Wall clock time and date at job start Wed Apr 1 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 H 1.09001 * 109.47248 * 305.00227 * 3 2 1 5 5 C 1.52997 * 109.47050 * 65.00571 * 3 2 1 6 6 C 1.53001 * 109.46805 * 185.00317 * 3 2 1 7 7 N 1.46895 * 109.47323 * 64.99538 * 6 3 2 8 8 C 1.46847 * 111.00522 * 75.88789 * 7 6 3 9 9 C 1.53039 * 109.52614 * 185.84044 * 8 7 6 10 10 C 1.53117 * 109.28010 * 300.82188 * 9 8 7 11 11 C 1.53129 * 109.15876 * 57.65340 * 10 9 8 12 12 C 1.53002 * 109.49904 * 182.36897 * 11 10 9 13 13 O 1.42902 * 109.46737 * 294.54028 * 12 11 10 14 14 N 1.46493 * 109.50110 * 62.28901 * 11 10 9 15 15 C 1.34780 * 119.99646 * 181.08784 * 14 11 10 16 16 O 1.21278 * 120.00256 * 354.94761 * 15 14 11 17 17 C 1.50701 * 119.99755 * 174.94853 * 15 14 11 18 18 S 1.81002 * 109.47073 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00242 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00195 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99967 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00140 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46917 * 90.00140 * 23 21 19 25 25 H 1.48502 * 109.47001 * 209.99780 * 23 21 19 26 26 H 1.48491 * 109.46999 * 329.99928 * 23 21 19 27 27 C 1.46845 * 111.00227 * 200.09983 * 7 6 3 28 28 H 1.09001 * 109.46666 * 299.99724 * 1 2 3 29 29 H 1.08994 * 109.47545 * 59.99524 * 1 2 3 30 30 H 1.09005 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46666 * 240.00276 * 2 1 3 32 32 H 1.09003 * 109.47804 * 120.00430 * 2 1 3 33 33 H 1.09000 * 109.47135 * 182.37300 * 5 3 2 34 34 H 1.09003 * 109.47015 * 302.37021 * 5 3 2 35 35 H 1.08996 * 109.47541 * 62.36425 * 5 3 2 36 36 H 1.08993 * 109.47315 * 304.98768 * 6 3 2 37 37 H 1.09006 * 109.46636 * 184.99024 * 6 3 2 38 38 H 1.09006 * 109.46150 * 65.82563 * 8 7 6 39 39 H 1.08997 * 109.46144 * 305.86094 * 8 7 6 40 40 H 1.08995 * 109.50291 * 180.88144 * 9 8 7 41 41 H 1.09000 * 109.50075 * 60.76582 * 9 8 7 42 42 H 1.09002 * 109.52146 * 297.75381 * 10 9 8 43 43 H 1.08998 * 109.57546 * 177.58851 * 10 9 8 44 44 H 1.08997 * 109.47556 * 54.54870 * 12 11 10 45 45 H 1.09000 * 109.46415 * 174.54909 * 12 11 10 46 46 H 0.96704 * 113.99688 * 179.97438 * 13 12 11 47 47 H 0.97003 * 120.00282 * 1.35899 * 14 11 10 48 48 H 1.08998 * 109.47475 * 299.99772 * 17 15 14 49 49 H 1.09002 * 109.47190 * 60.00116 * 17 15 14 50 50 H 0.96997 * 120.00005 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.45727 * 54.14035 * 27 7 6 52 52 H 1.08996 * 109.46249 * 294.17799 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5648 1.4442 -0.1258 7 7 3.9489 0.8961 -1.4334 8 6 3.7195 1.8759 -2.5029 9 6 3.9914 1.2243 -3.8606 10 6 5.4386 0.7259 -3.9014 11 6 5.6647 -0.2561 -2.7485 12 6 7.1246 -0.7139 -2.7463 13 8 7.3887 -1.4689 -3.9306 14 7 4.7880 -1.4177 -2.9165 15 6 4.7991 -2.4081 -2.0024 16 8 5.5983 -2.3829 -1.0906 17 6 3.8182 -3.5468 -2.1133 18 16 4.0834 -4.7066 -0.7493 19 6 2.8400 -5.8999 -1.1160 20 1 2.2036 -5.7689 -1.9788 21 6 2.6783 -7.0081 -0.2962 22 7 3.4542 -7.1680 0.7550 23 14 1.3604 -8.2736 -0.6855 24 1 1.9272 -9.3218 -1.5717 25 1 0.8841 -8.8962 0.5758 26 1 0.2226 -7.6088 -1.3699 27 6 5.3442 0.4385 -1.4230 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.9620 3.1663 1.2897 34 1 0.5516 2.0879 1.4173 35 1 2.1041 1.6126 2.1466 36 1 3.9954 0.8312 0.6659 37 1 3.9355 2.4655 -0.0369 38 1 4.3891 2.7253 -2.3670 39 1 2.6856 2.2191 -2.4652 40 1 3.8362 1.9563 -4.6532 41 1 3.3127 0.3834 -4.0031 42 1 6.1182 1.5719 -3.7978 43 1 5.6250 0.2229 -4.8502 44 1 7.7787 0.1575 -2.7174 45 1 7.3089 -1.3359 -1.8704 46 1 8.2979 -1.7917 -3.9966 47 1 4.2024 -1.4759 -3.6876 48 1 2.8015 -3.1566 -2.0664 49 1 3.9660 -4.0625 -3.0622 50 1 3.3410 -7.9423 1.3281 51 1 5.4904 -0.2623 -0.6010 52 1 6.0062 1.2945 -1.2922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279461314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:50 Heat of formation + Delta-G solvation = -124.131393 kcal Electronic energy + Delta-G solvation = -30250.296830 eV Core-core repulsion = 26374.248650 eV Total energy + Delta-G solvation = -3876.048180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59058 -39.49556 -38.08331 -36.95947 -35.05173 -34.56690 -33.29934 -32.24460 -30.77823 -29.82326 -27.63011 -27.45876 -26.81971 -24.74351 -23.73686 -22.75319 -21.89587 -20.49235 -20.12821 -19.80210 -18.27145 -17.87080 -16.99916 -16.94520 -16.86650 -16.37826 -16.12613 -15.90239 -15.59736 -15.44964 -15.20289 -14.86230 -14.67528 -14.57089 -14.47281 -14.24593 -13.99762 -13.57787 -13.50815 -13.25342 -13.13793 -13.06565 -12.88155 -12.86334 -12.73521 -12.66278 -12.57071 -12.29014 -11.85929 -11.74739 -11.68776 -11.45549 -11.44222 -11.27174 -11.19049 -11.12803 -11.07833 -10.35814 -10.23079 -9.84577 -9.13855 -8.61158 -8.33093 -6.09030 1.29326 1.41607 1.47959 1.59820 1.82319 2.28004 2.38937 2.82544 3.00772 3.35440 3.42409 3.68509 3.79088 3.88187 4.01445 4.09345 4.11841 4.18013 4.32568 4.35860 4.39699 4.43398 4.50941 4.53641 4.55480 4.58340 4.63424 4.66407 4.74445 4.75869 4.80004 4.83001 4.88102 4.93963 5.02576 5.09356 5.16281 5.19670 5.25627 5.28424 5.37216 5.41362 5.42790 5.54403 5.63425 5.69697 6.15471 6.21181 6.28269 6.70359 6.84916 7.08382 7.44127 8.76080 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009276 B = 0.003908 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.672180 B = 7162.678390 C = 9221.435947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.073 4.073 4 H 0.080 0.920 5 C -0.146 4.146 6 C 0.064 3.936 7 N -0.537 5.537 8 C 0.054 3.946 9 C -0.114 4.114 10 C -0.110 4.110 11 C 0.189 3.811 12 C 0.065 3.935 13 O -0.576 6.576 14 N -0.683 5.683 15 C 0.548 3.452 16 O -0.560 6.560 17 C -0.127 4.127 18 S -0.139 6.139 19 C -0.547 4.547 20 H 0.077 0.923 21 C 0.016 3.984 22 N -0.911 5.911 23 Si 0.994 3.006 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.260 1.260 27 C 0.053 3.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.392 0.608 47 H 0.406 0.594 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.271 0.729 51 H 0.060 0.940 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 24.057 -9.865 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.204 4.204 6 C -0.064 4.064 7 N -0.261 5.261 8 C -0.074 4.074 9 C -0.151 4.151 10 C -0.148 4.148 11 C 0.103 3.897 12 C -0.015 4.015 13 O -0.383 6.383 14 N -0.335 5.335 15 C 0.334 3.666 16 O -0.439 6.439 17 C -0.279 4.279 18 S 0.089 5.911 19 C -0.694 4.694 20 H 0.095 0.905 21 C -0.188 4.188 22 N -0.548 5.548 23 Si 0.816 3.184 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.077 4.077 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.241 0.759 47 H 0.242 0.758 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.613 23.771 -8.424 25.227 hybrid contribution -0.449 -0.839 -0.676 1.167 sum 0.164 22.932 -9.100 24.672 Atomic orbital electron populations 1.21781 0.95503 1.00985 1.02165 1.21378 0.95784 0.96757 1.00779 1.21045 0.93802 0.95614 0.98712 0.90212 1.21845 1.01891 1.00311 0.96325 1.22120 0.96396 0.97683 0.90177 1.61662 1.20386 1.39549 1.04485 1.22230 1.01701 0.92547 0.90874 1.21608 0.95624 1.01221 0.96694 1.21774 0.98291 0.97750 0.96952 1.20420 0.87811 0.85541 0.95961 1.22531 0.95762 0.95382 0.87789 1.86374 1.36131 1.73942 1.41885 1.45430 1.43286 1.19167 1.25573 1.19668 0.82981 0.82406 0.81563 1.90590 1.40123 1.77914 1.35274 1.23334 1.02017 0.98503 1.04009 1.85405 1.48512 1.22766 1.34457 1.23195 1.20827 1.09939 1.15488 0.90501 1.26059 0.99051 0.99677 0.94058 1.70177 1.39390 1.29720 1.15466 0.85017 0.77815 0.77535 0.78018 1.19254 1.20135 1.18399 1.22249 0.89469 0.98341 0.97591 0.91940 0.91885 0.94324 0.92772 0.95045 0.91624 0.91607 0.93731 0.93336 0.93421 0.94153 0.89881 0.88858 0.91772 0.89351 0.90222 0.91141 0.94341 0.75921 0.75770 0.88510 0.88613 0.92047 0.92140 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.67 71.98 0.70 -2.67 16 2 C -0.11 -2.89 5.35 30.59 0.16 -2.72 16 3 C -0.07 -1.47 2.44 -10.79 -0.03 -1.49 16 4 H 0.08 1.41 6.71 -2.39 -0.02 1.39 16 5 C -0.15 -2.54 9.00 71.98 0.65 -1.90 16 6 C 0.06 1.39 4.39 86.30 0.38 1.77 16 7 N -0.54 -11.80 3.81 -896.37 -3.41 -15.22 16 8 C 0.05 0.84 5.29 86.33 0.46 1.30 16 9 C -0.11 -1.59 5.91 30.65 0.18 -1.40 16 10 C -0.11 -1.75 4.70 30.68 0.14 -1.61 16 11 C 0.19 4.40 0.45 3.66 0.00 4.40 16 12 C 0.06 1.57 5.64 71.98 0.41 1.98 16 13 O -0.58 -13.65 13.02 -148.98 -1.94 -15.58 16 14 N -0.68 -19.09 4.42 -422.68 -1.87 -20.95 16 15 C 0.55 21.12 7.25 87.66 0.64 21.75 16 16 O -0.56 -25.50 12.17 -3.02 -0.04 -25.54 16 17 C -0.13 -5.44 6.16 71.24 0.44 -5.00 16 18 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 19 C -0.55 -32.21 9.50 67.95 0.65 -31.57 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 21 C 0.02 0.95 5.49 84.86 0.47 1.41 16 22 N -0.91 -56.89 13.22 21.65 0.29 -56.61 16 23 Si 0.99 44.70 29.55 68.60 2.03 46.73 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 27 C 0.05 1.30 3.97 86.33 0.34 1.65 16 28 H 0.06 1.26 6.51 -2.39 -0.02 1.24 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 1.66 7.62 -2.39 -0.02 1.64 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.06 6.46 -2.39 -0.02 1.05 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 1.30 7.79 -2.39 -0.02 1.29 16 37 H 0.05 0.87 8.00 -2.38 -0.02 0.85 16 38 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.08 1.20 6.65 -2.39 -0.02 1.18 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.04 7.08 -2.39 -0.02 1.02 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.32 7.91 -2.39 -0.02 1.30 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.04 1.23 6.26 -2.39 -0.01 1.22 16 46 H 0.39 6.37 9.12 -74.05 -0.68 5.70 16 47 H 0.41 9.72 7.52 -92.71 -0.70 9.02 16 48 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 49 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 50 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 51 H 0.06 2.04 6.05 -2.38 -0.01 2.03 16 52 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.26 410.79 -0.99 -77.25 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.46 Total: 33.09 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.58 Total: -14.10 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -4.99 Total: -92.78 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.98 Total: -41.12 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -76.26 -0.99 -77.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279461314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.884 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds