Wall clock time and date at job start Wed Apr 1 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47000 * 2 1 4 4 H 1.08998 * 109.47050 * 182.40620 * 3 2 1 5 5 S 1.81403 * 109.46834 * 62.41137 * 3 2 1 6 6 C 1.81396 * 103.00383 * 67.09286 * 5 3 2 7 7 C 1.50694 * 109.47674 * 302.40677 * 3 2 1 8 8 O 1.21282 * 119.99705 * 99.99589 * 7 3 2 9 9 N 1.34771 * 120.00464 * 280.00402 * 7 3 2 10 10 C 1.46934 * 120.62528 * 359.71453 * 9 7 3 11 11 C 1.52761 * 109.00707 * 233.58642 * 10 9 7 12 12 C 1.53050 * 109.38130 * 305.58961 * 11 10 9 13 13 O 1.42908 * 109.45803 * 181.26132 * 12 11 10 14 14 C 1.42896 * 114.00142 * 89.93069 * 13 12 11 15 15 C 1.52997 * 109.47472 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47337 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47156 * 179.97438 * 16 15 14 18 18 C 1.36942 * 120.00164 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99526 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99836 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00640 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99836 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47320 * 89.99883 * 22 20 18 24 24 H 1.48499 * 109.47190 * 210.00371 * 22 20 18 25 25 H 1.48509 * 109.46988 * 329.99857 * 22 20 18 26 26 C 1.53037 * 109.53853 * 61.24079 * 12 11 10 27 27 C 1.46917 * 120.63540 * 179.97438 * 9 7 3 28 28 H 1.09002 * 109.47639 * 65.10959 * 1 2 3 29 29 H 1.09003 * 109.47452 * 185.11045 * 1 2 3 30 30 H 1.09003 * 109.47083 * 305.10762 * 1 2 3 31 31 H 1.09007 * 109.46925 * 240.00231 * 2 1 3 32 32 H 1.08999 * 109.47255 * 120.00611 * 2 1 3 33 33 H 1.08998 * 109.47302 * 174.69032 * 6 5 3 34 34 H 1.09003 * 109.47101 * 294.69590 * 6 5 3 35 35 H 1.09007 * 109.47209 * 54.69139 * 6 5 3 36 36 H 1.08993 * 109.58700 * 353.41832 * 10 9 7 37 37 H 1.09001 * 109.58303 * 113.85029 * 10 9 7 38 38 H 1.08997 * 109.56606 * 185.55721 * 11 10 9 39 39 H 1.08996 * 109.36152 * 65.49820 * 11 10 9 40 40 H 1.08992 * 109.44535 * 301.22276 * 12 11 10 41 41 H 1.09005 * 109.47333 * 300.00268 * 14 13 12 42 42 H 1.08995 * 109.47101 * 59.99595 * 14 13 12 43 43 H 1.09005 * 109.47015 * 300.00406 * 15 14 13 44 44 H 1.09004 * 109.46803 * 59.99856 * 15 14 13 45 45 H 1.08996 * 109.47436 * 300.00320 * 16 15 14 46 46 H 1.09004 * 109.47223 * 60.00197 * 16 15 14 47 47 H 0.97000 * 120.00253 * 0.02562 * 17 16 15 48 48 H 0.97003 * 120.00588 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.49920 * 178.67881 * 26 12 11 50 50 H 1.09004 * 109.52062 * 58.60343 * 26 12 11 51 51 H 1.09005 * 109.58977 * 246.15212 * 27 9 7 52 52 H 1.09007 * 109.58830 * 6.43371 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1290 1.4428 -0.0431 5 16 1.4947 2.2765 1.5158 6 6 2.4161 1.4071 2.8141 7 6 1.4895 2.1700 -1.1995 8 8 0.5327 2.9050 -1.0764 9 7 2.0604 2.0038 -2.4089 10 6 3.2238 1.1214 -2.5726 11 6 4.3473 1.9006 -3.2540 12 6 3.8268 2.5042 -4.5606 13 8 4.8845 3.2090 -5.2139 14 6 5.6490 2.4052 -6.1148 15 6 6.7473 3.2581 -6.7528 16 6 7.5661 2.3974 -7.7168 17 7 8.6174 3.2142 -8.3282 18 6 9.4808 2.6547 -9.2320 19 1 9.3864 1.6113 -9.4943 20 6 10.4771 3.4286 -9.8108 21 7 10.5925 4.7000 -9.4908 22 14 11.6545 2.6655 -11.0442 23 1 11.0960 2.8045 -12.4130 24 1 12.9655 3.3591 -10.9716 25 1 11.8379 1.2260 -10.7282 26 6 2.6809 3.4719 -4.2566 27 6 1.5348 2.7057 -3.5877 28 1 -0.3634 0.4325 -0.9322 29 1 -0.3634 -1.0236 0.0915 30 1 -0.3633 0.5910 0.8407 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.2362 1.8914 3.7739 34 1 2.0843 0.3699 2.8626 35 1 3.4816 1.4374 2.5859 36 1 3.5610 0.7762 -1.5953 37 1 2.9496 0.2660 -3.1900 38 1 5.1787 1.2294 -3.4691 39 1 4.6852 2.6992 -2.5936 40 1 3.4662 1.7069 -5.2103 41 1 6.1029 1.5784 -5.5683 42 1 4.9961 2.0110 -6.8934 43 1 6.2938 4.0852 -7.2992 44 1 7.4001 3.6519 -5.9738 45 1 8.0196 1.5706 -7.1701 46 1 6.9135 2.0032 -8.4959 47 1 8.7019 4.1514 -8.0929 48 1 11.2890 5.2407 -9.8950 49 1 2.3263 3.9191 -5.1853 50 1 3.0343 4.2560 -3.5870 51 1 1.1203 1.9819 -4.2895 52 1 0.7561 3.4038 -3.2802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276159197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:13 Heat of formation + Delta-G solvation = -80.273364 kcal Electronic energy + Delta-G solvation = -27908.313442 eV Core-core repulsion = 24034.167089 eV Total energy + Delta-G solvation = -3874.146353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85810 -38.84454 -36.84008 -35.38341 -35.10990 -32.77430 -31.80909 -31.57158 -29.60195 -29.37225 -28.39492 -25.64193 -24.71284 -23.76977 -22.85028 -22.44052 -21.32678 -20.80803 -19.59884 -17.82661 -17.21173 -17.03711 -16.69210 -16.22775 -15.79646 -15.69775 -15.27860 -14.94413 -14.72464 -14.60753 -14.37895 -14.17292 -13.99377 -13.70882 -13.53189 -13.28711 -13.21262 -13.11083 -12.88465 -12.73934 -12.44400 -12.35368 -12.17554 -11.90907 -11.66220 -11.60828 -11.48780 -11.26505 -10.97481 -10.89207 -10.73760 -10.62974 -10.57942 -10.28442 -10.15939 -10.06404 -9.72100 -9.52417 -9.16233 -8.88430 -8.04631 -6.93626 -5.76872 -3.06288 0.99014 2.02827 2.20127 2.50118 3.43114 3.46210 3.49567 3.51282 3.82866 4.15511 4.16180 4.36252 4.45275 4.55620 4.59400 4.62652 4.66969 4.70745 4.76560 4.81989 4.91563 5.00482 5.04798 5.09296 5.16185 5.23493 5.26135 5.29354 5.40097 5.44099 5.46095 5.54822 5.56058 5.57586 5.60141 5.76147 5.87298 5.91598 5.99251 6.04163 6.08508 6.25958 6.34963 6.80991 6.84712 6.84932 7.23207 7.67679 7.68612 8.41755 9.52708 10.10644 10.45364 11.45996 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025014 B = 0.001538 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.101010 B =18200.022417 C =18484.889108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C -0.097 4.097 4 H 0.109 0.891 5 S -0.181 6.181 6 C -0.141 4.141 7 C 0.541 3.459 8 O -0.517 6.517 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.160 4.160 12 C 0.092 3.908 13 O -0.379 6.379 14 C 0.068 3.932 15 C -0.125 4.125 16 C 0.157 3.843 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.132 4.132 27 C 0.116 3.884 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.882 -11.352 23.698 34.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.228 4.228 4 H 0.127 0.873 5 S 0.045 5.955 6 C -0.310 4.310 7 C 0.327 3.673 8 O -0.392 6.392 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.199 4.199 12 C 0.033 3.967 13 O -0.298 6.298 14 C -0.009 4.009 15 C -0.163 4.163 16 C 0.029 3.971 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.170 4.170 27 C -0.006 4.006 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.986 -10.032 23.822 34.590 hybrid contribution 1.884 -1.445 -0.858 2.524 sum -21.102 -11.476 22.965 33.232 Atomic orbital electron populations 1.21911 0.93872 1.02096 1.03739 1.21702 0.98341 0.91980 1.03221 1.23551 1.04126 0.99525 0.95635 0.87316 1.87410 1.60445 1.48824 0.98823 1.23569 1.02840 1.03770 1.00820 1.19559 0.83294 0.81303 0.83107 1.90742 1.26755 1.37472 1.84280 1.48042 1.31622 1.46730 1.07868 1.21754 0.85353 0.92674 1.01837 1.22401 0.98115 1.01097 0.98260 1.21966 0.87969 0.94264 0.92482 1.87961 1.45315 1.37392 1.59151 1.22536 0.93160 0.93868 0.91316 1.21671 0.96061 0.99287 0.99251 1.20507 0.90145 0.93313 0.93119 1.42340 1.34287 1.10457 1.50657 1.19235 1.07396 0.94701 1.15974 0.91143 1.24764 0.99626 0.95860 1.00783 1.69664 1.35752 1.05794 1.46901 0.86166 0.80502 0.78107 0.81259 1.21678 1.21723 1.20768 1.22001 0.94353 0.98644 1.02021 1.21643 0.96557 0.96504 0.85871 0.92589 0.92338 0.90397 0.90601 0.90638 0.87706 0.90369 0.90434 0.89476 0.90669 0.89930 0.90378 0.92004 0.93473 0.93345 0.91151 0.91198 0.96387 0.96362 0.78170 0.93463 0.89568 0.90453 0.91042 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.38 37.16 0.35 -0.72 16 2 C -0.11 -0.60 5.45 -26.73 -0.15 -0.74 16 3 C -0.10 -0.69 2.07 -27.89 -0.06 -0.75 16 4 H 0.11 0.61 6.53 -51.92 -0.34 0.27 16 5 S -0.18 -1.55 19.60 -107.50 -2.11 -3.65 16 6 C -0.14 -0.66 10.42 101.05 1.05 0.39 16 7 C 0.54 5.22 5.65 -10.99 -0.06 5.16 16 8 O -0.52 -6.86 15.29 5.56 0.08 -6.77 16 9 N -0.61 -4.83 2.98 -173.01 -0.52 -5.34 16 10 C 0.11 0.62 5.61 -3.93 -0.02 0.59 16 11 C -0.16 -1.23 5.68 -26.83 -0.15 -1.38 16 12 C 0.09 0.85 2.57 -26.69 -0.07 0.79 16 13 O -0.38 -4.92 9.99 -35.23 -0.35 -5.27 16 14 C 0.07 0.89 5.75 37.16 0.21 1.10 16 15 C -0.12 -2.08 5.70 -26.74 -0.15 -2.24 16 16 C 0.16 3.17 6.26 -4.05 -0.03 3.14 16 17 N -0.73 -19.04 5.60 -59.91 -0.34 -19.38 16 18 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C -0.13 -1.16 5.73 -26.59 -0.15 -1.31 16 27 C 0.12 0.93 6.44 -3.70 -0.02 0.90 16 28 H 0.06 0.47 7.25 -51.93 -0.38 0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.61 6.84 -51.93 -0.36 0.26 16 31 H 0.08 0.32 7.15 -51.93 -0.37 -0.05 16 32 H 0.08 0.30 7.09 -51.93 -0.37 -0.07 16 33 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.08 0.28 7.39 -51.92 -0.38 -0.10 16 35 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.09 0.36 5.12 -51.93 -0.27 0.10 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.59 7.84 -51.93 -0.41 0.19 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 41 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 42 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.10 0.92 7.00 -51.93 -0.36 0.55 16 LS Contribution 417.02 15.07 6.28 6.28 Total: -1.00 -34.16 417.02 -10.13 -44.29 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -9.39 Total: 2.83 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.51 Total: -2.60 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.13 Total: -52.56 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.27 Total: -12.04 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.11 Total: -3.65 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.16 -10.13 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276159197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.987 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds