.39 -0.01 3.24 16 41 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 42 H 0.07 1.36 8.07 -2.39 -0.02 1.34 16 43 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 2.88 7.08 -2.39 -0.02 2.86 16 47 H 0.11 2.01 5.88 -2.38 -0.01 2.00 16 48 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.11 1.63 7.34 -2.39 -0.02 1.62 16 Total: -1.00 -81.78 384.26 1.67 -80.11 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.10 Total: 42.78 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.86 Total: -11.12 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -3.35 Total: -127.00 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.65 Total: -33.28 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -81.78 1.67 -80.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626066.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.037 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds