Wall clock time and date at job start Wed Apr 1 2020 04:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 N 1.46497 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00097 * 90.00408 * 4 3 2 6 6 O 1.21279 * 120.00160 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99797 * 359.97438 * 5 4 3 8 8 H 1.08989 * 110.85928 * 303.72569 * 7 5 4 9 9 C 1.54713 * 110.93295 * 67.44532 * 7 5 4 10 10 O 1.43783 * 102.77276 * 92.93833 * 9 7 5 11 11 C 1.36135 * 109.20611 * 27.88966 * 10 9 7 12 12 C 1.39285 * 129.89574 * 161.19624 * 11 10 9 13 13 C 1.37928 * 120.23576 * 179.02919 * 12 11 10 14 14 C 1.38284 * 120.35092 * 359.97438 * 13 12 11 15 15 C 1.38349 * 119.76940 * 0.21837 * 14 13 12 16 16 C 1.37737 * 119.97839 * 359.97151 * 15 14 13 17 17 C 1.46500 * 119.99909 * 269.99945 * 4 3 2 18 18 H 1.09004 * 110.88573 * 356.12424 * 17 4 3 19 19 C 1.55156 * 111.00039 * 119.99872 * 17 4 3 20 20 C 1.54330 * 102.94240 * 153.57564 * 19 17 4 21 21 N 1.47018 * 107.26755 * 337.80977 * 20 19 17 22 22 C 1.36942 * 125.64637 * 178.98082 * 21 20 19 23 23 H 1.07996 * 119.99843 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.99918 * 359.97438 * 22 21 20 25 25 N 1.31618 * 120.00076 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00009 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47058 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47069 * 119.99526 * 26 24 22 29 29 H 1.48496 * 109.47116 * 239.99495 * 26 24 22 30 30 C 1.47415 * 108.70716 * 358.93783 * 21 20 19 31 31 H 1.09002 * 109.46973 * 59.99732 * 1 2 3 32 32 H 1.08999 * 109.46774 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47266 * 299.99609 * 1 2 3 34 34 H 1.09007 * 109.47005 * 240.00329 * 2 1 3 35 35 H 1.08996 * 109.47391 * 120.00391 * 2 1 3 36 36 H 1.09004 * 109.46654 * 59.99749 * 3 2 1 37 37 H 1.08996 * 109.47243 * 300.00481 * 3 2 1 38 38 H 1.08994 * 110.75069 * 211.25654 * 9 7 5 39 39 H 1.08994 * 110.75163 * 334.61638 * 9 7 5 40 40 H 1.07994 * 119.87756 * 359.04385 * 12 11 10 41 41 H 1.08004 * 119.81927 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.11461 * 180.23613 * 14 13 12 43 43 H 1.08000 * 120.01003 * 179.97438 * 15 14 13 44 44 H 1.08997 * 110.72462 * 271.93975 * 19 17 4 45 45 H 1.09000 * 110.72253 * 35.21655 * 19 17 4 46 46 H 1.09001 * 109.88101 * 97.22510 * 20 19 17 47 47 H 1.08991 * 109.88859 * 218.23482 * 20 19 17 48 48 H 0.96999 * 120.00211 * 179.97438 * 25 24 22 49 49 H 1.09001 * 110.37037 * 265.29378 * 30 21 20 50 50 H 1.09005 * 110.37109 * 142.96504 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 5.3912 1.4423 -1.1686 7 6 3.4243 1.4424 -2.4729 8 1 2.7409 0.5951 -2.5259 9 6 2.6673 2.7766 -2.6741 10 8 3.6062 3.5646 -3.4257 11 6 4.4030 2.7364 -4.1554 12 6 5.1960 3.0105 -5.2672 13 6 5.9488 2.0106 -5.8469 14 6 5.9238 0.7283 -5.3300 15 6 5.1356 0.4469 -4.2283 16 6 4.3801 1.4429 -3.6502 17 6 4.2380 1.4423 1.2678 18 1 3.5527 1.5110 2.1127 19 6 5.1433 0.1879 1.3867 20 6 6.2671 0.6610 2.3328 21 7 6.3066 2.1290 2.2636 22 6 7.1542 2.9388 2.9715 23 1 7.1044 4.0107 2.8494 24 6 8.0773 2.3819 3.8459 25 7 8.1375 1.0756 3.9950 26 14 9.2340 3.4865 4.8110 27 1 8.9664 4.9057 4.4655 28 1 9.0160 3.2811 6.2655 29 1 10.6394 3.1508 4.4689 30 6 5.2834 2.5849 1.3053 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6766 1.9562 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 1.7519 2.6190 -3.2443 39 1 2.4500 3.2459 -1.7147 40 1 5.2216 4.0095 -5.6766 41 1 6.5616 2.2307 -6.7086 42 1 6.5177 -0.0509 -5.7846 43 1 5.1129 -0.5534 -3.8217 44 1 4.5936 -0.6442 1.8267 45 1 5.5493 -0.0884 0.4136 46 1 6.0510 0.3436 3.3529 47 1 7.2222 0.2466 2.0104 48 1 8.7828 0.6864 4.6058 49 1 5.7244 2.7279 0.3188 50 1 4.8225 3.5093 1.6534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:23 Heat of formation + Delta-G solvation = -18.336855 kcal Electronic energy + Delta-G solvation = -31590.698995 eV Core-core repulsion = 27583.794458 eV Total energy + Delta-G solvation = -4006.904536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.64356 -40.92662 -38.51752 -38.31730 -37.18454 -34.73312 -33.76158 -33.23423 -31.20927 -30.98113 -30.34685 -28.93405 -27.08662 -26.55619 -24.98691 -23.77102 -23.19262 -22.49348 -22.20863 -21.90541 -20.08585 -19.00029 -18.53987 -17.96686 -17.73562 -17.17103 -16.99576 -16.65889 -16.43177 -15.87179 -15.71875 -15.53324 -15.31096 -14.88635 -14.65019 -14.39790 -14.37793 -14.22605 -13.97666 -13.83468 -13.66411 -13.57262 -13.01057 -12.99875 -12.81923 -12.80813 -12.69944 -12.62494 -12.32796 -12.20636 -12.02523 -12.00958 -11.97863 -11.86319 -11.75892 -11.68799 -11.41296 -10.75225 -10.56905 -9.86504 -9.66614 -9.14479 -8.88002 -7.87591 -5.23645 0.29400 0.42295 1.41637 1.44426 1.53285 1.54694 1.87664 2.26870 2.47681 2.75239 3.15520 3.29853 3.48658 3.54034 3.68492 3.83579 3.88911 3.96377 4.03089 4.12100 4.18529 4.20717 4.23569 4.35733 4.38237 4.43630 4.50401 4.57976 4.60632 4.64170 4.67943 4.70863 4.75846 4.89502 4.97931 4.99853 5.05348 5.09201 5.27865 5.32167 5.35192 5.39086 5.43728 5.52492 5.54550 5.61219 5.65371 5.66833 5.73881 6.15845 6.18688 6.44092 7.06528 7.20898 7.73393 8.39197 9.23137 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.003617 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.666443 B = 7738.827137 C = 9358.253811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.093 3.907 4 N -0.596 5.596 5 C 0.513 3.487 6 O -0.557 6.557 7 C -0.092 4.092 8 H 0.152 0.848 9 C 0.058 3.942 10 O -0.323 6.323 11 C 0.087 3.913 12 C -0.156 4.156 13 C -0.083 4.083 14 C -0.154 4.154 15 C -0.071 4.071 16 C -0.167 4.167 17 C 0.154 3.846 18 H 0.114 0.886 19 C -0.134 4.134 20 C 0.196 3.804 21 N -0.622 5.622 22 C -0.245 4.245 23 H 0.078 0.922 24 C -0.066 4.066 25 N -0.952 5.952 26 Si 0.982 3.018 27 H -0.267 1.267 28 H -0.284 1.284 29 H -0.293 1.293 30 C 0.121 3.879 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.020 0.980 47 H -0.007 1.007 48 H 0.247 0.753 49 H 0.025 0.975 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.264 -2.104 -18.740 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.028 4.028 4 N -0.328 5.328 5 C 0.301 3.699 6 O -0.434 6.434 7 C -0.113 4.113 8 H 0.169 0.831 9 C -0.017 4.017 10 O -0.237 6.237 11 C 0.042 3.958 12 C -0.174 4.174 13 C -0.100 4.100 14 C -0.172 4.172 15 C -0.089 4.089 16 C -0.168 4.168 17 C 0.050 3.950 18 H 0.132 0.868 19 C -0.173 4.173 20 C 0.070 3.930 21 N -0.349 5.349 22 C -0.374 4.374 23 H 0.096 0.904 24 C -0.259 4.259 25 N -0.601 5.601 26 Si 0.810 3.190 27 H -0.191 1.191 28 H -0.211 1.211 29 H -0.220 1.220 30 C -0.005 4.005 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.146 0.854 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.011 0.989 48 H 0.057 0.943 49 H 0.043 0.957 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.507 -1.850 -18.563 26.991 hybrid contribution 1.328 0.123 1.065 1.707 sum -18.179 -1.727 -17.498 25.291 Atomic orbital electron populations 1.21683 0.93150 1.02518 1.02967 1.21945 0.97552 0.95967 1.02445 1.22244 0.76536 0.98589 1.05410 1.47954 1.07926 1.72786 1.04145 1.20780 0.87623 0.75833 0.85630 1.90767 1.16115 1.49099 1.87440 1.21660 0.97122 1.03105 0.89429 0.83091 1.24295 0.92112 0.87318 0.97941 1.86818 1.46367 1.33187 1.57351 1.19875 0.94043 0.89016 0.92856 1.20591 1.00065 1.01812 0.94938 1.21260 0.96961 0.91931 0.99881 1.21385 1.00383 0.98107 0.97356 1.20559 0.94360 0.98761 0.95200 1.20426 1.03759 0.95176 0.97487 1.22026 0.92724 0.94513 0.85777 0.86782 1.22975 0.97042 0.97774 0.99534 1.20753 0.93790 0.83196 0.95233 1.44622 1.39732 1.02702 1.47832 1.19486 1.11237 0.89913 1.16736 0.90410 1.25692 1.01319 0.97493 1.01365 1.70210 1.38858 1.10334 1.40674 0.84956 0.77920 0.78170 0.77955 1.19110 1.21085 1.22025 1.21987 0.89923 0.95707 0.92896 0.90918 0.92284 0.92107 0.91764 0.92643 0.88528 0.87746 0.85182 0.86250 0.84254 0.82180 0.83143 0.85406 0.89787 0.92502 0.96218 0.98922 0.94335 0.95711 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.14 -1.86 6.23 30.59 0.19 -1.67 16 3 C 0.09 1.42 4.86 86.38 0.42 1.84 16 4 N -0.60 -16.03 2.56 -790.14 -2.02 -18.05 16 5 C 0.51 15.99 6.28 87.66 0.55 16.54 16 6 O -0.56 -24.32 12.18 -3.02 -0.04 -24.35 16 7 C -0.09 -2.01 2.61 -11.40 -0.03 -2.04 16 8 H 0.15 2.18 7.09 -2.39 -0.02 2.17 16 9 C 0.06 1.01 6.25 72.57 0.45 1.46 16 10 O -0.32 -8.63 11.11 -95.09 -1.06 -9.68 16 11 C 0.09 2.38 7.03 22.68 0.16 2.54 16 12 C -0.16 -3.69 10.06 22.45 0.23 -3.46 16 13 C -0.08 -1.65 10.02 22.21 0.22 -1.43 16 14 C -0.15 -3.26 10.07 22.31 0.22 -3.04 16 15 C -0.07 -1.75 10.03 22.18 0.22 -1.53 16 16 C -0.17 -4.43 4.93 -19.53 -0.10 -4.52 16 17 C 0.15 5.52 3.55 46.38 0.16 5.69 16 18 H 0.11 3.61 7.86 -2.38 -0.02 3.59 16 19 C -0.13 -5.57 6.33 31.78 0.20 -5.37 16 20 C 0.20 10.72 5.37 86.73 0.47 11.19 16 21 N -0.62 -35.55 3.39 -692.01 -2.35 -37.90 16 22 C -0.24 -14.96 10.28 84.03 0.86 -14.09 16 23 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 24 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 25 N -0.95 -60.68 10.31 21.65 0.22 -60.46 16 26 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 29 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 30 C 0.12 5.68 6.58 86.86 0.57 6.26 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.85 7.21 -2.38 -0.02 0.83 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 1.29 7.93 -2.38 -0.02 1.28 16 37 H 0.10 1.02 4.46 -2.39 -0.01 1.01 16 38 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.86 6.28 -2.39 -0.02 1.84 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 43 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.06 2.54 6.25 -2.39 -0.01 2.53 16 46 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 47 H -0.01 -0.48 7.50 -2.39 -0.02 -0.49 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.03 1.32 5.53 -2.39 -0.01 1.31 16 50 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -85.66 389.16 3.71 -81.94 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.94 Total: 13.71 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.99 Total: 4.31 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -4.14 Total: -116.41 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.09 Total: -34.04 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -85.66 3.71 -81.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.605 kcal (2) G-P(sol) polarization free energy of solvation -85.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds