Wall clock time and date at job start Wed Apr 1 2020 04:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 N 1.46497 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00097 * 90.00408 * 4 3 2 6 6 O 1.21279 * 120.00160 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99797 * 359.97438 * 5 4 3 8 8 H 1.08989 * 110.85928 * 303.72569 * 7 5 4 9 9 C 1.54713 * 110.93295 * 67.44532 * 7 5 4 10 10 O 1.43783 * 102.77276 * 92.93833 * 9 7 5 11 11 C 1.36135 * 109.20611 * 27.88966 * 10 9 7 12 12 C 1.39285 * 129.89574 * 161.19624 * 11 10 9 13 13 C 1.37928 * 120.23576 * 179.02919 * 12 11 10 14 14 C 1.38284 * 120.35092 * 359.97438 * 13 12 11 15 15 C 1.38349 * 119.76940 * 0.21837 * 14 13 12 16 16 C 1.37737 * 119.97839 * 359.97151 * 15 14 13 17 17 C 1.46500 * 119.99909 * 269.99945 * 4 3 2 18 18 H 1.09004 * 110.88573 * 356.12424 * 17 4 3 19 19 C 1.55156 * 111.00039 * 119.99872 * 17 4 3 20 20 C 1.54330 * 102.94240 * 153.57564 * 19 17 4 21 21 N 1.47018 * 107.26755 * 337.80977 * 20 19 17 22 22 C 1.36942 * 125.64637 * 178.98082 * 21 20 19 23 23 H 1.07996 * 119.99843 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.99918 * 359.97438 * 22 21 20 25 25 N 1.31618 * 120.00076 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00009 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47058 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47069 * 119.99526 * 26 24 22 29 29 H 1.48496 * 109.47116 * 239.99495 * 26 24 22 30 30 C 1.47415 * 108.70716 * 358.93783 * 21 20 19 31 31 H 1.09002 * 109.46973 * 59.99732 * 1 2 3 32 32 H 1.08999 * 109.46774 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47266 * 299.99609 * 1 2 3 34 34 H 1.09007 * 109.47005 * 240.00329 * 2 1 3 35 35 H 1.08996 * 109.47391 * 120.00391 * 2 1 3 36 36 H 1.09004 * 109.46654 * 59.99749 * 3 2 1 37 37 H 1.08996 * 109.47243 * 300.00481 * 3 2 1 38 38 H 1.08994 * 110.75069 * 211.25654 * 9 7 5 39 39 H 1.08994 * 110.75163 * 334.61638 * 9 7 5 40 40 H 1.07994 * 119.87756 * 359.04385 * 12 11 10 41 41 H 1.08004 * 119.81927 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.11461 * 180.23613 * 14 13 12 43 43 H 1.08000 * 120.01003 * 179.97438 * 15 14 13 44 44 H 1.08997 * 110.72462 * 271.93975 * 19 17 4 45 45 H 1.09000 * 110.72253 * 35.21655 * 19 17 4 46 46 H 1.09001 * 109.88101 * 97.22510 * 20 19 17 47 47 H 1.08991 * 109.88859 * 218.23482 * 20 19 17 48 48 H 0.96999 * 120.00211 * 179.97438 * 25 24 22 49 49 H 1.09001 * 110.37037 * 265.29378 * 30 21 20 50 50 H 1.09005 * 110.37109 * 142.96504 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 5.3912 1.4423 -1.1686 7 6 3.4243 1.4424 -2.4729 8 1 2.7409 0.5951 -2.5259 9 6 2.6673 2.7766 -2.6741 10 8 3.6062 3.5646 -3.4257 11 6 4.4030 2.7364 -4.1554 12 6 5.1960 3.0105 -5.2672 13 6 5.9488 2.0106 -5.8469 14 6 5.9238 0.7283 -5.3300 15 6 5.1356 0.4469 -4.2283 16 6 4.3801 1.4429 -3.6502 17 6 4.2380 1.4423 1.2678 18 1 3.5527 1.5110 2.1127 19 6 5.1433 0.1879 1.3867 20 6 6.2671 0.6610 2.3328 21 7 6.3066 2.1290 2.2636 22 6 7.1542 2.9388 2.9715 23 1 7.1044 4.0107 2.8494 24 6 8.0773 2.3819 3.8459 25 7 8.1375 1.0756 3.9950 26 14 9.2340 3.4865 4.8110 27 1 8.9664 4.9057 4.4655 28 1 9.0160 3.2811 6.2655 29 1 10.6394 3.1508 4.4689 30 6 5.2834 2.5849 1.3053 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6766 1.9562 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 1.7519 2.6190 -3.2443 39 1 2.4500 3.2459 -1.7147 40 1 5.2216 4.0095 -5.6766 41 1 6.5616 2.2307 -6.7086 42 1 6.5177 -0.0509 -5.7846 43 1 5.1129 -0.5534 -3.8217 44 1 4.5936 -0.6442 1.8267 45 1 5.5493 -0.0884 0.4136 46 1 6.0510 0.3436 3.3529 47 1 7.2222 0.2466 2.0104 48 1 8.7828 0.6864 4.6058 49 1 5.7244 2.7279 0.3188 50 1 4.8225 3.5093 1.6534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:25 Heat of formation + Delta-G solvation = 4.355834 kcal Electronic energy + Delta-G solvation = -31589.714966 eV Core-core repulsion = 27583.794458 eV Total energy + Delta-G solvation = -4005.920507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67261 -39.68468 -37.48765 -36.73962 -36.05419 -33.15236 -32.85579 -31.70573 -30.15513 -29.63719 -28.91789 -27.30194 -26.19335 -24.62545 -23.97287 -22.71968 -22.20672 -21.74377 -20.79969 -19.97020 -18.89005 -17.58752 -17.13019 -16.75929 -16.72335 -16.08294 -15.75511 -15.55470 -14.80764 -14.58740 -14.51378 -14.21384 -13.97462 -13.83138 -13.59176 -13.41210 -13.13859 -12.94313 -12.74979 -12.44920 -12.33121 -12.14094 -12.01563 -11.86021 -11.81578 -11.65867 -11.39948 -11.25941 -10.95180 -10.89033 -10.83623 -10.78589 -10.60527 -10.24474 -10.00303 -9.86732 -9.58959 -9.19199 -8.92105 -8.54384 -8.32879 -8.22678 -6.67346 -5.60775 -2.92914 1.19543 1.33480 2.68817 3.02480 3.13077 3.46238 3.51642 3.54273 3.66314 4.07525 4.34267 4.45077 4.60225 4.63902 4.67486 4.77376 4.93781 4.96008 5.04538 5.08200 5.15658 5.21007 5.29920 5.37842 5.43103 5.45669 5.51475 5.53261 5.58102 5.66033 5.78031 5.81048 5.86825 5.90322 5.94782 6.05454 6.22158 6.24494 6.32742 6.41453 6.49498 6.52934 6.63134 6.71065 6.77340 7.07406 7.26863 7.58056 7.67545 7.75940 7.93043 8.35391 8.41362 9.32882 9.93338 10.60288 11.51141 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.003617 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.666443 B = 7738.827137 C = 9358.253811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.100 3.900 4 N -0.604 5.604 5 C 0.518 3.482 6 O -0.494 6.494 7 C -0.102 4.102 8 H 0.118 0.882 9 C 0.060 3.940 10 O -0.299 6.299 11 C 0.112 3.888 12 C -0.141 4.141 13 C -0.083 4.083 14 C -0.149 4.149 15 C -0.052 4.052 16 C -0.146 4.146 17 C 0.132 3.868 18 H 0.091 0.909 19 C -0.151 4.151 20 C 0.185 3.815 21 N -0.601 5.601 22 C -0.221 4.221 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.923 5.923 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.124 3.876 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.041 0.959 48 H 0.250 0.750 49 H 0.049 0.951 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.643 -2.522 -17.638 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.023 4.023 4 N -0.337 5.337 5 C 0.304 3.696 6 O -0.367 6.367 7 C -0.123 4.123 8 H 0.136 0.864 9 C -0.016 4.016 10 O -0.212 6.212 11 C 0.067 3.933 12 C -0.159 4.159 13 C -0.101 4.101 14 C -0.168 4.168 15 C -0.070 4.070 16 C -0.147 4.147 17 C 0.029 3.971 18 H 0.109 0.891 19 C -0.191 4.191 20 C 0.060 3.940 21 N -0.328 5.328 22 C -0.350 4.350 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.571 5.571 26 Si 0.742 3.258 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.003 4.003 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.802 -2.276 -17.441 24.324 hybrid contribution 0.478 0.248 0.787 0.954 sum -16.324 -2.027 -16.654 23.408 Atomic orbital electron populations 1.21712 0.95125 1.02016 1.01922 1.21998 0.95984 0.97219 1.03116 1.21843 0.80084 0.97112 1.03261 1.47945 1.05946 1.73703 1.06077 1.19980 0.88062 0.77473 0.84094 1.90788 1.13201 1.46295 1.86452 1.21637 0.97280 1.00716 0.92700 0.86442 1.23963 0.91610 0.88888 0.97093 1.86872 1.45514 1.31988 1.56867 1.19546 0.93141 0.88692 0.91964 1.20216 1.00096 1.00673 0.94954 1.20858 0.97445 0.92468 0.99349 1.21006 1.00781 0.97147 0.97817 1.20273 0.93875 0.98406 0.94440 1.20149 1.02842 0.94986 0.96749 1.22432 0.93323 0.98427 0.82910 0.89074 1.23212 0.98290 0.95860 1.01700 1.21035 0.93953 0.83563 0.95415 1.44312 1.38846 1.02193 1.47462 1.19104 1.10264 0.89363 1.16227 0.90532 1.24777 0.99673 0.95964 1.00202 1.69981 1.38341 1.08598 1.40210 0.86048 0.80775 0.79465 0.79545 1.20565 1.21849 1.21817 1.21926 0.89611 0.93528 0.95266 0.92693 0.92452 0.92388 0.91900 0.90995 0.89839 0.90645 0.89424 0.86962 0.85501 0.85210 0.85465 0.85906 0.92763 0.91082 0.93815 0.94040 0.93955 0.93318 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.14 -1.20 6.23 -26.73 -0.17 -1.36 16 3 C 0.10 0.94 4.86 -4.05 -0.02 0.92 16 4 N -0.60 -8.59 2.56 -163.68 -0.42 -9.01 16 5 C 0.52 8.22 6.28 -10.98 -0.07 8.16 16 6 O -0.49 -10.43 12.18 5.56 0.07 -10.36 16 7 C -0.10 -1.21 2.61 -91.56 -0.24 -1.45 16 8 H 0.12 1.05 7.09 -51.93 -0.37 0.68 16 9 C 0.06 0.61 6.25 38.06 0.24 0.84 16 10 O -0.30 -4.14 11.11 -20.17 -0.22 -4.36 16 11 C 0.11 1.56 7.03 -38.95 -0.27 1.28 16 12 C -0.14 -1.71 10.06 -39.31 -0.40 -2.11 16 13 C -0.08 -0.89 10.02 -39.68 -0.40 -1.29 16 14 C -0.15 -1.65 10.07 -39.52 -0.40 -2.05 16 15 C -0.05 -0.65 10.03 -39.72 -0.40 -1.05 16 16 C -0.15 -1.98 4.93 -104.10 -0.51 -2.49 16 17 C 0.13 2.41 3.55 -65.78 -0.23 2.18 16 18 H 0.09 1.54 7.86 -51.93 -0.41 1.13 16 19 C -0.15 -3.09 6.33 -24.89 -0.16 -3.25 16 20 C 0.19 4.84 5.37 -3.06 -0.02 4.82 16 21 N -0.60 -16.54 3.39 -170.08 -0.58 -17.12 16 22 C -0.22 -6.55 10.28 -15.06 -0.15 -6.71 16 23 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 24 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -28.33 10.31 55.49 0.57 -27.76 16 26 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 C 0.12 2.84 6.58 -2.53 -0.02 2.82 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.52 7.21 -51.92 -0.37 0.15 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 37 H 0.08 0.54 4.46 -51.93 -0.23 0.31 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 1.05 6.28 -51.93 -0.33 0.72 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.54 6.25 -51.93 -0.32 1.22 16 46 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 47 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.05 1.23 5.53 -51.93 -0.29 0.95 16 50 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -36.40 389.16 -10.38 -46.78 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.70 Total: -0.42 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.94 Total: -1.70 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.42 Total: -53.89 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.16 Total: -14.72 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.40 -10.38 -46.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.137 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds