Wall clock time and date at job start Wed Apr 1 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 N 1.46502 * 109.47010 * 185.14505 * 3 2 1 5 5 C 1.34778 * 119.99767 * 94.42425 * 4 3 2 6 6 O 1.21284 * 120.00163 * 184.92115 * 5 4 3 7 7 C 1.50701 * 120.00213 * 4.91311 * 5 4 3 8 8 H 1.09000 * 110.83251 * 35.84347 * 7 5 4 9 9 C 1.54716 * 110.94337 * 272.12491 * 7 5 4 10 10 O 1.43761 * 102.79095 * 216.44864 * 9 7 5 11 11 C 1.36126 * 109.29052 * 27.55399 * 10 9 7 12 12 C 1.39283 * 129.87762 * 161.44387 * 11 10 9 13 13 C 1.37934 * 120.24462 * 179.56277 * 12 11 10 14 14 C 1.38288 * 120.34975 * 0.05091 * 13 12 11 15 15 C 1.38351 * 119.76369 * 0.16088 * 14 13 12 16 16 C 1.37738 * 119.98083 * 359.96768 * 15 14 13 17 17 C 1.46500 * 120.00291 * 274.42037 * 4 3 2 18 18 H 1.08994 * 110.64198 * 1.69035 * 17 4 3 19 19 C 1.55159 * 110.71579 * 125.02385 * 17 4 3 20 20 C 1.54918 * 101.58028 * 153.86730 * 19 17 4 21 21 N 1.47429 * 104.82702 * 322.99140 * 20 19 17 22 22 C 1.36938 * 125.64150 * 204.16624 * 21 20 19 23 23 H 1.08001 * 119.99606 * 179.97438 * 22 21 20 24 24 C 1.38815 * 120.00263 * 359.95095 * 22 21 20 25 25 N 1.31612 * 120.00093 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47239 * 60.00218 * 26 24 22 28 28 H 1.48503 * 109.46960 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47487 * 300.00432 * 26 24 22 30 30 C 1.47012 * 108.70808 * 24.12852 * 21 20 19 31 31 H 1.09000 * 109.47672 * 59.99481 * 1 2 3 32 32 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46878 * 300.00073 * 1 2 3 34 34 H 1.09008 * 109.46878 * 239.99927 * 2 1 3 35 35 H 1.09006 * 109.47007 * 120.00683 * 2 1 3 36 36 H 1.09000 * 109.47291 * 65.15052 * 3 2 1 37 37 H 1.08998 * 109.47452 * 305.14759 * 3 2 1 38 38 H 1.08996 * 110.74563 * 334.77683 * 9 7 5 39 39 H 1.09002 * 110.74744 * 98.12413 * 9 7 5 40 40 H 1.07998 * 119.88479 * 359.57376 * 12 11 10 41 41 H 1.07998 * 119.82695 * 180.02562 * 13 12 11 42 42 H 1.07995 * 120.12054 * 180.13390 * 14 13 12 43 43 H 1.08003 * 120.01155 * 180.02562 * 15 14 13 44 44 H 1.08999 * 111.00461 * 271.94023 * 19 17 4 45 45 H 1.08999 * 111.00930 * 35.79490 * 19 17 4 46 46 H 1.08993 * 110.36603 * 204.15162 * 20 19 17 47 47 H 1.09001 * 110.45750 * 81.87285 * 20 19 17 48 48 H 0.96995 * 119.99980 * 179.97438 * 25 24 22 49 49 H 1.09001 * 109.88399 * 239.52240 * 30 21 20 50 50 H 1.08994 * 109.88913 * 118.35810 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4998 1.4442 -0.1239 5 6 4.0729 1.5698 -1.3372 6 8 5.2772 1.4819 -1.4511 7 6 3.2174 1.8193 -2.5525 8 1 2.3721 2.4618 -2.3063 9 6 2.7364 0.4863 -3.1734 10 8 2.7651 0.7634 -4.5837 11 6 3.7047 1.7156 -4.8359 12 6 4.3321 2.0564 -6.0318 13 6 5.2618 3.0749 -6.0630 14 6 5.5801 3.7659 -4.9083 15 6 4.9646 3.4307 -3.7155 16 6 4.0380 2.4122 -3.6816 17 6 4.3365 1.3096 1.0711 18 1 3.7189 1.1888 1.9610 19 6 5.3243 0.1228 0.9185 20 6 6.4786 0.5564 1.8564 21 7 6.5752 2.0176 1.6851 22 6 7.6905 2.7765 1.9202 23 1 7.6596 3.8447 1.7636 24 6 8.8607 2.1731 2.3601 25 7 8.8984 0.8714 2.5508 26 14 10.3818 3.2085 2.6813 27 1 10.0821 4.2166 3.7297 28 1 11.4897 2.3320 3.1392 29 1 10.7833 3.9002 1.4300 30 6 5.2763 2.5246 1.2194 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5140 0.8900 36 1 1.7540 1.9290 0.9325 37 1 1.6034 1.9822 -0.8403 38 1 3.4212 -0.3245 -2.9251 39 1 1.7234 0.2514 -2.8465 40 1 4.0898 1.5214 -6.9382 41 1 5.7439 3.3338 -6.9941 42 1 6.3069 4.5642 -4.9374 43 1 5.2100 3.9680 -2.8113 44 1 4.8722 -0.8083 1.2601 45 1 5.6706 0.0325 -0.1111 46 1 7.4107 0.0770 1.5575 47 1 6.2412 0.3107 2.8915 48 1 9.7162 0.4497 2.8578 49 1 5.3957 3.0207 0.2562 50 1 4.8672 3.2226 1.9499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317772020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:19 Heat of formation + Delta-G solvation = 3.859951 kcal Electronic energy + Delta-G solvation = -31673.062951 eV Core-core repulsion = 27667.120941 eV Total energy + Delta-G solvation = -4005.942010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57873 -39.74333 -37.45644 -36.78168 -36.01057 -33.16985 -32.79512 -31.69940 -30.11667 -29.55709 -28.98937 -27.34066 -26.09950 -24.75426 -23.81035 -22.70062 -22.26355 -21.78561 -20.63657 -20.06820 -18.55304 -17.63759 -17.24119 -16.98726 -16.70900 -15.93554 -15.61094 -15.41162 -14.91699 -14.73134 -14.54706 -14.07285 -14.04551 -13.65270 -13.54561 -13.44168 -13.17257 -13.04885 -12.72010 -12.52345 -12.40645 -12.15109 -12.02047 -11.75223 -11.62146 -11.56442 -11.42277 -11.11456 -10.94815 -10.92272 -10.83992 -10.78266 -10.71120 -10.47368 -10.07089 -9.76623 -9.49986 -9.11543 -8.89319 -8.55488 -8.34013 -8.21694 -6.71627 -5.55016 -2.95637 1.23645 1.37235 2.71162 2.99162 3.12886 3.46580 3.50397 3.51955 3.72031 4.16839 4.39490 4.47443 4.57815 4.59449 4.76782 4.79227 4.93383 5.01781 5.04318 5.15630 5.21233 5.31681 5.34387 5.36302 5.43556 5.45363 5.47528 5.58774 5.60626 5.64309 5.77326 5.79849 5.82714 5.92429 5.96788 6.06600 6.25930 6.30547 6.38115 6.48423 6.52733 6.56383 6.60717 6.66386 6.79162 7.09227 7.19129 7.53085 7.65942 7.72149 7.96207 8.40699 8.47836 9.31866 9.93176 10.58138 11.48873 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003999 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.610554 B = 6999.745777 C = 9250.361836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.103 3.897 4 N -0.604 5.604 5 C 0.516 3.484 6 O -0.489 6.489 7 C -0.103 4.103 8 H 0.114 0.886 9 C 0.069 3.931 10 O -0.302 6.302 11 C 0.104 3.896 12 C -0.142 4.142 13 C -0.085 4.085 14 C -0.147 4.147 15 C -0.044 4.044 16 C -0.148 4.148 17 C 0.136 3.864 18 H 0.088 0.912 19 C -0.158 4.158 20 C 0.158 3.842 21 N -0.595 5.595 22 C -0.216 4.216 23 H 0.074 0.926 24 C -0.011 4.011 25 N -0.923 5.923 26 Si 0.913 3.087 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.135 3.865 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.009 0.991 48 H 0.251 0.749 49 H 0.031 0.969 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.792 0.156 -12.457 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.020 4.020 4 N -0.337 5.337 5 C 0.301 3.699 6 O -0.361 6.361 7 C -0.124 4.124 8 H 0.132 0.868 9 C -0.006 4.006 10 O -0.216 6.216 11 C 0.060 3.940 12 C -0.161 4.161 13 C -0.103 4.103 14 C -0.165 4.165 15 C -0.062 4.062 16 C -0.149 4.149 17 C 0.033 3.967 18 H 0.106 0.894 19 C -0.197 4.197 20 C 0.033 3.967 21 N -0.321 5.321 22 C -0.345 4.345 23 H 0.092 0.908 24 C -0.207 4.207 25 N -0.572 5.572 26 Si 0.744 3.256 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.008 3.992 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.041 -0.033 -12.574 21.991 hybrid contribution 0.618 0.555 0.584 1.016 sum -17.423 0.522 -11.990 21.156 Atomic orbital electron populations 1.21723 0.95105 1.02050 1.01958 1.22049 0.95995 0.97236 1.03183 1.21746 0.80162 0.96929 1.03179 1.48004 1.06122 1.72928 1.06665 1.19929 0.88575 0.78033 0.83335 1.90837 1.13881 1.46661 1.84770 1.21626 0.98803 0.98214 0.93751 0.86807 1.23792 1.03151 0.95671 0.78029 1.86803 1.53139 1.55843 1.25829 1.19506 0.90099 0.89474 0.94967 1.20180 0.99018 1.01131 0.95770 1.20866 0.96206 0.94575 0.98617 1.21059 1.01565 1.01645 0.92229 1.20359 0.92829 0.94703 0.98285 1.20189 1.01579 0.99891 0.93230 1.22209 0.91429 0.98023 0.85059 0.89390 1.23480 0.97637 0.94979 1.03584 1.21836 0.96916 0.84463 0.93479 1.44277 1.06454 1.03512 1.77883 1.18992 0.87927 0.90491 1.37059 0.90804 1.24746 0.97910 0.95991 1.02003 1.69784 1.26636 1.07943 1.52848 0.86171 0.82641 0.78873 0.77932 1.21326 1.21597 1.21232 1.21448 0.87203 0.93477 0.97073 0.92647 0.92389 0.92418 0.91790 0.91056 0.90157 0.90460 0.89947 0.86973 0.85560 0.85218 0.85368 0.85668 0.93088 0.89563 0.87599 0.97350 0.93820 0.95108 0.96616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.15 -1.20 6.26 -26.74 -0.17 -1.37 16 3 C 0.10 0.97 5.32 -4.04 -0.02 0.95 16 4 N -0.60 -8.53 2.54 -164.03 -0.42 -8.95 16 5 C 0.52 8.17 5.84 -10.98 -0.06 8.11 16 6 O -0.49 -10.26 12.29 5.55 0.07 -10.20 16 7 C -0.10 -1.28 2.64 -91.56 -0.24 -1.52 16 8 H 0.11 1.13 6.33 -51.93 -0.33 0.81 16 9 C 0.07 0.76 6.73 38.06 0.26 1.01 16 10 O -0.30 -3.89 11.10 -20.14 -0.22 -4.11 16 11 C 0.10 1.43 7.04 -38.95 -0.27 1.15 16 12 C -0.14 -1.70 10.06 -39.30 -0.40 -2.10 16 13 C -0.08 -0.94 10.02 -39.67 -0.40 -1.34 16 14 C -0.15 -1.82 10.07 -39.52 -0.40 -2.22 16 15 C -0.04 -0.63 9.47 -39.72 -0.38 -1.01 16 16 C -0.15 -2.11 5.26 -104.10 -0.55 -2.66 16 17 C 0.14 2.40 3.45 -66.09 -0.23 2.18 16 18 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 19 C -0.16 -3.22 6.40 -24.58 -0.16 -3.38 16 20 C 0.16 4.05 5.89 -2.52 -0.01 4.03 16 21 N -0.60 -16.09 3.39 -170.07 -0.58 -16.67 16 22 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 23 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 25 N -0.92 -27.96 10.09 55.49 0.56 -27.40 16 26 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 C 0.14 3.00 6.52 -3.07 -0.02 2.98 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.06 0.54 6.43 -51.92 -0.33 0.21 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 37 H 0.08 0.58 5.71 -51.93 -0.30 0.29 16 38 H 0.08 0.99 7.91 -51.93 -0.41 0.57 16 39 H 0.11 0.85 7.34 -51.93 -0.38 0.47 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.95 5.64 -51.93 -0.29 1.66 16 46 H 0.11 3.09 5.87 -51.93 -0.30 2.79 16 47 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.03 0.73 6.43 -51.93 -0.33 0.40 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -34.91 389.93 -10.38 -45.29 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.71 Total: 0.90 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.93 Total: -2.66 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.43 Total: -53.02 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.16 Total: -14.31 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.91 -10.38 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317772020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.149 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds