Wall clock time and date at job start Wed Apr 1 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 N 1.46502 * 109.47010 * 185.14505 * 3 2 1 5 5 C 1.34778 * 119.99767 * 94.42425 * 4 3 2 6 6 O 1.21284 * 120.00163 * 184.92115 * 5 4 3 7 7 C 1.50701 * 120.00213 * 4.91311 * 5 4 3 8 8 H 1.09000 * 110.83251 * 35.84347 * 7 5 4 9 9 C 1.54716 * 110.94337 * 272.12491 * 7 5 4 10 10 O 1.43761 * 102.79095 * 216.44864 * 9 7 5 11 11 C 1.36126 * 109.29052 * 27.55399 * 10 9 7 12 12 C 1.39283 * 129.87762 * 161.44387 * 11 10 9 13 13 C 1.37934 * 120.24462 * 179.56277 * 12 11 10 14 14 C 1.38288 * 120.34975 * 0.05091 * 13 12 11 15 15 C 1.38351 * 119.76369 * 0.16088 * 14 13 12 16 16 C 1.37738 * 119.98083 * 359.96768 * 15 14 13 17 17 C 1.46500 * 120.00291 * 274.42037 * 4 3 2 18 18 H 1.08994 * 110.64198 * 1.69035 * 17 4 3 19 19 C 1.55159 * 110.71579 * 125.02385 * 17 4 3 20 20 C 1.54918 * 101.58028 * 153.86730 * 19 17 4 21 21 N 1.47429 * 104.82702 * 322.99140 * 20 19 17 22 22 C 1.36938 * 125.64150 * 204.16624 * 21 20 19 23 23 H 1.08001 * 119.99606 * 179.97438 * 22 21 20 24 24 C 1.38815 * 120.00263 * 359.95095 * 22 21 20 25 25 N 1.31612 * 120.00093 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47239 * 60.00218 * 26 24 22 28 28 H 1.48503 * 109.46960 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47487 * 300.00432 * 26 24 22 30 30 C 1.47012 * 108.70808 * 24.12852 * 21 20 19 31 31 H 1.09000 * 109.47672 * 59.99481 * 1 2 3 32 32 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46878 * 300.00073 * 1 2 3 34 34 H 1.09008 * 109.46878 * 239.99927 * 2 1 3 35 35 H 1.09006 * 109.47007 * 120.00683 * 2 1 3 36 36 H 1.09000 * 109.47291 * 65.15052 * 3 2 1 37 37 H 1.08998 * 109.47452 * 305.14759 * 3 2 1 38 38 H 1.08996 * 110.74563 * 334.77683 * 9 7 5 39 39 H 1.09002 * 110.74744 * 98.12413 * 9 7 5 40 40 H 1.07998 * 119.88479 * 359.57376 * 12 11 10 41 41 H 1.07998 * 119.82695 * 180.02562 * 13 12 11 42 42 H 1.07995 * 120.12054 * 180.13390 * 14 13 12 43 43 H 1.08003 * 120.01155 * 180.02562 * 15 14 13 44 44 H 1.08999 * 111.00461 * 271.94023 * 19 17 4 45 45 H 1.08999 * 111.00930 * 35.79490 * 19 17 4 46 46 H 1.08993 * 110.36603 * 204.15162 * 20 19 17 47 47 H 1.09001 * 110.45750 * 81.87285 * 20 19 17 48 48 H 0.96995 * 119.99980 * 179.97438 * 25 24 22 49 49 H 1.09001 * 109.88399 * 239.52240 * 30 21 20 50 50 H 1.08994 * 109.88913 * 118.35810 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4998 1.4442 -0.1239 5 6 4.0729 1.5698 -1.3372 6 8 5.2772 1.4819 -1.4511 7 6 3.2174 1.8193 -2.5525 8 1 2.3721 2.4618 -2.3063 9 6 2.7364 0.4863 -3.1734 10 8 2.7651 0.7634 -4.5837 11 6 3.7047 1.7156 -4.8359 12 6 4.3321 2.0564 -6.0318 13 6 5.2618 3.0749 -6.0630 14 6 5.5801 3.7659 -4.9083 15 6 4.9646 3.4307 -3.7155 16 6 4.0380 2.4122 -3.6816 17 6 4.3365 1.3096 1.0711 18 1 3.7189 1.1888 1.9610 19 6 5.3243 0.1228 0.9185 20 6 6.4786 0.5564 1.8564 21 7 6.5752 2.0176 1.6851 22 6 7.6905 2.7765 1.9202 23 1 7.6596 3.8447 1.7636 24 6 8.8607 2.1731 2.3601 25 7 8.8984 0.8714 2.5508 26 14 10.3818 3.2085 2.6813 27 1 10.0821 4.2166 3.7297 28 1 11.4897 2.3320 3.1392 29 1 10.7833 3.9002 1.4300 30 6 5.2763 2.5246 1.2194 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5140 0.8900 36 1 1.7540 1.9290 0.9325 37 1 1.6034 1.9822 -0.8403 38 1 3.4212 -0.3245 -2.9251 39 1 1.7234 0.2514 -2.8465 40 1 4.0898 1.5214 -6.9382 41 1 5.7439 3.3338 -6.9941 42 1 6.3069 4.5642 -4.9374 43 1 5.2100 3.9680 -2.8113 44 1 4.8722 -0.8083 1.2601 45 1 5.6706 0.0325 -0.1111 46 1 7.4107 0.0770 1.5575 47 1 6.2412 0.3107 2.8915 48 1 9.7162 0.4497 2.8578 49 1 5.3957 3.0207 0.2562 50 1 4.8672 3.2226 1.9499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317772020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:18 Heat of formation + Delta-G solvation = -17.181850 kcal Electronic energy + Delta-G solvation = -31673.975392 eV Core-core repulsion = 27667.120941 eV Total energy + Delta-G solvation = -4006.854451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.59285 -40.99314 -38.49654 -38.37281 -37.14364 -34.72945 -33.75308 -33.22319 -31.20071 -30.97027 -30.38718 -28.95870 -26.99211 -26.60281 -24.95673 -23.82647 -23.21607 -22.58445 -22.03073 -21.99843 -19.74570 -19.00092 -18.58782 -18.27164 -17.82955 -17.19417 -16.74594 -16.63447 -16.44764 -15.94964 -15.74244 -15.58215 -15.23176 -15.02916 -14.63610 -14.42870 -14.24432 -14.18357 -14.00076 -13.78478 -13.66656 -13.41564 -13.12788 -13.03883 -12.99363 -12.73617 -12.69680 -12.63115 -12.43324 -12.24278 -12.08159 -12.00972 -11.94237 -11.85453 -11.79198 -11.60480 -11.35450 -10.75872 -10.50014 -9.88514 -9.62429 -9.18836 -8.88363 -7.77977 -5.21955 0.27209 0.37953 1.41595 1.46509 1.51571 1.52722 1.86411 2.19102 2.48596 2.75180 3.17310 3.30724 3.45026 3.52423 3.72403 3.77773 3.88604 3.91479 4.05757 4.06386 4.18319 4.20380 4.24480 4.36350 4.39706 4.43366 4.47254 4.52796 4.62443 4.64373 4.68024 4.74247 4.76757 4.93048 4.96308 5.01378 5.02947 5.08049 5.27894 5.30956 5.32003 5.40655 5.41014 5.51844 5.53944 5.58610 5.62054 5.75530 5.78843 6.14617 6.29391 6.43420 7.09172 7.21252 7.77231 8.41148 9.23610 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003999 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.610554 B = 6999.745777 C = 9250.361836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.096 3.904 4 N -0.597 5.597 5 C 0.514 3.486 6 O -0.550 6.550 7 C -0.094 4.094 8 H 0.144 0.856 9 C 0.073 3.927 10 O -0.305 6.305 11 C 0.088 3.912 12 C -0.146 4.146 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.071 4.071 16 C -0.170 4.170 17 C 0.155 3.845 18 H 0.119 0.881 19 C -0.142 4.142 20 C 0.162 3.838 21 N -0.618 5.618 22 C -0.239 4.239 23 H 0.074 0.926 24 C -0.067 4.067 25 N -0.949 5.949 26 Si 0.981 3.019 27 H -0.274 1.274 28 H -0.289 1.289 29 H -0.282 1.282 30 C 0.133 3.867 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.064 0.936 47 H -0.005 1.005 48 H 0.247 0.753 49 H 0.012 0.988 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 0.486 -13.575 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C -0.025 4.025 4 N -0.328 5.328 5 C 0.302 3.698 6 O -0.427 6.427 7 C -0.115 4.115 8 H 0.162 0.838 9 C -0.002 4.002 10 O -0.220 6.220 11 C 0.043 3.957 12 C -0.164 4.164 13 C -0.097 4.097 14 C -0.173 4.173 15 C -0.089 4.089 16 C -0.171 4.171 17 C 0.051 3.949 18 H 0.136 0.864 19 C -0.181 4.181 20 C 0.036 3.964 21 N -0.344 5.344 22 C -0.368 4.368 23 H 0.091 0.909 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.808 3.192 27 H -0.199 1.199 28 H -0.215 1.215 29 H -0.208 1.208 30 C 0.006 3.994 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.182 0.818 42 H 0.161 0.839 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.013 0.987 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.849 0.306 -13.693 24.945 hybrid contribution 1.468 0.475 0.893 1.783 sum -19.381 0.781 -12.799 23.239 Atomic orbital electron populations 1.21691 0.93130 1.02590 1.02947 1.22004 0.97551 0.95914 1.02620 1.22149 0.76727 0.98483 1.05174 1.48016 1.07955 1.71894 1.04959 1.20536 0.88158 0.76584 0.84524 1.90818 1.16727 1.49379 1.85769 1.21656 0.98667 0.99578 0.91600 0.83835 1.23962 1.05009 0.94115 0.77125 1.86793 1.52847 1.55624 1.26693 1.19782 0.90718 0.89811 0.95405 1.20604 0.98487 1.01130 0.96176 1.21263 0.95539 0.93563 0.99360 1.21344 1.01586 1.02239 0.92160 1.20413 0.94302 0.95733 0.98450 1.20440 1.02118 1.00148 0.94415 1.21899 0.91183 0.94144 0.87718 0.86357 1.23212 0.96657 0.97379 1.00823 1.21581 0.97104 0.83977 0.93691 1.44569 1.07726 1.04166 1.77931 1.19357 0.89354 0.90951 1.37156 0.90857 1.25630 1.00839 0.97276 1.02139 1.70061 1.26953 1.09411 1.53421 0.85125 0.78636 0.77437 0.77972 1.19931 1.21526 1.20824 1.21589 0.86399 0.95505 0.95864 0.91187 0.92124 0.91953 0.91960 0.92200 0.88674 0.87891 0.91461 0.82846 0.83212 0.81781 0.83946 0.87771 0.90134 0.91867 0.91818 0.98715 0.94369 0.97000 0.95774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.14 -1.85 6.26 30.59 0.19 -1.66 16 3 C 0.10 1.47 5.32 86.38 0.46 1.93 16 4 N -0.60 -15.98 2.54 -791.25 -2.01 -17.98 16 5 C 0.51 16.22 5.84 87.66 0.51 16.73 16 6 O -0.55 -24.16 12.29 -3.04 -0.04 -24.20 16 7 C -0.09 -2.22 2.64 -11.40 -0.03 -2.25 16 8 H 0.14 2.43 6.33 -2.39 -0.02 2.42 16 9 C 0.07 1.44 6.73 72.57 0.49 1.93 16 10 O -0.31 -7.27 11.10 -94.99 -1.05 -8.32 16 11 C 0.09 2.30 7.04 22.68 0.16 2.46 16 12 C -0.15 -3.23 10.06 22.45 0.23 -3.01 16 13 C -0.08 -1.63 10.02 22.21 0.22 -1.41 16 14 C -0.16 -3.83 10.07 22.31 0.22 -3.61 16 15 C -0.07 -2.12 9.47 22.18 0.21 -1.91 16 16 C -0.17 -4.85 5.26 -19.53 -0.10 -4.95 16 17 C 0.15 5.37 3.45 46.18 0.16 5.53 16 18 H 0.12 3.44 7.94 -2.39 -0.02 3.42 16 19 C -0.14 -5.87 6.40 31.99 0.20 -5.67 16 20 C 0.16 8.64 5.89 86.86 0.51 9.15 16 21 N -0.62 -34.68 3.39 -691.99 -2.35 -37.03 16 22 C -0.24 -14.52 10.27 84.03 0.86 -13.66 16 23 H 0.07 4.31 7.83 -2.91 -0.02 4.29 16 24 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 25 N -0.95 -59.83 10.09 21.65 0.22 -59.61 16 26 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 27 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 30 C 0.13 6.00 6.52 86.73 0.57 6.57 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.85 6.43 -2.38 -0.02 0.83 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.09 1.25 8.05 -2.39 -0.02 1.24 16 37 H 0.10 1.09 5.71 -2.39 -0.01 1.08 16 38 H 0.07 1.54 7.91 -2.39 -0.02 1.52 16 39 H 0.15 1.69 7.34 -2.39 -0.02 1.67 16 40 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.10 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.06 2.97 5.64 -2.39 -0.01 2.96 16 46 H 0.06 3.95 5.87 -2.39 -0.01 3.93 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 49 H 0.01 0.59 6.43 -2.39 -0.02 0.57 16 50 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -81.91 389.93 3.78 -78.13 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.94 Total: 16.52 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.04 Total: 2.12 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -4.14 Total: -114.63 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.09 Total: -32.52 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -81.91 3.78 -78.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317772020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.951 kcal (2) G-P(sol) polarization free energy of solvation -81.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds