Wall clock time and date at job start Wed Apr 1 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00230 * 2 1 4 4 H 1.08998 * 110.67311 * 357.03523 * 3 2 1 5 5 O 1.44415 * 110.65450 * 234.06802 * 3 2 1 6 6 C 1.43739 * 107.00337 * 201.48171 * 5 3 2 7 7 C 1.54100 * 107.29347 * 26.48485 * 6 5 3 8 8 C 1.54813 * 104.18826 * 357.97202 * 7 6 5 9 9 H 1.09005 * 110.90750 * 97.35119 * 8 7 6 10 10 C 1.50697 * 110.90871 * 220.92172 * 8 7 6 11 11 O 1.21283 * 120.00068 * 103.00972 * 10 8 7 12 12 N 1.34783 * 119.99884 * 283.01034 * 10 8 7 13 13 C 1.46495 * 120.00083 * 184.73161 * 12 10 8 14 14 C 1.53003 * 109.47082 * 270.00394 * 13 12 10 15 15 N 1.46508 * 109.46917 * 179.97438 * 14 13 12 16 16 C 1.36933 * 119.99426 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00889 * 0.02562 * 16 15 14 18 18 C 1.38820 * 119.99636 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00014 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47080 * 60.00013 * 20 18 16 22 22 H 1.48496 * 109.47448 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47074 * 300.00382 * 20 18 16 24 24 C 1.46494 * 119.99712 * 4.73462 * 12 10 8 25 25 C 1.50708 * 109.47141 * 263.18141 * 24 12 10 26 26 C 1.38223 * 120.00041 * 97.68557 * 25 24 12 27 27 C 1.38235 * 120.00172 * 180.02562 * 26 25 24 28 28 C 1.38240 * 119.99671 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99938 * 0.26056 * 28 27 26 30 30 C 1.38231 * 120.00053 * 359.46045 * 29 28 27 31 31 H 1.07998 * 120.00107 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99636 * 0.02562 * 1 2 3 33 33 H 1.08004 * 120.00124 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.87632 * 267.05960 * 6 5 3 35 35 H 1.09006 * 109.88117 * 145.91146 * 6 5 3 36 36 H 1.08998 * 110.48864 * 239.29466 * 7 6 5 37 37 H 1.08997 * 110.59971 * 116.70565 * 7 6 5 38 38 H 1.09002 * 109.47013 * 29.99794 * 13 12 10 39 39 H 1.09000 * 109.47399 * 150.00019 * 13 12 10 40 40 H 1.09002 * 109.46707 * 299.99588 * 14 13 12 41 41 H 1.09000 * 109.47309 * 59.99571 * 14 13 12 42 42 H 0.96996 * 119.99943 * 359.97438 * 15 14 13 43 43 H 0.97001 * 120.00208 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47112 * 143.18637 * 24 12 10 45 45 H 1.09003 * 109.47854 * 23.18226 * 24 12 10 46 46 H 1.08003 * 120.00597 * 359.97438 * 26 25 24 47 47 H 1.08005 * 120.00463 * 179.97438 * 27 26 25 48 48 H 1.08003 * 119.99496 * 179.97438 * 28 27 26 49 49 H 1.08005 * 119.99713 * 179.72348 * 29 28 27 50 50 H 1.07999 * 119.99877 * 180.27753 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3740 2.1476 -0.0527 5 8 3.0050 1.3497 -1.0942 6 6 4.0012 2.3278 -0.7520 7 6 4.0588 2.4041 0.7861 8 6 2.9646 1.4151 1.2564 9 1 3.3978 0.4476 1.5103 10 6 2.1948 1.9795 2.4225 11 8 1.0860 2.4402 2.2512 12 7 2.7384 1.9722 3.6558 13 6 1.9518 2.4247 4.8058 14 6 2.1557 3.9282 5.0033 15 7 1.3685 4.3808 6.1530 16 6 1.3940 5.6987 6.5240 17 1 1.9941 6.4046 5.9689 18 6 0.6477 6.1278 7.6130 19 7 -0.0840 5.2678 8.2893 20 14 0.6819 7.9257 8.1187 21 1 0.1928 8.7652 6.9955 22 1 -0.1925 8.1237 9.3025 23 1 2.0729 8.3174 8.4603 24 6 4.1161 1.5118 3.8462 25 6 4.1081 0.0671 4.2753 26 6 4.3087 -0.9323 3.3417 27 6 4.3009 -2.2574 3.7352 28 6 4.0931 -2.5830 5.0625 29 6 3.8877 -1.5837 5.9953 30 6 3.9012 -0.2584 5.6028 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5399 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.7230 3.2990 -1.1611 35 1 4.9711 2.0220 -1.1445 36 1 3.8319 3.4144 1.1267 37 1 5.0377 2.0910 1.1492 38 1 0.8960 2.2219 4.6262 39 1 2.2769 1.8933 5.7002 40 1 3.2115 4.1311 5.1829 41 1 1.8306 4.4596 4.1089 42 1 0.8293 3.7470 6.6514 43 1 -0.6052 5.5674 9.0505 44 1 4.5983 2.1163 4.6144 45 1 4.6647 1.6095 2.9094 46 1 4.4706 -0.6780 2.3046 47 1 4.4571 -3.0384 3.0057 48 1 4.0866 -3.6184 5.3698 49 1 3.7209 -1.8384 7.0316 50 1 3.7452 0.5225 6.3324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279318979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:50 Heat of formation + Delta-G solvation = -33.653287 kcal Electronic energy + Delta-G solvation = -30800.803010 eV Core-core repulsion = 26793.234303 eV Total energy + Delta-G solvation = -4007.568707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.90165 -40.20795 -39.57162 -37.43386 -36.30184 -34.85387 -33.97892 -33.09125 -32.30445 -31.75996 -29.95346 -29.24341 -27.16044 -26.03881 -24.42865 -23.47084 -23.29682 -22.91812 -22.34206 -21.10942 -20.24078 -19.22093 -18.56777 -17.72114 -17.52713 -17.05604 -16.97134 -16.66652 -16.35950 -15.96567 -15.84597 -15.72492 -15.26464 -15.17555 -14.89822 -14.77116 -14.64181 -14.39529 -14.22022 -14.11765 -13.58786 -13.39054 -13.16676 -13.06938 -12.97895 -12.86222 -12.77928 -12.45038 -12.38128 -12.20619 -12.09907 -12.04362 -11.89781 -11.87836 -11.75764 -10.99865 -10.94871 -10.71957 -10.42236 -9.87514 -9.79128 -9.67230 -9.08399 -7.98970 -5.29907 0.36732 0.52279 1.17163 1.44728 1.47764 1.48908 1.54988 1.84993 2.54248 2.84321 2.99209 3.34243 3.39444 3.48463 3.58561 3.73232 3.79246 3.94979 4.04317 4.06437 4.08928 4.13502 4.20217 4.22726 4.24186 4.28423 4.30646 4.41568 4.51225 4.59225 4.67512 4.71939 4.75882 4.81981 4.85064 4.93962 4.96843 5.02164 5.05341 5.11045 5.17794 5.36677 5.45838 5.56034 5.58343 5.65379 5.67413 5.71201 5.86863 6.12459 6.21901 6.30246 7.05584 7.28342 7.99609 8.25098 9.24170 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.003348 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.959000 B = 8362.338606 C =10271.586156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.164 4.164 3 C 0.121 3.879 4 H 0.060 0.940 5 O -0.380 6.380 6 C 0.044 3.956 7 C -0.145 4.145 8 C -0.131 4.131 9 H 0.134 0.866 10 C 0.521 3.479 11 O -0.574 6.574 12 N -0.593 5.593 13 C 0.126 3.874 14 C 0.151 3.849 15 N -0.742 5.742 16 C -0.252 4.252 17 H 0.073 0.927 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.977 3.023 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.138 3.862 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.132 4.132 30 C -0.121 4.121 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.001 0.999 42 H 0.375 0.625 43 H 0.253 0.747 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.142 0.858 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.130 0.870 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.062 -18.207 -15.891 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.064 3.936 4 H 0.078 0.922 5 O -0.299 6.299 6 C -0.032 4.032 7 C -0.183 4.183 8 C -0.152 4.152 9 H 0.152 0.848 10 C 0.310 3.690 11 O -0.453 6.453 12 N -0.324 5.324 13 C 0.002 3.998 14 C 0.024 3.976 15 N -0.386 5.386 16 C -0.384 4.384 17 H 0.091 0.909 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.804 3.196 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.199 1.199 24 C 0.017 3.983 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.150 4.150 30 C -0.139 4.139 31 H 0.142 0.858 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.019 0.981 42 H 0.207 0.793 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.159 0.841 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.148 0.852 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.537 -17.884 -16.190 28.165 hybrid contribution -0.852 1.155 1.198 1.869 sum 13.685 -16.729 -14.992 26.304 Atomic orbital electron populations 1.24079 0.96123 1.02652 0.97447 1.22775 0.95853 0.97264 1.02261 1.21934 0.90704 0.96751 0.84251 0.92202 1.88904 1.38861 1.61013 1.41144 1.23357 0.93485 0.92704 0.93669 1.23086 0.99508 0.99145 0.96523 1.22989 0.97116 1.02504 0.92616 0.84809 1.20830 0.86044 0.77767 0.84326 1.90723 1.22429 1.47530 1.84639 1.47877 1.14952 1.63328 1.06251 1.21297 0.95850 0.93943 0.88675 1.20927 0.94473 0.93324 0.88918 1.42377 1.55438 1.07243 1.33518 1.19544 1.22658 0.86590 1.09583 0.90897 1.25600 0.99727 1.02242 0.98734 1.69809 1.34222 1.35224 1.22487 0.85179 0.77687 0.79547 0.77138 1.20691 1.21764 1.19863 1.20902 0.81439 0.91180 1.04760 1.20246 1.01596 0.95755 0.94048 1.21332 0.99617 0.92716 0.99515 1.21475 0.99411 0.96716 0.96562 1.21495 0.98897 1.00102 0.93569 1.21402 1.00037 0.92860 1.00683 1.21260 0.99525 0.97141 0.96020 0.85765 0.89775 0.84638 0.92174 0.86307 0.91021 0.85725 0.92569 0.89200 0.95033 0.98119 0.79335 0.93782 0.88631 0.86337 0.84068 0.83593 0.84180 0.85210 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 14.33 67.78 0.97 -2.72 16 2 C -0.16 -3.54 9.24 25.65 0.24 -3.30 16 3 C 0.12 2.88 2.88 30.53 0.09 2.97 16 4 H 0.06 1.78 7.01 -2.39 -0.02 1.77 16 5 O -0.38 -8.19 11.21 -148.98 -1.67 -9.86 16 6 C 0.04 0.67 7.70 72.35 0.56 1.22 16 7 C -0.14 -2.17 5.67 31.59 0.18 -1.99 16 8 C -0.13 -2.66 1.92 -10.24 -0.02 -2.67 16 9 H 0.13 2.07 4.77 -2.38 -0.01 2.06 16 10 C 0.52 15.33 6.86 87.66 0.60 15.93 16 11 O -0.57 -22.71 15.32 -3.04 -0.05 -22.76 16 12 N -0.59 -16.20 2.46 -826.15 -2.03 -18.23 16 13 C 0.13 4.44 5.50 86.38 0.48 4.91 16 14 C 0.15 6.49 6.58 86.38 0.57 7.06 16 15 N -0.74 -39.68 5.60 -343.42 -1.92 -41.60 16 16 C -0.25 -14.63 9.99 84.04 0.84 -13.79 16 17 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 19 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 20 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 C 0.14 2.61 5.29 85.64 0.45 3.07 16 25 C -0.12 -2.16 5.44 -19.86 -0.11 -2.27 16 26 C -0.11 -1.71 9.00 22.27 0.20 -1.51 16 27 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 28 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 29 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 30 C -0.12 -2.55 9.20 22.27 0.20 -2.34 16 31 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.08 2.16 7.87 -2.91 -0.02 2.14 16 33 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.07 1.31 7.85 -2.39 -0.02 1.29 16 37 H 0.12 0.96 6.94 -2.39 -0.02 0.94 16 38 H 0.06 2.30 7.49 -2.39 -0.02 2.28 16 39 H 0.09 2.92 6.57 -2.39 -0.02 2.91 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.10 1.79 8.11 -2.39 -0.02 1.77 16 45 H 0.12 1.51 4.55 -2.39 -0.01 1.50 16 46 H 0.14 1.45 6.05 -2.91 -0.02 1.43 16 47 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 50 H 0.12 2.59 7.15 -2.91 -0.02 2.57 16 Total: -1.00 -76.71 404.81 3.26 -73.46 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.23 Total: 34.56 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.39 Total: -4.54 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -3.67 Total: -119.76 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.72 Total: -32.62 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -76.71 3.26 -73.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279318979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.802 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds