Wall clock time and date at job start Wed Apr 1 2020 02:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 6 6 C 1.34777 * 120.00201 * 204.99887 * 5 3 2 7 7 O 1.21348 * 119.99713 * 0.02562 * 6 5 3 8 8 C 1.49451 * 120.00411 * 179.97438 * 6 5 3 9 9 O 1.21348 * 119.99876 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99816 * 180.02562 * 8 6 5 11 11 C 1.46506 * 119.99743 * 180.02562 * 10 8 6 12 12 H 1.08993 * 109.46966 * 324.99876 * 11 10 8 13 13 C 1.53001 * 109.47139 * 205.00323 * 11 10 8 14 14 C 1.50701 * 109.47389 * 64.99625 * 13 11 10 15 15 H 1.07998 * 119.99751 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00363 * 180.02562 * 14 13 11 17 17 N 1.31505 * 120.00188 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99544 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47484 * 89.99992 * 18 16 14 20 20 H 1.48506 * 109.46960 * 210.00178 * 18 16 14 21 21 H 1.48497 * 109.47595 * 329.99463 * 18 16 14 22 22 C 1.50697 * 109.47173 * 85.00338 * 11 10 8 23 23 C 1.38235 * 120.00207 * 39.72150 * 22 11 10 24 24 C 1.38237 * 120.00030 * 179.78474 * 23 22 11 25 25 C 1.38233 * 119.99944 * 0.45044 * 24 23 22 26 26 C 1.38233 * 120.00056 * 359.80804 * 25 24 23 27 27 C 1.38238 * 120.00175 * 359.97438 * 26 25 24 28 28 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 29 29 C 1.52996 * 117.49856 * 248.74103 * 28 3 2 30 30 C 1.53003 * 117.49375 * 180.08386 * 28 3 2 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 0.97005 * 120.00681 * 25.00338 * 5 3 2 37 37 H 0.96999 * 120.00658 * 0.02562 * 10 8 6 38 38 H 1.08991 * 109.47183 * 185.00028 * 13 11 10 39 39 H 1.09004 * 109.46746 * 304.99867 * 13 11 10 40 40 H 0.97002 * 120.00521 * 180.02562 * 17 16 14 41 41 H 1.08002 * 119.99888 * 0.02562 * 23 22 11 42 42 H 1.07997 * 119.99760 * 180.27643 * 24 23 22 43 43 H 1.07996 * 120.00193 * 179.82973 * 25 24 23 44 44 H 1.07997 * 120.00643 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00177 * 180.02562 * 27 26 25 46 46 H 1.09003 * 115.55093 * 34.41512 * 28 3 2 47 47 H 1.09005 * 117.49696 * 0.02562 * 29 28 3 48 48 H 1.09002 * 117.49922 * 145.01659 * 29 28 3 49 49 H 1.09004 * 117.49178 * 214.97280 * 30 28 3 50 50 H 1.08993 * 117.50410 * 0.02562 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 1.5256 3.4384 1.2995 7 8 1.7320 4.1032 0.3055 8 6 1.1296 4.1066 2.5763 9 8 0.9227 3.4419 3.5702 10 7 1.0023 5.4475 2.6239 11 6 0.6147 6.1026 3.8757 12 1 -0.0860 5.4667 4.4166 13 6 -0.0505 7.4448 3.5642 14 6 -1.3407 7.2060 2.8230 15 1 -1.6550 6.1978 2.5970 16 6 -2.1199 8.2747 2.4333 17 7 -3.2460 8.0664 1.7869 18 14 -1.5757 10.0186 2.8235 19 1 -0.7433 10.5385 1.7092 20 1 -2.7708 10.8835 2.9940 21 1 -0.7808 10.0202 4.0778 22 6 1.8399 6.3336 4.7221 23 6 3.0225 6.7371 4.1308 24 6 4.1452 6.9533 4.9078 25 6 4.0878 6.7570 6.2749 26 6 2.9067 6.3484 6.8656 27 6 1.7828 6.1365 6.0892 28 6 3.5649 1.4444 -0.1257 29 6 4.3734 1.9003 1.0905 30 6 4.2706 2.8018 -0.1423 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.4871 1.5662 2.0463 37 1 1.1673 5.9789 1.8293 38 1 -0.2585 7.9718 4.4953 39 1 0.6170 8.0465 2.9473 40 1 -3.7940 8.8182 1.5124 41 1 3.0682 6.8872 3.0622 42 1 5.0679 7.2728 4.4464 43 1 4.9657 6.9232 6.8816 44 1 2.8619 6.1946 7.9336 45 1 0.8599 5.8176 6.5507 46 1 3.9868 0.6501 -0.7416 47 1 3.8190 2.1986 1.9804 48 1 5.3274 1.4062 1.2747 49 1 5.1572 2.9003 -0.7688 50 1 3.6488 3.6934 -0.0633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331008673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:48 Heat of formation + Delta-G solvation = -27.529975 kcal Electronic energy + Delta-G solvation = -30775.640829 eV Core-core repulsion = 26768.337649 eV Total energy + Delta-G solvation = -4007.303180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74547 -39.47579 -38.41508 -37.22165 -35.54789 -34.78652 -32.74440 -32.32284 -31.28612 -30.59667 -29.36848 -27.49793 -25.61692 -23.85926 -22.57152 -22.37079 -21.88188 -21.81680 -20.58642 -20.06160 -19.83503 -18.14230 -17.15026 -16.77521 -16.62664 -16.37552 -15.69076 -15.31008 -15.07195 -14.69496 -14.42228 -14.36878 -14.09757 -14.01615 -13.54973 -13.36876 -13.13714 -13.02099 -12.77704 -12.62080 -12.50270 -12.41248 -12.00880 -11.79050 -11.57395 -11.51946 -11.34676 -11.26054 -11.16554 -11.12147 -10.79437 -10.52497 -10.38812 -10.30379 -10.02559 -9.90641 -9.41192 -9.27837 -9.10929 -8.72319 -8.65059 -8.61860 -8.37124 -6.11804 -4.12285 1.60461 1.65991 1.72421 2.62385 3.25896 3.34421 3.36698 3.52718 3.71010 3.90993 4.11555 4.37657 4.40475 4.70480 4.81230 4.84787 4.94546 4.99965 5.12145 5.12816 5.14417 5.21804 5.23210 5.36025 5.38846 5.51902 5.58097 5.64094 5.75216 5.75962 5.77296 5.82690 5.89556 5.93462 6.05016 6.10376 6.15596 6.24362 6.25252 6.34756 6.36027 6.59841 6.69847 6.72016 6.86809 6.98452 7.10910 7.25017 7.27861 7.61958 7.74801 8.04750 8.39432 8.41587 8.92528 9.48461 11.00935 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008565 B = 0.003919 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.418830 B = 7142.934278 C = 9187.481797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.126 4.126 3 C 0.172 3.828 4 H 0.096 0.904 5 N -0.698 5.698 6 C 0.510 3.490 7 O -0.512 6.512 8 C 0.504 3.496 9 O -0.532 6.532 10 N -0.665 5.665 11 C 0.193 3.807 12 H 0.097 0.903 13 C -0.014 4.014 14 C -0.524 4.524 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.080 4.080 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.105 4.105 28 C -0.171 4.171 29 C -0.177 4.177 30 C -0.184 4.184 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.411 0.589 37 H 0.414 0.586 38 H 0.037 0.963 39 H 0.021 0.979 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.214 -12.536 0.715 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.068 3.932 4 H 0.114 0.886 5 N -0.352 5.352 6 C 0.292 3.708 7 O -0.388 6.388 8 C 0.284 3.716 9 O -0.409 6.409 10 N -0.316 5.316 11 C 0.089 3.911 12 H 0.115 0.885 13 C -0.052 4.052 14 C -0.562 4.562 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.190 4.190 29 C -0.215 4.215 30 C -0.221 4.221 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.250 0.750 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.128 0.872 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.025 -12.414 0.610 19.499 hybrid contribution 0.216 0.976 0.081 1.003 sum 15.241 -11.437 0.691 19.068 Atomic orbital electron populations 1.21810 0.94973 1.01868 1.02750 1.21772 0.96677 0.94774 1.03155 1.20634 0.92076 0.93429 0.87072 0.88588 1.45826 1.68607 1.06431 1.14297 1.20373 0.77957 0.83246 0.89266 1.90699 1.48019 1.64114 1.35928 1.19947 0.79452 0.83920 0.88264 1.90716 1.50066 1.64162 1.35967 1.45755 1.65524 1.05524 1.14762 1.20129 0.91564 0.96876 0.82514 0.88521 1.19897 0.96561 0.90659 0.98041 1.20980 1.03492 0.95378 1.36311 0.90654 1.24967 0.94624 0.98982 0.94376 1.69896 1.13086 1.31584 1.38825 0.86856 0.78423 0.84994 0.79526 1.20159 1.21280 1.18906 1.20497 0.95691 0.97438 0.94471 1.20975 0.92591 0.99274 0.99892 1.21062 0.98213 1.00834 0.94045 1.21038 0.97799 1.01152 0.94959 1.21065 0.93170 1.00317 0.99478 1.21033 0.98574 0.99503 0.93286 1.22764 0.93772 0.99394 1.03055 1.22948 1.01147 1.04371 0.93004 1.23350 1.02697 0.95400 1.00605 0.92423 0.92369 0.92191 0.91140 0.90252 0.75223 0.74978 0.94443 0.96070 0.92580 0.86363 0.86557 0.86685 0.86417 0.85904 0.87218 0.88766 0.89235 0.89345 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.80 37.16 0.36 -1.01 16 2 C -0.13 -0.99 5.46 -26.73 -0.15 -1.14 16 3 C 0.17 1.79 2.43 -67.93 -0.17 1.62 16 4 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 5 N -0.70 -8.53 3.06 -54.24 -0.17 -8.70 16 6 C 0.51 7.97 6.73 -11.58 -0.08 7.89 16 7 O -0.51 -8.84 13.51 5.50 0.07 -8.76 16 8 C 0.50 8.94 7.85 -11.59 -0.09 8.85 16 9 O -0.53 -10.15 16.14 5.50 0.09 -10.06 16 10 N -0.67 -12.26 4.01 -55.36 -0.22 -12.48 16 11 C 0.19 3.74 2.12 -69.08 -0.15 3.60 16 12 H 0.10 2.02 7.44 -51.93 -0.39 1.64 16 13 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 14 C -0.52 -14.05 9.39 -34.44 -0.32 -14.37 16 15 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 18 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 22 C -0.08 -1.38 4.91 -104.62 -0.51 -1.89 16 23 C -0.11 -1.72 9.33 -39.58 -0.37 -2.09 16 24 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 25 C -0.13 -1.71 10.05 -39.59 -0.40 -2.10 16 26 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 27 C -0.11 -1.67 9.67 -39.58 -0.38 -2.05 16 28 C -0.17 -1.68 5.71 -90.62 -0.52 -2.20 16 29 C -0.18 -1.88 9.74 -26.70 -0.26 -2.14 16 30 C -0.18 -2.12 9.83 -26.69 -0.26 -2.38 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.41 4.69 8.07 -40.82 -0.33 4.36 16 37 H 0.41 7.56 8.07 -40.82 -0.33 7.23 16 38 H 0.04 0.85 7.20 -51.93 -0.37 0.47 16 39 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.79 7.71 -52.49 -0.40 1.39 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.84 8.04 -52.49 -0.42 1.42 16 46 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 47 H 0.09 1.13 6.67 -51.93 -0.35 0.79 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.12 1.66 5.01 -51.93 -0.26 1.40 16 LS Contribution 409.57 15.07 6.17 6.17 Total: -1.00 -31.08 409.57 -10.08 -41.17 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -7.85 Total: 14.53 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -4.28 Total: -12.05 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.39 Total: -47.25 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.16 Total: -18.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.08 -10.08 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331008673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.638 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds