Wall clock time and date at job start Wed Apr 1 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 6 6 C 1.34777 * 120.00201 * 204.99887 * 5 3 2 7 7 O 1.21348 * 119.99713 * 0.02562 * 6 5 3 8 8 C 1.49451 * 120.00411 * 179.97438 * 6 5 3 9 9 O 1.21348 * 119.99876 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99816 * 180.02562 * 8 6 5 11 11 C 1.46506 * 119.99743 * 180.02562 * 10 8 6 12 12 H 1.08993 * 109.46966 * 324.99876 * 11 10 8 13 13 C 1.53001 * 109.47139 * 205.00323 * 11 10 8 14 14 C 1.50701 * 109.47389 * 64.99625 * 13 11 10 15 15 H 1.07998 * 119.99751 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00363 * 180.02562 * 14 13 11 17 17 N 1.31505 * 120.00188 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99544 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47484 * 89.99992 * 18 16 14 20 20 H 1.48506 * 109.46960 * 210.00178 * 18 16 14 21 21 H 1.48497 * 109.47595 * 329.99463 * 18 16 14 22 22 C 1.50697 * 109.47173 * 85.00338 * 11 10 8 23 23 C 1.38235 * 120.00207 * 39.72150 * 22 11 10 24 24 C 1.38237 * 120.00030 * 179.78474 * 23 22 11 25 25 C 1.38233 * 119.99944 * 0.45044 * 24 23 22 26 26 C 1.38233 * 120.00056 * 359.80804 * 25 24 23 27 27 C 1.38238 * 120.00175 * 359.97438 * 26 25 24 28 28 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 29 29 C 1.52996 * 117.49856 * 248.74103 * 28 3 2 30 30 C 1.53003 * 117.49375 * 180.08386 * 28 3 2 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 0.97005 * 120.00681 * 25.00338 * 5 3 2 37 37 H 0.96999 * 120.00658 * 0.02562 * 10 8 6 38 38 H 1.08991 * 109.47183 * 185.00028 * 13 11 10 39 39 H 1.09004 * 109.46746 * 304.99867 * 13 11 10 40 40 H 0.97002 * 120.00521 * 180.02562 * 17 16 14 41 41 H 1.08002 * 119.99888 * 0.02562 * 23 22 11 42 42 H 1.07997 * 119.99760 * 180.27643 * 24 23 22 43 43 H 1.07996 * 120.00193 * 179.82973 * 25 24 23 44 44 H 1.07997 * 120.00643 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00177 * 180.02562 * 27 26 25 46 46 H 1.09003 * 115.55093 * 34.41512 * 28 3 2 47 47 H 1.09005 * 117.49696 * 0.02562 * 29 28 3 48 48 H 1.09002 * 117.49922 * 145.01659 * 29 28 3 49 49 H 1.09004 * 117.49178 * 214.97280 * 30 28 3 50 50 H 1.08993 * 117.50410 * 0.02562 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 1.5256 3.4384 1.2995 7 8 1.7320 4.1032 0.3055 8 6 1.1296 4.1066 2.5763 9 8 0.9227 3.4419 3.5702 10 7 1.0023 5.4475 2.6239 11 6 0.6147 6.1026 3.8757 12 1 -0.0860 5.4667 4.4166 13 6 -0.0505 7.4448 3.5642 14 6 -1.3407 7.2060 2.8230 15 1 -1.6550 6.1978 2.5970 16 6 -2.1199 8.2747 2.4333 17 7 -3.2460 8.0664 1.7869 18 14 -1.5757 10.0186 2.8235 19 1 -0.7433 10.5385 1.7092 20 1 -2.7708 10.8835 2.9940 21 1 -0.7808 10.0202 4.0778 22 6 1.8399 6.3336 4.7221 23 6 3.0225 6.7371 4.1308 24 6 4.1452 6.9533 4.9078 25 6 4.0878 6.7570 6.2749 26 6 2.9067 6.3484 6.8656 27 6 1.7828 6.1365 6.0892 28 6 3.5649 1.4444 -0.1257 29 6 4.3734 1.9003 1.0905 30 6 4.2706 2.8018 -0.1423 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.4871 1.5662 2.0463 37 1 1.1673 5.9789 1.8293 38 1 -0.2585 7.9718 4.4953 39 1 0.6170 8.0465 2.9473 40 1 -3.7940 8.8182 1.5124 41 1 3.0682 6.8872 3.0622 42 1 5.0679 7.2728 4.4464 43 1 4.9657 6.9232 6.8816 44 1 2.8619 6.1946 7.9336 45 1 0.8599 5.8176 6.5507 46 1 3.9868 0.6501 -0.7416 47 1 3.8190 2.1986 1.9804 48 1 5.3274 1.4062 1.2747 49 1 5.1572 2.9003 -0.7688 50 1 3.6488 3.6934 -0.0633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331008673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:47 Heat of formation + Delta-G solvation = -45.330537 kcal Electronic energy + Delta-G solvation = -30776.412719 eV Core-core repulsion = 26768.337649 eV Total energy + Delta-G solvation = -4008.075070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01187 -40.70467 -39.62115 -38.36480 -37.04186 -35.71315 -34.73853 -33.33020 -32.72328 -31.72354 -31.01552 -28.45699 -27.16341 -25.23933 -23.64069 -23.41678 -23.28250 -22.65956 -21.87844 -21.26820 -21.03342 -19.47452 -19.07094 -18.08351 -17.75251 -17.55220 -16.93717 -16.60606 -16.45182 -16.09286 -15.85351 -15.43789 -15.28361 -15.03732 -14.76610 -14.64626 -14.52561 -14.23753 -14.13510 -13.96406 -13.79201 -13.63425 -13.34282 -13.07157 -12.85067 -12.58789 -12.51267 -12.36218 -12.29922 -12.24809 -11.99504 -11.86348 -11.81992 -11.77084 -11.48933 -11.25369 -10.86508 -10.80215 -10.65969 -10.23811 -10.17891 -9.78194 -9.58623 -8.29740 -6.34999 0.35124 0.45630 0.53644 1.35149 1.37303 1.38529 1.48734 2.15582 2.34426 2.62877 2.89276 2.95443 3.06611 3.44724 3.61547 3.85433 3.89719 3.98650 4.02959 4.18551 4.20177 4.22171 4.27820 4.32695 4.35625 4.51332 4.55023 4.69339 4.72254 4.73549 4.79843 4.85481 4.94425 4.98956 5.07319 5.10354 5.11135 5.14076 5.18161 5.23296 5.31846 5.37929 5.39104 5.40113 5.53200 5.62575 5.63108 5.74683 5.99338 6.15059 6.22186 6.38759 6.71316 6.75993 6.97387 7.29146 8.86679 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008565 B = 0.003919 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.418830 B = 7142.934278 C = 9187.481797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C 0.166 3.834 4 H 0.078 0.922 5 N -0.680 5.680 6 C 0.513 3.487 7 O -0.533 6.533 8 C 0.500 3.500 9 O -0.549 6.549 10 N -0.668 5.668 11 C 0.203 3.797 12 H 0.070 0.930 13 C -0.006 4.006 14 C -0.523 4.523 15 H 0.031 0.969 16 C 0.012 3.988 17 N -0.947 5.947 18 Si 0.945 3.055 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.246 1.246 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.156 4.156 29 C -0.174 4.174 30 C -0.202 4.202 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.416 0.584 37 H 0.412 0.588 38 H 0.040 0.960 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.147 0.853 45 H 0.120 0.880 46 H 0.140 0.860 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.102 0.898 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.547 -12.935 1.681 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C 0.063 3.937 4 H 0.096 0.904 5 N -0.333 5.333 6 C 0.293 3.707 7 O -0.410 6.410 8 C 0.281 3.719 9 O -0.428 6.428 10 N -0.318 5.318 11 C 0.098 3.902 12 H 0.089 0.911 13 C -0.043 4.043 14 C -0.561 4.561 15 H 0.050 0.950 16 C -0.185 4.185 17 N -0.587 5.587 18 Si 0.768 3.232 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.169 1.169 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.175 4.175 29 C -0.211 4.211 30 C -0.238 4.238 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.254 0.746 37 H 0.249 0.751 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.164 0.836 45 H 0.138 0.862 46 H 0.158 0.842 47 H 0.094 0.906 48 H 0.128 0.872 49 H 0.120 0.880 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.376 -12.853 1.587 22.481 hybrid contribution -0.824 0.986 -0.202 1.301 sum 17.553 -11.866 1.385 21.232 Atomic orbital electron populations 1.21825 0.95904 1.02530 1.01327 1.21763 0.95716 0.92848 1.05038 1.20875 0.92941 0.94652 0.85227 0.90391 1.45835 1.66972 1.05126 1.15388 1.19993 0.78362 0.84311 0.88018 1.90697 1.49394 1.64771 1.36114 1.20374 0.78875 0.83632 0.89029 1.90688 1.50880 1.64370 1.36831 1.45749 1.65566 1.06018 1.14479 1.19784 0.92563 0.94776 0.83028 0.91142 1.19755 0.94586 0.92619 0.97378 1.21188 1.05317 0.93445 1.36147 0.95029 1.25894 0.94540 1.03852 0.94233 1.70056 1.14793 1.33054 1.40783 0.85743 0.78222 0.78956 0.80270 1.19092 1.21191 1.16898 1.20278 0.95152 1.00044 0.94813 1.21072 0.92944 0.99897 1.00186 1.21407 0.98334 0.99844 0.94531 1.21493 0.98630 0.99095 0.94939 1.21410 0.92475 0.99147 1.00791 1.21189 0.99727 1.00338 0.93034 1.22852 0.92837 0.99033 1.02738 1.22940 1.01968 1.04081 0.92136 1.23294 1.03325 0.95184 1.02041 0.90718 0.93314 0.94142 0.89728 0.87720 0.74610 0.75127 0.94222 0.95013 0.92495 0.86617 0.83841 0.83088 0.83555 0.86206 0.84229 0.90611 0.87239 0.87958 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.80 71.98 0.71 -1.95 16 2 C -0.12 -1.58 5.46 30.60 0.17 -1.41 16 3 C 0.17 3.33 2.43 45.00 0.11 3.44 16 4 H 0.08 1.90 7.58 -2.39 -0.02 1.88 16 5 N -0.68 -16.98 3.06 -443.87 -1.36 -18.33 16 6 C 0.51 16.84 6.73 87.27 0.59 17.43 16 7 O -0.53 -19.41 13.51 -3.24 -0.04 -19.45 16 8 C 0.50 18.82 7.85 87.27 0.68 19.51 16 9 O -0.55 -22.06 16.14 -3.24 -0.05 -22.12 16 10 N -0.67 -26.19 4.01 -447.43 -1.80 -27.99 16 11 C 0.20 8.26 2.12 44.24 0.09 8.35 16 12 H 0.07 3.18 7.44 -2.39 -0.02 3.16 16 13 C -0.01 -0.26 3.56 29.85 0.11 -0.16 16 14 C -0.52 -29.41 9.39 25.60 0.24 -29.17 16 15 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 16 C 0.01 0.71 5.47 84.66 0.46 1.17 16 17 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 18 Si 0.94 43.52 27.47 68.60 1.88 45.40 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.25 -10.48 6.54 99.48 0.65 -9.82 16 22 C -0.10 -3.54 4.91 -19.87 -0.10 -3.63 16 23 C -0.12 -3.78 9.33 22.27 0.21 -3.58 16 24 C -0.12 -3.05 10.05 22.27 0.22 -2.83 16 25 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 26 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 27 C -0.12 -3.89 9.67 22.27 0.22 -3.67 16 28 C -0.16 -2.77 5.71 -10.79 -0.06 -2.83 16 29 C -0.17 -3.43 9.74 30.62 0.30 -3.13 16 30 C -0.20 -4.52 9.83 30.62 0.30 -4.22 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.82 7.75 -2.38 -0.02 0.80 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.42 9.61 8.07 -92.70 -0.75 8.86 16 37 H 0.41 16.11 8.07 -92.71 -0.75 15.36 16 38 H 0.04 1.79 7.20 -2.39 -0.02 1.78 16 39 H 0.03 1.38 7.57 -2.39 -0.02 1.37 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.12 3.52 7.71 -2.91 -0.02 3.50 16 42 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.12 3.67 8.04 -2.91 -0.02 3.65 16 46 H 0.14 1.71 8.11 -2.39 -0.02 1.69 16 47 H 0.08 1.79 6.67 -2.38 -0.02 1.77 16 48 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.09 2.54 5.01 -2.39 -0.01 2.53 16 Total: -1.00 -71.31 409.57 3.03 -68.28 By element: Atomic # 1 Polarization: 45.47 SS G_CDS: -0.60 Total: 44.88 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.69 Total: -11.95 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -2.85 Total: -105.05 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.10 Total: -41.57 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Total: -71.31 3.03 -68.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331008673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.954 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds