Wall clock time and date at job start Wed Apr 1 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99506 * 2 1 4 4 H 1.09000 * 109.47294 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.46962 * 120.00342 * 3 2 1 6 6 C 1.50704 * 109.46908 * 294.99841 * 5 3 2 7 7 O 1.21279 * 120.00156 * 0.02562 * 6 5 3 8 8 N 1.34784 * 119.99887 * 179.97438 * 6 5 3 9 9 C 1.46495 * 119.99640 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46760 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.70993 * 60.21656 * 10 9 8 12 12 C 1.53716 * 109.74503 * 180.98775 * 10 9 8 13 13 O 1.42960 * 109.14501 * 172.16322 * 12 10 9 14 14 C 1.42956 * 114.16794 * 297.28805 * 13 12 10 15 15 C 1.53300 * 109.22371 * 62.58084 * 14 13 12 16 16 N 1.47150 * 109.67737 * 299.68094 * 10 9 8 17 17 C 1.36930 * 120.98550 * 9.76342 * 16 10 9 18 18 H 1.07998 * 120.00560 * 328.20965 * 17 16 10 19 19 C 1.38815 * 119.99802 * 148.20399 * 17 16 10 20 20 N 1.31624 * 119.99918 * 165.05191 * 19 17 16 21 21 Si 1.86798 * 120.00393 * 344.77938 * 19 17 16 22 22 H 1.48494 * 109.47283 * 89.81372 * 21 19 17 23 23 H 1.48498 * 109.47264 * 209.81581 * 21 19 17 24 24 H 1.48504 * 109.46761 * 329.81775 * 21 19 17 25 25 C 1.50706 * 109.47242 * 240.00131 * 3 2 1 26 26 C 1.38242 * 119.99783 * 299.72675 * 25 3 2 27 27 C 1.38234 * 119.99583 * 179.78639 * 26 25 3 28 28 C 1.38228 * 120.00142 * 0.44777 * 27 26 25 29 29 C 1.38238 * 120.00193 * 359.80881 * 28 27 26 30 30 C 1.38232 * 119.99951 * 359.97438 * 29 28 27 31 31 H 1.07997 * 120.00626 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99795 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.00626 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47177 * 175.00016 * 5 3 2 35 35 H 1.08998 * 109.47493 * 54.99585 * 5 3 2 36 36 H 0.96998 * 119.99548 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47267 * 60.00261 * 9 8 6 38 38 H 1.08999 * 109.47170 * 299.99697 * 9 8 6 39 39 H 1.09001 * 109.65297 * 52.19480 * 12 10 9 40 40 H 1.08998 * 109.43866 * 292.00068 * 12 10 9 41 41 H 1.08997 * 109.51601 * 302.65912 * 14 13 12 42 42 H 1.08999 * 109.55913 * 182.53087 * 14 13 12 43 43 H 1.08995 * 109.68242 * 187.97314 * 15 14 13 44 44 H 1.08998 * 109.71033 * 67.43707 * 15 14 13 45 45 H 0.96994 * 119.99997 * 180.02562 * 20 19 17 46 46 H 1.07995 * 119.99772 * 359.97438 * 26 25 3 47 47 H 1.08006 * 119.99823 * 180.27743 * 27 26 25 48 48 H 1.08001 * 120.00152 * 179.83293 * 28 27 26 49 49 H 1.07998 * 120.00161 * 180.02562 * 29 28 27 50 50 H 1.07999 * 120.00330 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 1 1.3550 2.1336 0.0005 5 6 2.9430 1.3862 1.2492 6 6 2.0696 1.4300 2.4766 7 8 0.8625 1.3990 2.3633 8 7 2.6300 1.5027 3.7002 9 6 1.7810 1.5447 4.8933 10 6 2.6607 1.6259 6.1426 11 1 3.2703 2.5287 6.1050 12 6 1.7766 1.6454 7.3999 13 8 2.6068 1.5368 8.5586 14 6 3.3425 0.3136 8.6390 15 6 4.3025 0.2228 7.4472 16 7 3.5320 0.4422 6.2128 17 6 3.6274 -0.4265 5.1587 18 1 2.7759 -0.5899 4.5148 19 6 4.8187 -1.0970 4.9175 20 7 4.8376 -2.1347 4.1080 21 14 6.3964 -0.5220 5.7357 22 1 6.5566 -1.2113 7.0412 23 1 7.5530 -0.8429 4.8613 24 1 6.3338 0.9454 5.9552 25 6 2.9297 1.3851 -1.2305 26 6 3.9128 0.4374 -1.4464 27 6 4.7045 0.5083 -2.5773 28 6 4.5195 1.5319 -3.4876 29 6 3.5400 2.4826 -3.2690 30 6 2.7452 2.4093 -2.1404 31 1 -0.5401 0.9352 0.0004 32 1 -0.5400 -0.9354 -0.0004 33 1 1.8500 -0.9352 -0.0004 34 1 3.5538 2.2879 1.2056 35 1 3.5905 0.5106 1.2952 36 1 3.5955 1.5271 3.7908 37 1 1.1702 0.6429 4.9366 38 1 1.1335 2.4203 4.8478 39 1 1.0799 0.8075 7.3713 40 1 1.2198 2.5817 7.4374 41 1 2.6516 -0.5291 8.6149 42 1 3.9122 0.2908 9.5679 43 1 4.7636 -0.7645 7.4217 44 1 5.0749 0.9864 7.5384 45 1 5.6700 -2.6034 3.9397 46 1 4.0601 -0.3599 -0.7331 47 1 5.4696 -0.2347 -2.7483 48 1 5.1399 1.5888 -4.3698 49 1 3.3951 3.2822 -3.9805 50 1 1.9797 3.1518 -1.9698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280421206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:26 Heat of formation + Delta-G solvation = -5.982182 kcal Electronic energy + Delta-G solvation = -30838.527360 eV Core-core repulsion = 26832.158563 eV Total energy + Delta-G solvation = -4006.368797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.81521 -39.12551 -38.42612 -35.79616 -35.05904 -33.58379 -31.81720 -31.28377 -30.97956 -30.85262 -29.37390 -27.53548 -25.77633 -24.06694 -23.42997 -22.64159 -22.15880 -21.25184 -20.00556 -19.77392 -18.98854 -17.25773 -16.85712 -16.19790 -16.02327 -15.85432 -15.29076 -15.10240 -15.05823 -14.90666 -14.50814 -14.32261 -14.13677 -14.00574 -13.51363 -13.39819 -13.21054 -13.00448 -12.79510 -12.57468 -12.40219 -12.16235 -11.91174 -11.71946 -11.49527 -11.36415 -11.17238 -11.15126 -10.82106 -10.79190 -10.57246 -10.42198 -10.35847 -9.85536 -9.67002 -9.49434 -9.25712 -8.88473 -8.80963 -8.71265 -8.63145 -8.20675 -7.03660 -6.07558 -3.52518 1.37942 1.43662 2.75632 3.18893 3.33010 3.36492 3.37355 3.76547 3.91605 4.28113 4.37662 4.63868 4.81651 4.90130 5.02370 5.13840 5.17723 5.19661 5.29690 5.39413 5.44507 5.52457 5.54288 5.59124 5.63265 5.72982 5.77513 5.86058 5.87440 5.89130 5.91857 6.02488 6.06119 6.08637 6.11099 6.20487 6.23951 6.30126 6.32465 6.48506 6.49350 6.54931 6.71487 6.74117 6.98972 7.06639 7.18024 7.22040 7.57505 7.78744 8.21087 8.29748 8.75426 8.94416 9.54535 9.92233 11.06153 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.003216 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.720801 B = 8704.457320 C = 9895.525474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C 0.000 4.000 4 H 0.085 0.915 5 C -0.131 4.131 6 C 0.513 3.487 7 O -0.556 6.556 8 N -0.697 5.697 9 C 0.139 3.861 10 C 0.128 3.872 11 H 0.046 0.954 12 C 0.054 3.946 13 O -0.389 6.389 14 C 0.046 3.954 15 C 0.090 3.910 16 N -0.607 5.607 17 C -0.265 4.265 18 H 0.098 0.902 19 C 0.030 3.970 20 N -0.903 5.903 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.270 1.270 25 C -0.067 4.067 26 C -0.110 4.110 27 C -0.119 4.119 28 C -0.129 4.129 29 C -0.122 4.122 30 C -0.117 4.117 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.411 0.589 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.263 0.737 46 H 0.126 0.874 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 8.054 -7.834 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.019 4.019 4 H 0.104 0.896 5 C -0.171 4.171 6 C 0.299 3.701 7 O -0.435 6.435 8 N -0.349 5.349 9 C 0.014 3.986 10 C 0.021 3.979 11 H 0.063 0.937 12 C -0.025 4.025 13 O -0.307 6.307 14 C -0.032 4.032 15 C -0.035 4.035 16 N -0.334 5.334 17 C -0.393 4.393 18 H 0.115 0.885 19 C -0.170 4.170 20 N -0.545 5.545 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C -0.067 4.067 26 C -0.127 4.127 27 C -0.137 4.137 28 C -0.147 4.147 29 C -0.141 4.141 30 C -0.135 4.135 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.248 0.752 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.144 0.856 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.970 8.042 -7.864 11.633 hybrid contribution 1.670 -0.224 0.426 1.738 sum -1.300 7.818 -7.437 10.869 Atomic orbital electron populations 1.23600 0.95777 1.01078 0.99718 1.22577 0.95912 0.96736 1.00741 1.19051 0.95109 0.97583 0.90151 0.89621 1.21663 0.98628 1.04699 0.92067 1.20370 0.88771 0.76205 0.84709 1.90637 1.14816 1.51107 1.86980 1.45947 1.11266 1.72981 1.04673 1.21067 0.92688 1.01088 0.83725 1.21544 0.92294 0.90984 0.93037 0.93686 1.22994 0.92296 1.01305 0.85881 1.87821 1.60613 1.39332 1.42928 1.23059 0.94785 0.86564 0.98785 1.22061 0.94040 1.00670 0.86731 1.44440 1.51339 1.24792 1.12803 1.19026 0.97363 1.17140 1.05792 0.88497 1.25351 0.97309 0.97357 0.96972 1.69781 1.27029 1.19187 1.38490 0.87011 0.84289 0.79537 0.77949 1.21556 1.23128 1.19545 1.19877 0.95996 0.94856 0.95941 1.21149 0.95159 0.98875 0.97563 1.21160 0.99519 0.98422 0.94585 1.21103 0.98688 0.95459 0.99492 1.21082 0.96292 0.99079 0.97597 1.21060 0.99790 0.98204 0.94479 0.88809 0.89193 0.87677 0.89390 0.88090 0.75227 0.91373 0.92332 0.92918 0.89444 0.93040 0.89785 0.90132 0.94773 0.92647 0.85607 0.86179 0.86497 0.86399 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 13.22 29.02 0.38 -2.10 16 2 C -0.14 -2.18 7.42 -36.02 -0.27 -2.45 16 3 C 0.00 0.00 1.99 -92.92 -0.18 -0.19 16 4 H 0.09 1.23 7.33 -51.93 -0.38 0.85 16 5 C -0.13 -1.99 4.90 -27.88 -0.14 -2.13 16 6 C 0.51 9.27 7.58 -10.98 -0.08 9.18 16 7 O -0.56 -11.16 14.17 5.56 0.08 -11.09 16 8 N -0.70 -12.74 3.77 -60.29 -0.23 -12.97 16 9 C 0.14 2.47 4.46 -4.04 -0.02 2.45 16 10 C 0.13 2.32 3.23 -67.20 -0.22 2.10 16 11 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 12 C 0.05 0.88 6.31 37.53 0.24 1.12 16 13 O -0.39 -6.89 10.74 -35.23 -0.38 -7.27 16 14 C 0.05 0.81 6.98 37.31 0.26 1.07 16 15 C 0.09 1.84 4.37 -3.53 -0.02 1.83 16 16 N -0.61 -13.02 2.77 -164.05 -0.45 -13.48 16 17 C -0.27 -6.51 7.47 -15.06 -0.11 -6.63 16 18 H 0.10 2.62 6.05 -52.49 -0.32 2.30 16 19 C 0.03 0.78 5.31 -17.43 -0.09 0.69 16 20 N -0.90 -25.29 13.97 55.49 0.78 -24.52 16 21 Si 0.88 20.61 24.28 -169.99 -4.13 16.48 16 22 H -0.29 -6.63 6.60 56.52 0.37 -6.26 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.27 -6.21 6.50 56.52 0.37 -5.84 16 25 C -0.07 -0.87 4.77 -104.62 -0.50 -1.37 16 26 C -0.11 -1.42 8.87 -39.58 -0.35 -1.77 16 27 C -0.12 -1.38 10.05 -39.59 -0.40 -1.77 16 28 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 29 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 30 C -0.12 -1.37 9.67 -39.58 -0.38 -1.76 16 31 H 0.09 1.39 7.83 -52.49 -0.41 0.98 16 32 H 0.09 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.11 1.65 8.05 -52.49 -0.42 1.23 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.64 7.55 -51.93 -0.39 1.25 16 36 H 0.41 7.74 7.29 -40.82 -0.30 7.45 16 37 H 0.07 1.37 7.58 -51.93 -0.39 0.97 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.77 4.94 -51.93 -0.26 1.51 16 44 H 0.03 0.71 6.71 -51.93 -0.35 0.36 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.13 1.66 7.62 -52.49 -0.40 1.26 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.12 1.22 7.95 -52.49 -0.42 0.81 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -29.53 393.01 -8.97 -38.49 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -7.89 Total: 13.59 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.67 Total: -5.18 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.09 Total: -50.96 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.30 Total: -18.35 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.13 Total: 16.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.53 -8.97 -38.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280421206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.512 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds