Wall clock time and date at job start Wed Apr 1 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00049 * 3 2 1 5 5 N 1.46497 * 109.47007 * 295.00479 * 3 2 1 6 6 C 1.34773 * 120.00139 * 85.00157 * 5 3 2 7 7 O 1.21346 * 120.00392 * 359.97438 * 6 5 3 8 8 C 1.49457 * 119.99873 * 179.97438 * 6 5 3 9 9 O 1.21348 * 119.99854 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99873 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99802 * 179.97438 * 10 8 6 12 12 H 1.08999 * 109.47468 * 324.99788 * 11 10 8 13 13 C 1.53003 * 109.46950 * 204.99767 * 11 10 8 14 14 C 1.50696 * 109.47301 * 65.00062 * 13 11 10 15 15 H 1.08005 * 120.00001 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00135 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99796 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47553 * 59.99870 * 18 16 14 20 20 H 1.48498 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47512 * 299.99708 * 18 16 14 22 22 C 1.50702 * 109.46980 * 85.00075 * 11 10 8 23 23 C 1.38234 * 120.00194 * 39.72522 * 22 11 10 24 24 C 1.38235 * 119.99945 * 179.79128 * 23 22 11 25 25 C 1.38235 * 119.99928 * 0.44034 * 24 23 22 26 26 C 1.38241 * 119.99917 * 359.80804 * 25 24 23 27 27 C 1.38232 * 120.00067 * 359.97438 * 26 25 24 28 28 C 1.52996 * 109.47102 * 175.00294 * 3 2 1 29 29 C 1.52999 * 117.49668 * 248.74935 * 28 3 2 30 30 C 1.53001 * 117.49904 * 180.09004 * 28 3 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 34 34 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 35 35 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 36 36 H 0.97001 * 119.99940 * 264.99615 * 5 3 2 37 37 H 0.97003 * 120.00490 * 359.97438 * 10 8 6 38 38 H 1.08997 * 109.47060 * 185.00088 * 13 11 10 39 39 H 1.09003 * 109.47119 * 304.99938 * 13 11 10 40 40 H 0.96998 * 119.99911 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00108 * 359.97438 * 23 22 11 42 42 H 1.07995 * 120.00121 * 180.27180 * 24 23 22 43 43 H 1.07998 * 120.00012 * 179.83847 * 25 24 23 44 44 H 1.08002 * 119.99997 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00031 * 179.97438 * 27 26 25 46 46 H 1.08999 * 115.55229 * 34.41257 * 28 3 2 47 47 H 1.09004 * 117.50164 * 0.02562 * 29 28 3 48 48 H 1.09005 * 117.50063 * 145.01790 * 29 28 3 49 49 H 1.08998 * 117.49830 * 214.97533 * 30 28 3 50 50 H 1.08999 * 117.49605 * 359.97438 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 0.4351 2.6645 -1.3668 7 8 -0.3401 2.6320 -0.4337 8 6 0.0398 3.3332 -2.6437 9 8 0.8151 3.3660 -3.5766 10 7 -1.1776 3.8996 -2.7589 11 6 -1.5648 4.5556 -4.0104 12 1 -0.6929 5.0372 -4.4531 13 6 -2.6381 5.6078 -3.7238 14 6 -2.0543 6.7000 -2.8652 15 1 -1.0211 6.6486 -2.5546 16 6 -2.8393 7.7643 -2.4754 17 7 -4.0977 7.8261 -2.8523 18 14 -2.1153 9.1185 -1.4117 19 1 -0.9782 9.7537 -2.1249 20 1 -3.1570 10.1396 -1.1335 21 1 -1.6350 8.5391 -0.1315 22 6 -2.1115 3.5282 -4.9678 23 6 -2.9257 2.5130 -4.5015 24 6 -3.4307 1.5731 -5.3804 25 6 -3.1141 1.6432 -6.7242 26 6 -2.2957 2.6554 -7.1897 27 6 -1.7944 3.5979 -6.3115 28 6 3.5648 1.4444 0.1256 29 6 4.1655 1.9736 1.4294 30 6 4.2703 2.8019 0.1464 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2718 2.1233 -1.9978 37 1 -1.7975 3.8730 -2.0133 38 1 -2.9898 6.0333 -4.6636 39 1 -3.4732 5.1418 -3.2008 40 1 -4.6498 8.5750 -2.5784 41 1 -3.1697 2.4559 -3.4510 42 1 -4.0703 0.7826 -5.0168 43 1 -3.5065 0.9074 -7.4105 44 1 -2.0480 2.7099 -8.2395 45 1 -1.1547 4.3884 -6.6751 46 1 4.0780 0.6179 -0.3658 47 1 3.4744 2.3201 2.1979 48 1 5.0742 1.4956 1.7955 49 1 5.2478 2.8683 -0.3312 50 1 3.6481 3.6936 0.0701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331008674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:52 Heat of formation + Delta-G solvation = -35.294798 kcal Electronic energy + Delta-G solvation = -30464.213867 eV Core-core repulsion = 26456.573979 eV Total energy + Delta-G solvation = -4007.639888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60303 -39.33953 -38.38057 -37.52846 -35.46751 -34.68343 -32.77068 -32.29741 -31.14749 -30.48530 -28.86819 -27.43322 -25.39000 -23.84785 -22.62792 -22.32155 -21.98198 -21.84267 -20.75593 -20.25403 -19.74132 -18.12546 -16.99544 -16.67338 -16.27256 -16.15603 -15.52791 -15.42870 -15.03902 -14.85334 -14.56331 -14.53706 -14.12910 -13.96210 -13.43647 -13.16804 -13.02872 -12.93790 -12.65782 -12.54353 -12.34637 -12.12129 -11.86006 -11.71357 -11.62288 -11.29599 -11.27188 -11.13606 -10.96449 -10.92316 -10.73252 -10.68010 -10.64613 -10.46884 -10.43795 -9.81756 -9.37865 -9.21989 -9.10665 -8.63569 -8.53644 -8.45175 -8.23055 -6.08948 -4.12799 1.71842 1.77058 1.78441 2.60735 3.30449 3.34884 3.37952 3.51842 3.57904 4.02166 4.21177 4.22673 4.40579 4.58487 4.72464 4.84508 4.88088 5.01887 5.09980 5.23297 5.24807 5.28077 5.29770 5.34100 5.39306 5.50313 5.58043 5.63571 5.69878 5.85941 5.87154 5.89141 5.89859 5.92518 6.05280 6.08297 6.30292 6.31649 6.38614 6.39318 6.50921 6.70945 6.81473 6.82529 7.03722 7.22336 7.36758 7.46521 7.55025 7.82213 7.86605 8.09848 8.23341 8.45843 8.91897 9.52472 11.01538 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.003979 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.025032 B = 7034.803031 C = 9716.321417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.173 3.827 4 H 0.092 0.908 5 N -0.698 5.698 6 C 0.508 3.492 7 O -0.514 6.514 8 C 0.502 3.498 9 O -0.534 6.534 10 N -0.665 5.665 11 C 0.182 3.818 12 H 0.091 0.909 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.074 4.074 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.107 4.107 28 C -0.170 4.170 29 C -0.168 4.168 30 C -0.172 4.172 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 -15.952 2.068 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.069 3.931 4 H 0.110 0.890 5 N -0.352 5.352 6 C 0.290 3.710 7 O -0.389 6.389 8 C 0.281 3.719 9 O -0.411 6.411 10 N -0.315 5.315 11 C 0.079 3.921 12 H 0.109 0.891 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.075 4.075 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.125 4.125 28 C -0.188 4.188 29 C -0.205 4.205 30 C -0.210 4.210 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.250 0.750 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.129 0.871 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.025 -15.812 2.100 19.390 hybrid contribution 0.296 0.801 0.554 1.018 sum 11.321 -15.011 2.654 18.988 Atomic orbital electron populations 1.21830 0.94681 1.00771 1.03242 1.21924 0.97132 0.95458 1.02285 1.20667 0.91573 0.93655 0.87176 0.89037 1.45798 1.16169 1.56209 1.17026 1.20370 0.82599 0.79302 0.88766 1.90762 1.50803 1.57460 1.39858 1.19993 0.83536 0.80620 0.87730 1.90711 1.51294 1.59070 1.40059 1.45852 1.14904 1.53165 1.17598 1.20420 1.00106 0.90528 0.81062 0.89080 1.19408 0.92181 0.91515 0.98222 1.21069 0.97353 1.05829 1.31921 0.92492 1.24963 0.94781 0.98102 0.96099 1.69942 1.06246 1.31404 1.45349 0.86652 0.78771 0.81619 0.80982 1.20201 1.21246 1.20171 1.20478 0.96399 0.95885 0.94782 1.20954 0.97260 0.94687 0.99694 1.21051 1.00329 0.99162 0.93656 1.21015 0.99583 0.98927 0.95602 1.21045 0.98410 0.95413 0.99225 1.21007 0.99772 0.98816 0.92909 1.22548 0.94090 0.98905 1.03298 1.22995 1.02810 1.03676 0.91068 1.22963 1.02105 0.94678 1.01210 0.93438 0.91962 0.92466 0.91746 0.90915 0.75280 0.75001 0.94402 0.95493 0.92755 0.86438 0.86642 0.86773 0.86525 0.86067 0.87107 0.88471 0.88476 0.88465 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.51 37.16 0.32 -1.40 16 2 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 3 C 0.17 1.79 2.45 -67.93 -0.17 1.62 16 4 H 0.09 1.09 7.34 -51.93 -0.38 0.71 16 5 N -0.70 -8.60 4.90 -54.23 -0.27 -8.87 16 6 C 0.51 7.96 6.46 -11.58 -0.07 7.89 16 7 O -0.51 -8.82 13.61 5.50 0.07 -8.75 16 8 C 0.50 8.98 7.85 -11.58 -0.09 8.89 16 9 O -0.53 -10.32 16.14 5.50 0.09 -10.23 16 10 N -0.67 -12.52 4.01 -55.36 -0.22 -12.74 16 11 C 0.18 3.69 2.12 -69.08 -0.15 3.54 16 12 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 13 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 14 C -0.52 -13.94 8.84 -34.44 -0.30 -14.25 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.07 -1.36 4.91 -104.62 -0.51 -1.88 16 23 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 24 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 28 C -0.17 -1.38 5.22 -90.62 -0.47 -1.86 16 29 C -0.17 -1.26 10.18 -26.69 -0.27 -1.53 16 30 C -0.17 -1.46 10.13 -26.69 -0.27 -1.73 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 33 H 0.06 0.78 5.64 -51.93 -0.29 0.49 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.41 4.76 8.07 -40.82 -0.33 4.43 16 37 H 0.41 7.77 8.07 -40.82 -0.33 7.44 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.12 1.93 7.71 -52.49 -0.40 1.53 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 46 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 47 H 0.10 0.75 8.05 -51.93 -0.42 0.34 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 415.84 15.07 6.27 6.27 Total: -1.00 -30.30 415.84 -10.64 -40.94 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.98 Total: 13.10 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -4.31 Total: -11.06 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.25 Total: -46.54 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.16 Total: -18.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.30 -10.64 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331008674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.645 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds