Wall clock time and date at job start Wed Apr 1 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 H 1.09001 * 109.47248 * 305.00227 * 3 2 1 5 5 C 1.52997 * 109.47050 * 65.00571 * 3 2 1 6 6 C 1.53001 * 109.46805 * 185.00317 * 3 2 1 7 7 N 1.46895 * 109.47323 * 64.99538 * 6 3 2 8 8 C 1.46847 * 111.00522 * 75.88789 * 7 6 3 9 9 C 1.53039 * 109.52614 * 185.84044 * 8 7 6 10 10 C 1.53117 * 109.28010 * 300.82188 * 9 8 7 11 11 C 1.53129 * 109.15876 * 57.65340 * 10 9 8 12 12 C 1.53002 * 109.49904 * 182.36897 * 11 10 9 13 13 O 1.42902 * 109.46737 * 294.54028 * 12 11 10 14 14 N 1.46493 * 109.50110 * 62.28901 * 11 10 9 15 15 C 1.34780 * 119.99646 * 181.08784 * 14 11 10 16 16 O 1.21278 * 120.00256 * 354.94761 * 15 14 11 17 17 C 1.50701 * 119.99755 * 174.94853 * 15 14 11 18 18 S 1.81002 * 109.47073 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00242 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00195 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99967 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00140 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46917 * 90.00140 * 23 21 19 25 25 H 1.48502 * 109.47001 * 209.99780 * 23 21 19 26 26 H 1.48491 * 109.46999 * 329.99928 * 23 21 19 27 27 C 1.46845 * 111.00227 * 200.09983 * 7 6 3 28 28 H 1.09001 * 109.46666 * 299.99724 * 1 2 3 29 29 H 1.08994 * 109.47545 * 59.99524 * 1 2 3 30 30 H 1.09005 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46666 * 240.00276 * 2 1 3 32 32 H 1.09003 * 109.47804 * 120.00430 * 2 1 3 33 33 H 1.09000 * 109.47135 * 182.37300 * 5 3 2 34 34 H 1.09003 * 109.47015 * 302.37021 * 5 3 2 35 35 H 1.08996 * 109.47541 * 62.36425 * 5 3 2 36 36 H 1.08993 * 109.47315 * 304.98768 * 6 3 2 37 37 H 1.09006 * 109.46636 * 184.99024 * 6 3 2 38 38 H 1.09006 * 109.46150 * 65.82563 * 8 7 6 39 39 H 1.08997 * 109.46144 * 305.86094 * 8 7 6 40 40 H 1.08995 * 109.50291 * 180.88144 * 9 8 7 41 41 H 1.09000 * 109.50075 * 60.76582 * 9 8 7 42 42 H 1.09002 * 109.52146 * 297.75381 * 10 9 8 43 43 H 1.08998 * 109.57546 * 177.58851 * 10 9 8 44 44 H 1.08997 * 109.47556 * 54.54870 * 12 11 10 45 45 H 1.09000 * 109.46415 * 174.54909 * 12 11 10 46 46 H 0.96704 * 113.99688 * 179.97438 * 13 12 11 47 47 H 0.97003 * 120.00282 * 1.35899 * 14 11 10 48 48 H 1.08998 * 109.47475 * 299.99772 * 17 15 14 49 49 H 1.09002 * 109.47190 * 60.00116 * 17 15 14 50 50 H 0.96997 * 120.00005 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.45727 * 54.14035 * 27 7 6 52 52 H 1.08996 * 109.46249 * 294.17799 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5648 1.4442 -0.1258 7 7 3.9489 0.8961 -1.4334 8 6 3.7195 1.8759 -2.5029 9 6 3.9914 1.2243 -3.8606 10 6 5.4386 0.7259 -3.9014 11 6 5.6647 -0.2561 -2.7485 12 6 7.1246 -0.7139 -2.7463 13 8 7.3887 -1.4689 -3.9306 14 7 4.7880 -1.4177 -2.9165 15 6 4.7991 -2.4081 -2.0024 16 8 5.5983 -2.3829 -1.0906 17 6 3.8182 -3.5468 -2.1133 18 16 4.0834 -4.7066 -0.7493 19 6 2.8400 -5.8999 -1.1160 20 1 2.2036 -5.7689 -1.9788 21 6 2.6783 -7.0081 -0.2962 22 7 3.4542 -7.1680 0.7550 23 14 1.3604 -8.2736 -0.6855 24 1 1.9272 -9.3218 -1.5717 25 1 0.8841 -8.8962 0.5758 26 1 0.2226 -7.6088 -1.3699 27 6 5.3442 0.4385 -1.4230 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.9620 3.1663 1.2897 34 1 0.5516 2.0879 1.4173 35 1 2.1041 1.6126 2.1466 36 1 3.9954 0.8312 0.6659 37 1 3.9355 2.4655 -0.0369 38 1 4.3891 2.7253 -2.3670 39 1 2.6856 2.2191 -2.4652 40 1 3.8362 1.9563 -4.6532 41 1 3.3127 0.3834 -4.0031 42 1 6.1182 1.5719 -3.7978 43 1 5.6250 0.2229 -4.8502 44 1 7.7787 0.1575 -2.7174 45 1 7.3089 -1.3359 -1.8704 46 1 8.2979 -1.7917 -3.9966 47 1 4.2024 -1.4759 -3.6876 48 1 2.8015 -3.1566 -2.0664 49 1 3.9660 -4.0625 -3.0622 50 1 3.3410 -7.9423 1.3281 51 1 5.4904 -0.2623 -0.6010 52 1 6.0062 1.2945 -1.2922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279461314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:50 Heat of formation + Delta-G solvation = -99.768366 kcal Electronic energy + Delta-G solvation = -30249.240370 eV Core-core repulsion = 26374.248650 eV Total energy + Delta-G solvation = -3874.991720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48857 -38.30864 -37.00279 -36.02815 -33.92689 -32.37680 -32.31939 -31.07282 -29.84263 -28.30814 -26.61872 -25.91939 -25.40098 -23.81891 -22.82202 -21.74899 -20.69017 -19.58280 -18.97826 -17.78701 -17.29552 -16.49785 -16.03800 -15.71452 -15.19835 -15.06111 -14.74461 -14.67168 -14.44021 -14.18958 -14.07715 -13.88808 -13.56010 -13.44284 -13.05238 -13.00293 -12.74842 -12.63064 -12.35569 -12.23343 -12.00110 -11.83943 -11.73087 -11.67365 -11.34421 -11.10888 -11.01382 -10.95213 -10.89242 -10.69919 -10.51185 -10.48904 -10.32605 -10.27553 -10.01585 -9.72798 -9.00021 -8.95139 -8.58255 -8.27518 -8.13116 -6.39545 -6.15182 -3.83477 3.15104 3.26342 3.32170 3.33343 3.38202 3.65452 3.90857 4.27744 4.30353 4.56804 4.64168 4.78375 4.79212 4.97011 5.10521 5.19905 5.20367 5.22211 5.27631 5.32253 5.37045 5.42269 5.46371 5.49803 5.53406 5.56331 5.63228 5.66667 5.71017 5.71915 5.80097 5.82937 5.92169 5.95101 5.99682 6.07051 6.10086 6.11845 6.15788 6.17748 6.30552 6.35941 6.50628 6.68970 6.86508 7.06215 7.12070 7.65495 7.66500 8.00019 8.42283 8.86293 9.30614 10.92251 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009276 B = 0.003908 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.672180 B = 7162.678390 C = 9221.435947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.082 4.082 4 H 0.065 0.935 5 C -0.149 4.149 6 C 0.062 3.938 7 N -0.523 5.523 8 C 0.054 3.946 9 C -0.117 4.117 10 C -0.120 4.120 11 C 0.195 3.805 12 C 0.062 3.938 13 O -0.565 6.565 14 N -0.704 5.704 15 C 0.547 3.453 16 O -0.528 6.528 17 C -0.150 4.150 18 S -0.059 6.059 19 C -0.532 4.532 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.869 5.869 23 Si 0.915 3.085 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.046 3.954 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.377 0.623 47 H 0.396 0.604 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.267 0.733 51 H 0.102 0.898 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 21.855 -7.481 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.083 0.917 5 C -0.207 4.207 6 C -0.066 4.066 7 N -0.247 5.247 8 C -0.074 4.074 9 C -0.155 4.155 10 C -0.158 4.158 11 C 0.107 3.893 12 C -0.017 4.017 13 O -0.369 6.369 14 N -0.357 5.357 15 C 0.334 3.666 16 O -0.404 6.404 17 C -0.301 4.301 18 S 0.168 5.832 19 C -0.681 4.681 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.505 5.505 23 Si 0.742 3.258 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.083 4.083 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.223 0.777 47 H 0.230 0.770 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.077 0.923 51 H 0.120 0.880 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.887 21.536 -5.999 22.435 hybrid contribution -0.916 -0.241 -1.385 1.678 sum 0.972 21.295 -7.384 22.559 Atomic orbital electron populations 1.21820 0.96698 1.01601 1.00789 1.21454 0.94759 0.95405 1.03368 1.21116 0.94303 0.97261 0.97447 0.91661 1.21871 1.01575 0.99656 0.97587 1.22168 0.96113 0.97460 0.90878 1.61675 1.21165 1.38159 1.03695 1.22143 1.00902 0.92794 0.91537 1.21600 0.96667 1.00936 0.96328 1.21815 0.97130 0.98186 0.98656 1.20158 0.88472 0.85999 0.94689 1.22609 0.94993 0.95003 0.89114 1.86426 1.34463 1.73712 1.42300 1.45626 1.43491 1.19808 1.26735 1.20027 0.83609 0.81978 0.81012 1.90581 1.38940 1.77185 1.33694 1.23498 1.00709 0.99170 1.06739 1.85282 1.47663 1.20252 1.30030 1.22881 1.20646 1.09432 1.15093 0.91100 1.24957 0.96598 0.97422 0.94520 1.70020 1.37419 1.28786 1.14253 0.86217 0.80999 0.80693 0.77896 1.20336 1.20822 1.19716 1.22436 0.88246 0.98667 0.98917 0.93215 0.93447 0.92685 0.90478 0.92137 0.93365 0.92248 0.92565 0.90637 0.95136 0.95375 0.90700 0.91448 0.90807 0.91231 0.90348 0.94052 0.90685 0.77716 0.76976 0.89446 0.89794 0.92326 0.87996 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.16 0.36 -1.41 16 2 C -0.11 -1.44 5.35 -26.73 -0.14 -1.59 16 3 C -0.08 -0.87 2.44 -90.62 -0.22 -1.09 16 4 H 0.07 0.66 6.71 -51.93 -0.35 0.32 16 5 C -0.15 -1.40 9.00 37.16 0.33 -1.06 16 6 C 0.06 0.68 4.39 -3.83 -0.02 0.66 16 7 N -0.52 -6.00 3.81 -234.67 -0.89 -6.89 16 8 C 0.05 0.51 5.29 -3.83 -0.02 0.49 16 9 C -0.12 -1.02 5.91 -26.65 -0.16 -1.18 16 10 C -0.12 -1.15 4.70 -26.60 -0.13 -1.27 16 11 C 0.19 2.37 0.45 -131.74 -0.06 2.31 16 12 C 0.06 0.78 5.64 37.16 0.21 0.99 16 13 O -0.56 -7.02 13.02 -35.23 -0.46 -7.48 16 14 N -0.70 -9.98 4.42 -47.53 -0.21 -10.19 16 15 C 0.55 10.22 7.25 -10.98 -0.08 10.14 16 16 O -0.53 -11.35 12.17 5.56 0.07 -11.28 16 17 C -0.15 -3.14 6.16 36.01 0.22 -2.91 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.05 0.58 3.97 -3.83 -0.02 0.56 16 28 H 0.05 0.53 6.51 -51.93 -0.34 0.19 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.14 7.62 -51.93 -0.40 0.75 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.53 6.46 -51.93 -0.34 0.20 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 37 H 0.03 0.31 8.00 -51.93 -0.42 -0.11 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.67 6.65 -51.93 -0.35 0.33 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.70 7.08 -51.93 -0.37 0.34 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 44 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 1.15 6.26 -51.93 -0.32 0.83 16 46 H 0.38 3.25 9.12 45.56 0.42 3.67 16 47 H 0.40 5.00 7.52 -40.82 -0.31 4.69 16 48 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 49 H 0.08 1.67 8.14 -51.91 -0.42 1.25 16 50 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.10 1.62 6.05 -51.93 -0.31 1.30 16 52 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 410.79 15.07 6.19 6.19 Total: -1.00 -33.47 410.79 -9.83 -43.29 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.51 Total: 7.56 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 0.48 Total: -8.39 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.37 Total: -42.76 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.39 Total: -18.76 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.47 -9.83 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279461314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.474 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds