Wall clock time and date at job start Wed Apr 1 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46748 * 2 1 4 4 H 1.08997 * 109.47684 * 305.28961 * 3 2 1 5 5 C 1.52998 * 109.46987 * 185.28464 * 3 2 1 6 6 N 1.46903 * 109.47676 * 179.97438 * 5 3 2 7 7 C 1.46901 * 110.99844 * 293.96102 * 6 5 3 8 8 C 1.46895 * 111.00535 * 170.00376 * 6 5 3 9 9 C 1.53003 * 109.47010 * 190.00428 * 8 6 5 10 10 H 1.08999 * 109.87120 * 295.43301 * 9 8 6 11 11 C 1.54331 * 109.87838 * 174.26089 * 9 8 6 12 12 C 1.55156 * 102.94004 * 218.38542 * 11 9 8 13 13 C 1.54916 * 101.58101 * 35.50495 * 12 11 9 14 14 N 1.47023 * 109.88466 * 56.45342 * 9 8 6 15 15 C 1.34774 * 125.64548 * 298.32503 * 14 9 8 16 16 O 1.21279 * 120.00075 * 359.97438 * 15 14 9 17 17 C 1.50704 * 119.99715 * 180.02562 * 15 14 9 18 18 S 1.81001 * 109.46829 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99903 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00094 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00332 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47136 * 89.99998 * 23 21 19 25 25 H 1.48501 * 109.47567 * 210.00083 * 23 21 19 26 26 H 1.48510 * 109.47016 * 330.00147 * 23 21 19 27 27 O 1.42905 * 109.47120 * 65.28922 * 3 2 1 28 28 C 1.42891 * 113.99927 * 260.98197 * 27 3 2 29 29 H 1.09004 * 109.46795 * 173.02848 * 1 2 3 30 30 H 1.09000 * 109.47177 * 293.01930 * 1 2 3 31 31 H 1.09001 * 109.46971 * 53.03034 * 1 2 3 32 32 H 1.08996 * 109.46909 * 239.99949 * 2 1 3 33 33 H 1.09005 * 109.46819 * 119.99997 * 2 1 3 34 34 H 1.08997 * 109.47778 * 300.00460 * 5 3 2 35 35 H 1.09008 * 109.46877 * 60.00320 * 5 3 2 36 36 H 1.08997 * 109.47174 * 59.99790 * 7 6 5 37 37 H 1.09000 * 109.47082 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47026 * 299.99507 * 7 6 5 39 39 H 1.09008 * 109.46962 * 309.99846 * 8 6 5 40 40 H 1.08992 * 109.47083 * 69.99861 * 8 6 5 41 41 H 1.08999 * 110.72201 * 336.74757 * 11 9 8 42 42 H 1.08997 * 110.71568 * 100.02492 * 11 9 8 43 43 H 1.09001 * 111.00640 * 277.43174 * 12 11 9 44 44 H 1.09001 * 111.03831 * 153.58907 * 12 11 9 45 45 H 1.08995 * 110.36552 * 204.15140 * 13 12 11 46 46 H 1.08998 * 110.45867 * 81.87218 * 13 12 11 47 47 H 1.09000 * 109.46468 * 299.99413 * 17 15 14 48 48 H 1.08997 * 109.47443 * 59.99646 * 17 15 14 49 49 H 0.97003 * 120.00561 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.47306 * 304.84667 * 28 27 3 51 51 H 1.08998 * 109.47120 * 64.84832 * 28 27 3 52 52 H 1.09006 * 109.47413 * 184.85152 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6013 1.9830 -0.8388 5 6 3.5641 1.4446 -0.1329 6 7 4.0538 2.8296 -0.1335 7 6 3.5976 3.5487 -1.3305 8 6 5.5179 2.8705 -0.0209 9 6 5.9704 4.3112 0.2255 10 1 5.7271 4.9289 -0.6390 11 6 7.4907 4.3460 0.4884 12 6 7.6270 5.4229 1.5971 13 6 6.3382 5.1841 2.4227 14 7 5.3077 4.8454 1.4243 15 6 3.9784 5.0003 1.5837 16 8 3.2200 4.6875 0.6905 17 6 3.4346 5.5634 2.8715 18 16 1.6290 5.6480 2.7780 19 6 1.2715 6.3207 4.3669 20 1 2.0760 6.5457 5.0514 21 6 -0.0438 6.5612 4.7387 22 7 -0.3109 7.0641 5.9254 23 14 -1.4353 6.1712 3.5550 24 1 -1.8912 4.7744 3.7699 25 1 -2.5659 7.1034 3.7956 26 1 -0.9550 6.3258 2.1582 27 8 1.6677 2.0793 1.2239 28 6 0.5032 2.9010 1.1208 29 1 -0.3633 -1.0201 -0.1247 30 1 -0.3633 0.4019 0.9458 31 1 -0.3633 0.6180 -0.8211 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0028 0.9041 0.7059 35 1 3.8481 0.9588 -1.0665 36 1 2.5079 3.5632 -1.3523 37 1 3.9738 4.5714 -1.3053 38 1 3.9722 3.0452 -2.2216 39 1 5.8360 2.2424 0.8114 40 1 5.9638 2.5025 -0.9448 41 1 7.8426 3.3782 0.8456 42 1 8.0305 4.6465 -0.4096 43 1 7.6367 6.4253 1.1690 44 1 8.5166 5.2504 2.2029 45 1 6.0603 6.0893 2.9624 46 1 6.4790 4.3567 3.1182 47 1 3.7261 4.9195 3.7012 48 1 3.8372 6.5640 3.0292 49 1 -1.2302 7.2326 6.1852 50 1 0.6459 3.6356 0.3282 51 1 -0.3611 2.2789 0.8883 52 1 0.3365 3.4155 2.0672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281915744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:33 Heat of formation + Delta-G solvation = -49.105572 kcal Electronic energy + Delta-G solvation = -30977.919037 eV Core-core repulsion = 27105.124220 eV Total energy + Delta-G solvation = -3872.794817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -39.99451 -38.37428 -36.90139 -36.11469 -33.05472 -32.35625 -31.62521 -30.63069 -28.61303 -28.55490 -26.53772 -25.60367 -25.48855 -24.19658 -22.68530 -21.27025 -21.04988 -20.44614 -18.65965 -17.51586 -16.69389 -16.52973 -16.34992 -15.61637 -15.03473 -14.92132 -14.74807 -14.51774 -14.32918 -14.04674 -13.73480 -13.64447 -13.37953 -13.31392 -12.88133 -12.77977 -12.64000 -12.49911 -12.39752 -12.08995 -11.84455 -11.66612 -11.58988 -11.39298 -11.34960 -11.24067 -11.15584 -11.11434 -10.98191 -10.84035 -10.70723 -10.54715 -10.42506 -10.10490 -9.79990 -8.93525 -8.85580 -8.78681 -8.33933 -8.31492 -7.55764 -6.72982 -6.21186 -3.88329 2.91412 3.33477 3.36616 3.50274 3.51574 3.77735 4.04915 4.31636 4.37846 4.46531 4.61446 4.74952 4.91513 4.99585 5.07717 5.15615 5.18162 5.20516 5.26496 5.31836 5.40101 5.41180 5.51112 5.55490 5.59539 5.60236 5.67828 5.72721 5.75919 5.76837 5.82957 5.85882 5.92702 5.97110 6.02093 6.06273 6.08525 6.15259 6.20830 6.25790 6.27516 6.36711 6.46412 6.72687 6.79398 7.36684 7.45526 7.91518 8.02020 8.05502 8.51279 9.02756 9.25803 10.88786 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008622 B = 0.005373 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.616891 B = 5209.806770 C = 7915.543272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.096 3.904 4 H 0.055 0.945 5 C 0.056 3.944 6 N -0.493 5.493 7 C 0.059 3.941 8 C 0.047 3.953 9 C 0.146 3.854 10 H 0.069 0.931 11 C -0.127 4.127 12 C -0.131 4.131 13 C 0.101 3.899 14 N -0.617 5.617 15 C 0.545 3.455 16 O -0.462 6.462 17 C -0.112 4.112 18 S -0.132 6.132 19 C -0.519 4.519 20 H 0.085 0.915 21 C 0.095 3.905 22 N -0.884 5.884 23 Si 0.853 3.147 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.235 1.235 27 O -0.350 6.350 28 C 0.039 3.961 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.069 0.931 38 H -0.006 1.006 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.269 0.731 50 H 0.042 0.958 51 H 0.020 0.980 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.959 -10.126 -14.133 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.037 3.963 4 H 0.073 0.927 5 C -0.072 4.072 6 N -0.216 5.216 7 C -0.089 4.089 8 C -0.082 4.082 9 C 0.041 3.959 10 H 0.087 0.913 11 C -0.165 4.165 12 C -0.170 4.170 13 C -0.023 4.023 14 N -0.356 5.356 15 C 0.331 3.669 16 O -0.332 6.332 17 C -0.263 4.263 18 S 0.094 5.906 19 C -0.666 4.666 20 H 0.103 0.897 21 C -0.113 4.113 22 N -0.522 5.522 23 Si 0.678 3.322 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.159 1.159 27 O -0.268 6.268 28 C -0.058 4.058 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.012 0.988 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.079 0.921 50 H 0.060 0.940 51 H 0.038 0.962 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.457 -10.287 -14.741 21.870 hybrid contribution 0.402 -0.123 0.031 0.422 sum 12.859 -10.411 -14.710 22.139 Atomic orbital electron populations 1.21824 0.95737 1.01107 1.02301 1.22005 0.96496 0.97631 1.01917 1.22011 0.93580 0.91793 0.88894 0.92690 1.22267 0.95273 0.90263 0.99441 1.62220 1.07697 1.12004 1.39701 1.22154 1.01081 0.98400 0.87271 1.22575 0.89329 0.96665 0.99670 1.21483 0.91069 0.93901 0.89415 0.91350 1.22650 0.94545 0.99858 0.99471 1.22751 0.97606 0.99332 0.97262 1.22215 0.87568 1.00590 0.91891 1.48347 1.05172 1.66142 1.15951 1.19566 0.80081 0.78236 0.88971 1.90701 1.55491 1.45201 1.41768 1.23220 1.01925 1.03049 0.98105 1.84463 0.98374 1.83970 1.23749 1.22418 0.96719 1.47833 0.99678 0.89738 1.24693 0.98075 0.93651 0.94900 1.69945 1.20298 1.42797 1.19124 0.86799 0.82432 0.79200 0.83737 1.19239 1.20247 1.15898 1.87978 1.45827 1.63284 1.29692 1.22934 0.85860 0.92759 1.04225 0.93094 0.91775 0.93133 0.92034 0.91309 0.90981 0.95276 0.91768 0.91253 0.98781 0.91111 0.95267 0.90647 0.90478 0.90728 0.90175 0.90731 0.91916 0.89555 0.89788 0.92142 0.93977 0.96191 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.77 37.16 0.33 -1.47 16 2 C -0.14 -1.71 5.64 -26.73 -0.15 -1.86 16 3 C 0.10 1.38 2.15 -26.73 -0.06 1.32 16 4 H 0.06 0.81 6.03 -51.93 -0.31 0.50 16 5 C 0.06 0.74 4.65 -3.82 -0.02 0.73 16 6 N -0.49 -7.03 1.98 -242.92 -0.48 -7.51 16 7 C 0.06 0.83 7.07 60.07 0.42 1.25 16 8 C 0.05 0.55 4.55 -3.83 -0.02 0.54 16 9 C 0.15 1.67 2.90 -66.95 -0.19 1.47 16 10 H 0.07 0.84 6.72 -51.93 -0.35 0.49 16 11 C -0.13 -1.02 6.48 -24.89 -0.16 -1.18 16 12 C -0.13 -1.06 7.09 -24.58 -0.17 -1.24 16 13 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16 14 N -0.62 -8.59 3.06 -163.01 -0.50 -9.09 16 15 C 0.54 9.76 7.43 -10.98 -0.08 9.67 16 16 O -0.46 -8.88 10.00 5.56 0.06 -8.82 16 17 C -0.11 -2.26 5.16 36.01 0.19 -2.08 16 18 S -0.13 -3.26 16.97 -107.50 -1.82 -5.09 16 19 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 20 H 0.08 2.59 8.03 -52.48 -0.42 2.17 16 21 C 0.09 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.97 13.97 55.49 0.78 -26.19 16 23 Si 0.85 21.60 27.74 -169.99 -4.71 16.89 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 27 O -0.35 -6.36 10.04 -35.23 -0.35 -6.71 16 28 C 0.04 0.72 10.28 101.05 1.04 1.76 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.85 6.55 -51.93 -0.34 0.51 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 35 H 0.03 0.34 8.12 -51.92 -0.42 -0.08 16 36 H 0.06 1.01 6.40 -51.93 -0.33 0.67 16 37 H 0.07 1.04 5.48 -51.93 -0.28 0.76 16 38 H -0.01 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.07 0.85 7.85 -51.92 -0.41 0.44 16 40 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.85 7.47 -51.93 -0.39 0.46 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 48 H 0.08 1.64 7.85 -51.92 -0.41 1.23 16 49 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.04 0.80 8.00 -51.93 -0.42 0.39 16 51 H 0.02 0.32 5.81 -51.93 -0.30 0.02 16 52 H 0.10 2.08 6.71 -51.93 -0.35 1.73 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -32.03 403.68 -8.99 -41.03 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.35 Total: 1.40 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 1.32 Total: -1.98 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.21 Total: -42.80 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.30 Total: -15.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.82 Total: -5.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.03 -8.99 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281915744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.079 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds