Wall clock time and date at job start Wed Apr 1 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00230 * 2 1 4 4 H 1.08998 * 110.67311 * 357.03523 * 3 2 1 5 5 O 1.44415 * 110.65450 * 234.06802 * 3 2 1 6 6 C 1.43739 * 107.00337 * 201.48171 * 5 3 2 7 7 C 1.54100 * 107.29347 * 26.48485 * 6 5 3 8 8 C 1.54813 * 104.18826 * 357.97202 * 7 6 5 9 9 H 1.09005 * 110.90750 * 97.35119 * 8 7 6 10 10 C 1.50697 * 110.90871 * 220.92172 * 8 7 6 11 11 O 1.21283 * 120.00068 * 103.00972 * 10 8 7 12 12 N 1.34783 * 119.99884 * 283.01034 * 10 8 7 13 13 C 1.46495 * 120.00083 * 184.73161 * 12 10 8 14 14 C 1.53003 * 109.47082 * 270.00394 * 13 12 10 15 15 N 1.46508 * 109.46917 * 179.97438 * 14 13 12 16 16 C 1.36933 * 119.99426 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00889 * 0.02562 * 16 15 14 18 18 C 1.38820 * 119.99636 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00014 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47080 * 60.00013 * 20 18 16 22 22 H 1.48496 * 109.47448 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47074 * 300.00382 * 20 18 16 24 24 C 1.46494 * 119.99712 * 4.73462 * 12 10 8 25 25 C 1.50708 * 109.47141 * 263.18141 * 24 12 10 26 26 C 1.38223 * 120.00041 * 97.68557 * 25 24 12 27 27 C 1.38235 * 120.00172 * 180.02562 * 26 25 24 28 28 C 1.38240 * 119.99671 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99938 * 0.26056 * 28 27 26 30 30 C 1.38231 * 120.00053 * 359.46045 * 29 28 27 31 31 H 1.07998 * 120.00107 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99636 * 0.02562 * 1 2 3 33 33 H 1.08004 * 120.00124 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.87632 * 267.05960 * 6 5 3 35 35 H 1.09006 * 109.88117 * 145.91146 * 6 5 3 36 36 H 1.08998 * 110.48864 * 239.29466 * 7 6 5 37 37 H 1.08997 * 110.59971 * 116.70565 * 7 6 5 38 38 H 1.09002 * 109.47013 * 29.99794 * 13 12 10 39 39 H 1.09000 * 109.47399 * 150.00019 * 13 12 10 40 40 H 1.09002 * 109.46707 * 299.99588 * 14 13 12 41 41 H 1.09000 * 109.47309 * 59.99571 * 14 13 12 42 42 H 0.96996 * 119.99943 * 359.97438 * 15 14 13 43 43 H 0.97001 * 120.00208 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47112 * 143.18637 * 24 12 10 45 45 H 1.09003 * 109.47854 * 23.18226 * 24 12 10 46 46 H 1.08003 * 120.00597 * 359.97438 * 26 25 24 47 47 H 1.08005 * 120.00463 * 179.97438 * 27 26 25 48 48 H 1.08003 * 119.99496 * 179.97438 * 28 27 26 49 49 H 1.08005 * 119.99713 * 179.72348 * 29 28 27 50 50 H 1.07999 * 119.99877 * 180.27753 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3740 2.1476 -0.0527 5 8 3.0050 1.3497 -1.0942 6 6 4.0012 2.3278 -0.7520 7 6 4.0588 2.4041 0.7861 8 6 2.9646 1.4151 1.2564 9 1 3.3978 0.4476 1.5103 10 6 2.1948 1.9795 2.4225 11 8 1.0860 2.4402 2.2512 12 7 2.7384 1.9722 3.6558 13 6 1.9518 2.4247 4.8058 14 6 2.1557 3.9282 5.0033 15 7 1.3685 4.3808 6.1530 16 6 1.3940 5.6987 6.5240 17 1 1.9941 6.4046 5.9689 18 6 0.6477 6.1278 7.6130 19 7 -0.0840 5.2678 8.2893 20 14 0.6819 7.9257 8.1187 21 1 0.1928 8.7652 6.9955 22 1 -0.1925 8.1237 9.3025 23 1 2.0729 8.3174 8.4603 24 6 4.1161 1.5118 3.8462 25 6 4.1081 0.0671 4.2753 26 6 4.3087 -0.9323 3.3417 27 6 4.3009 -2.2574 3.7352 28 6 4.0931 -2.5830 5.0625 29 6 3.8877 -1.5837 5.9953 30 6 3.9012 -0.2584 5.6028 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5399 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.7230 3.2990 -1.1611 35 1 4.9711 2.0220 -1.1445 36 1 3.8319 3.4144 1.1267 37 1 5.0377 2.0910 1.1492 38 1 0.8960 2.2219 4.6262 39 1 2.2769 1.8933 5.7002 40 1 3.2115 4.1311 5.1829 41 1 1.8306 4.4596 4.1089 42 1 0.8293 3.7470 6.6514 43 1 -0.6052 5.5674 9.0505 44 1 4.5983 2.1163 4.6144 45 1 4.6647 1.6095 2.9094 46 1 4.4706 -0.6780 2.3046 47 1 4.4571 -3.0384 3.0057 48 1 4.0866 -3.6184 5.3698 49 1 3.7209 -1.8384 7.0316 50 1 3.7452 0.5225 6.3324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279318979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:52 Heat of formation + Delta-G solvation = -12.876735 kcal Electronic energy + Delta-G solvation = -30799.902071 eV Core-core repulsion = 26793.234303 eV Total energy + Delta-G solvation = -4006.667768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.88751 -39.43419 -38.58065 -36.06255 -34.59918 -33.99543 -32.70159 -31.87736 -31.06325 -30.92080 -28.88074 -27.88050 -26.20496 -24.39139 -23.07221 -22.73803 -22.36441 -21.66367 -21.33242 -20.21737 -19.11371 -17.61473 -17.23513 -16.80852 -16.56269 -16.04589 -15.94976 -15.63667 -15.10765 -15.06300 -14.70111 -14.38955 -13.97475 -13.86540 -13.68560 -13.56729 -13.39580 -13.32658 -13.20400 -13.00960 -12.71762 -12.46190 -12.18703 -12.12079 -11.67947 -11.48726 -11.27496 -11.24455 -11.15714 -11.02014 -10.93796 -10.89476 -10.65661 -10.14907 -9.98295 -9.79276 -9.67464 -9.51878 -9.08743 -8.99222 -8.86564 -8.57957 -6.93292 -5.75830 -3.05103 1.10423 1.23152 2.03656 2.61259 2.95654 3.44947 3.49190 3.50438 3.62546 3.79902 4.22103 4.33802 4.48031 4.51487 4.57919 4.62353 4.75419 4.78460 4.84228 4.91345 4.97544 5.01432 5.09298 5.17800 5.28870 5.38963 5.42882 5.46473 5.50610 5.52438 5.61401 5.64139 5.71115 5.78712 5.80064 5.83666 5.86294 6.01486 6.10758 6.27144 6.34704 6.38614 6.44049 6.52235 6.53957 6.70576 6.72538 6.81433 6.89547 7.42972 7.69835 8.21192 8.42539 9.53464 10.09462 10.44556 11.46981 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.003348 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.959000 B = 8362.338606 C =10271.586156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.158 4.158 3 C 0.124 3.876 4 H 0.092 0.908 5 O -0.370 6.370 6 C 0.049 3.951 7 C -0.148 4.148 8 C -0.142 4.142 9 H 0.111 0.889 10 C 0.526 3.474 11 O -0.523 6.523 12 N -0.598 5.598 13 C 0.109 3.891 14 C 0.144 3.856 15 N -0.730 5.730 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.141 3.859 25 C -0.105 4.105 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.118 4.118 30 C -0.100 4.100 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.017 0.983 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.403 -16.917 -14.759 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.067 3.933 4 H 0.109 0.891 5 O -0.289 6.289 6 C -0.027 4.027 7 C -0.186 4.186 8 C -0.164 4.164 9 H 0.129 0.871 10 C 0.313 3.687 11 O -0.399 6.399 12 N -0.330 5.330 13 C -0.013 4.013 14 C 0.015 3.985 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.018 3.982 25 C -0.106 4.106 26 C -0.130 4.130 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.136 4.136 30 C -0.119 4.119 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.814 -16.582 -15.029 25.306 hybrid contribution -0.050 0.795 0.895 1.199 sum 11.764 -15.786 -14.134 24.236 Atomic orbital electron populations 1.23955 0.95769 1.02478 0.97144 1.22560 0.95741 0.96803 1.02526 1.22053 0.90628 0.97294 0.83372 0.89066 1.88913 1.38490 1.60328 1.41162 1.23131 0.92835 0.93086 0.93697 1.23014 0.98713 1.00444 0.96457 1.23022 0.97184 1.01178 0.94998 0.87128 1.20113 0.86449 0.78691 0.83451 1.90740 1.20005 1.45279 1.83852 1.47851 1.13801 1.63926 1.07460 1.21729 0.96613 0.96286 0.86716 1.20897 0.94809 0.91130 0.91639 1.42193 1.54924 1.07940 1.32394 1.19151 1.22908 0.85384 1.09571 0.91290 1.24736 0.99777 0.97825 0.98505 1.69648 1.33264 1.33251 1.22029 0.86252 0.77270 0.84817 0.77756 1.21228 1.21631 1.21267 1.20647 0.83576 0.90879 1.03106 1.20266 1.00624 0.95733 0.93992 1.21073 1.00381 0.92782 0.98811 1.21114 1.00493 0.96181 0.96179 1.21180 0.99796 0.99308 0.93431 1.21206 0.99700 0.92880 0.99797 1.21194 0.98272 0.96786 0.95609 0.87902 0.87846 0.86937 0.91873 0.89430 0.89608 0.89389 0.89796 0.90522 0.96509 0.95874 0.78286 0.93433 0.88821 0.89228 0.86202 0.86133 0.86198 0.85881 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 14.33 29.01 0.42 -1.32 16 2 C -0.16 -1.79 9.24 -36.03 -0.33 -2.13 16 3 C 0.12 1.50 2.88 -26.83 -0.08 1.42 16 4 H 0.09 1.28 7.01 -51.93 -0.36 0.92 16 5 O -0.37 -4.32 11.21 -35.23 -0.39 -4.71 16 6 C 0.05 0.43 7.70 37.73 0.29 0.73 16 7 C -0.15 -1.31 5.67 -25.20 -0.14 -1.45 16 8 C -0.14 -1.56 1.92 -89.76 -0.17 -1.74 16 9 H 0.11 1.06 4.77 -51.93 -0.25 0.81 16 10 C 0.53 7.72 6.86 -10.98 -0.08 7.64 16 11 O -0.52 -9.83 15.32 5.56 0.09 -9.75 16 12 N -0.60 -8.26 2.46 -175.06 -0.43 -8.70 16 13 C 0.11 1.86 5.50 -4.04 -0.02 1.83 16 14 C 0.14 3.01 6.58 -4.04 -0.03 2.98 16 15 N -0.73 -18.96 5.60 -59.90 -0.34 -19.30 16 16 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 20 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.14 1.47 5.29 -5.19 -0.03 1.44 16 25 C -0.10 -1.09 5.44 -104.62 -0.57 -1.65 16 26 C -0.11 -1.03 9.00 -39.59 -0.36 -1.39 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 29 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 30 C -0.10 -1.09 9.20 -39.58 -0.36 -1.45 16 31 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.10 1.23 7.87 -52.49 -0.41 0.82 16 33 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 37 H 0.09 0.55 6.94 -51.93 -0.36 0.19 16 38 H 0.08 1.62 7.49 -51.93 -0.39 1.23 16 39 H 0.08 1.21 6.57 -51.93 -0.34 0.87 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 44 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 45 H 0.09 0.73 4.55 -51.93 -0.24 0.50 16 46 H 0.12 0.90 6.05 -52.48 -0.32 0.59 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 48 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 49 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 50 H 0.13 1.40 7.15 -52.49 -0.38 1.02 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -34.28 404.81 -9.71 -44.00 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.54 Total: 9.48 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.90 Total: -7.01 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.04 Total: -55.77 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.31 Total: -14.46 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.28 -9.71 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279318979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.120 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds