Wall clock time and date at job start Wed Apr 1 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00049 * 3 2 1 5 5 N 1.46497 * 109.47007 * 295.00479 * 3 2 1 6 6 C 1.34773 * 120.00139 * 85.00157 * 5 3 2 7 7 O 1.21346 * 120.00392 * 359.97438 * 6 5 3 8 8 C 1.49457 * 119.99873 * 179.97438 * 6 5 3 9 9 O 1.21348 * 119.99854 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99873 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99802 * 179.97438 * 10 8 6 12 12 H 1.08999 * 109.47468 * 324.99788 * 11 10 8 13 13 C 1.53003 * 109.46950 * 204.99767 * 11 10 8 14 14 C 1.50696 * 109.47301 * 65.00062 * 13 11 10 15 15 H 1.08005 * 120.00001 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00135 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99796 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47553 * 59.99870 * 18 16 14 20 20 H 1.48498 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47512 * 299.99708 * 18 16 14 22 22 C 1.50702 * 109.46980 * 85.00075 * 11 10 8 23 23 C 1.38234 * 120.00194 * 39.72522 * 22 11 10 24 24 C 1.38235 * 119.99945 * 179.79128 * 23 22 11 25 25 C 1.38235 * 119.99928 * 0.44034 * 24 23 22 26 26 C 1.38241 * 119.99917 * 359.80804 * 25 24 23 27 27 C 1.38232 * 120.00067 * 359.97438 * 26 25 24 28 28 C 1.52996 * 109.47102 * 175.00294 * 3 2 1 29 29 C 1.52999 * 117.49668 * 248.74935 * 28 3 2 30 30 C 1.53001 * 117.49904 * 180.09004 * 28 3 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 34 34 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 35 35 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 36 36 H 0.97001 * 119.99940 * 264.99615 * 5 3 2 37 37 H 0.97003 * 120.00490 * 359.97438 * 10 8 6 38 38 H 1.08997 * 109.47060 * 185.00088 * 13 11 10 39 39 H 1.09003 * 109.47119 * 304.99938 * 13 11 10 40 40 H 0.96998 * 119.99911 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00108 * 359.97438 * 23 22 11 42 42 H 1.07995 * 120.00121 * 180.27180 * 24 23 22 43 43 H 1.07998 * 120.00012 * 179.83847 * 25 24 23 44 44 H 1.08002 * 119.99997 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00031 * 179.97438 * 27 26 25 46 46 H 1.08999 * 115.55229 * 34.41257 * 28 3 2 47 47 H 1.09004 * 117.50164 * 0.02562 * 29 28 3 48 48 H 1.09005 * 117.50063 * 145.01790 * 29 28 3 49 49 H 1.08998 * 117.49830 * 214.97533 * 30 28 3 50 50 H 1.08999 * 117.49605 * 359.97438 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 0.4351 2.6645 -1.3668 7 8 -0.3401 2.6320 -0.4337 8 6 0.0398 3.3332 -2.6437 9 8 0.8151 3.3660 -3.5766 10 7 -1.1776 3.8996 -2.7589 11 6 -1.5648 4.5556 -4.0104 12 1 -0.6929 5.0372 -4.4531 13 6 -2.6381 5.6078 -3.7238 14 6 -2.0543 6.7000 -2.8652 15 1 -1.0211 6.6486 -2.5546 16 6 -2.8393 7.7643 -2.4754 17 7 -4.0977 7.8261 -2.8523 18 14 -2.1153 9.1185 -1.4117 19 1 -0.9782 9.7537 -2.1249 20 1 -3.1570 10.1396 -1.1335 21 1 -1.6350 8.5391 -0.1315 22 6 -2.1115 3.5282 -4.9678 23 6 -2.9257 2.5130 -4.5015 24 6 -3.4307 1.5731 -5.3804 25 6 -3.1141 1.6432 -6.7242 26 6 -2.2957 2.6554 -7.1897 27 6 -1.7944 3.5979 -6.3115 28 6 3.5648 1.4444 0.1256 29 6 4.1655 1.9736 1.4294 30 6 4.2703 2.8019 0.1464 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2718 2.1233 -1.9978 37 1 -1.7975 3.8730 -2.0133 38 1 -2.9898 6.0333 -4.6636 39 1 -3.4732 5.1418 -3.2008 40 1 -4.6498 8.5750 -2.5784 41 1 -3.1697 2.4559 -3.4510 42 1 -4.0703 0.7826 -5.0168 43 1 -3.5065 0.9074 -7.4105 44 1 -2.0480 2.7099 -8.2395 45 1 -1.1547 4.3884 -6.6751 46 1 4.0780 0.6179 -0.3658 47 1 3.4744 2.3201 2.1979 48 1 5.0742 1.4956 1.7955 49 1 5.2478 2.8683 -0.3312 50 1 3.6481 3.6936 0.0701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331008674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:51 Heat of formation + Delta-G solvation = -52.154161 kcal Electronic energy + Delta-G solvation = -30464.944944 eV Core-core repulsion = 26456.573979 eV Total energy + Delta-G solvation = -4008.370965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90132 -40.60009 -39.56996 -38.57547 -37.00606 -35.67518 -34.75004 -33.31677 -32.60002 -31.71282 -30.59525 -28.43700 -27.05199 -25.26475 -23.83195 -23.40975 -23.23419 -22.65758 -21.66797 -21.56008 -21.15951 -19.43129 -18.63640 -18.08894 -17.63430 -17.40131 -16.79857 -16.72882 -16.45307 -16.13526 -15.95086 -15.44383 -15.35606 -15.13693 -14.89372 -14.52452 -14.21208 -14.20230 -14.01278 -13.76944 -13.71211 -13.50098 -13.22993 -12.97279 -12.85091 -12.67068 -12.53329 -12.42957 -12.37465 -12.18790 -12.08477 -11.89829 -11.77833 -11.64481 -11.39405 -11.36071 -11.15284 -10.67101 -10.54236 -10.20750 -10.14838 -9.77473 -9.55723 -8.22590 -6.32924 0.39668 0.47969 0.54320 1.37266 1.38304 1.39588 1.47356 2.20037 2.37967 2.57442 2.92797 3.04261 3.12579 3.46886 3.52183 3.87906 3.92896 4.00415 4.06416 4.13121 4.19404 4.21950 4.31190 4.36247 4.37128 4.45101 4.60022 4.71718 4.72754 4.75929 4.79988 4.91154 5.01103 5.02502 5.06477 5.09567 5.13073 5.18787 5.24466 5.27187 5.34971 5.38004 5.44782 5.51189 5.59554 5.62994 5.74214 5.77885 6.03989 6.12834 6.17438 6.43491 6.78730 6.79392 7.00896 7.35881 8.88012 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.003979 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.025032 B = 7034.803031 C = 9716.321417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.170 3.830 4 H 0.074 0.926 5 N -0.681 5.681 6 C 0.513 3.487 7 O -0.533 6.533 8 C 0.500 3.500 9 O -0.549 6.549 10 N -0.668 5.668 11 C 0.198 3.802 12 H 0.073 0.927 13 C 0.037 3.963 14 C -0.534 4.534 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.272 1.272 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.165 4.165 29 C -0.157 4.157 30 C -0.184 4.184 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.416 0.584 37 H 0.412 0.588 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.120 0.880 46 H 0.132 0.868 47 H 0.091 0.909 48 H 0.118 0.882 49 H 0.110 0.890 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.761 -18.071 1.986 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.067 3.933 4 H 0.092 0.908 5 N -0.334 5.334 6 C 0.293 3.707 7 O -0.410 6.410 8 C 0.281 3.719 9 O -0.428 6.428 10 N -0.317 5.317 11 C 0.094 3.906 12 H 0.091 0.909 13 C 0.000 4.000 14 C -0.572 4.572 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.197 1.197 22 C -0.101 4.101 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.183 4.183 29 C -0.195 4.195 30 C -0.221 4.221 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.254 0.746 37 H 0.248 0.752 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.130 0.870 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.138 0.862 46 H 0.150 0.850 47 H 0.110 0.890 48 H 0.137 0.863 49 H 0.129 0.871 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.590 -17.950 2.021 22.018 hybrid contribution -0.183 1.399 0.534 1.509 sum 12.407 -16.551 2.555 20.842 Atomic orbital electron populations 1.21796 0.96407 1.01013 1.01224 1.21906 0.95431 0.94818 1.03971 1.20851 0.93326 0.93838 0.85268 0.90795 1.45813 1.14747 1.54790 1.18011 1.19925 0.83603 0.79682 0.87487 1.90758 1.51632 1.58589 1.40026 1.20410 0.82796 0.80181 0.88538 1.90686 1.51526 1.59699 1.40908 1.45782 1.15477 1.53385 1.17097 1.19950 0.97963 0.90606 0.82086 0.90935 1.19141 0.92679 0.91975 0.96204 1.21365 0.97193 1.06633 1.31990 0.92906 1.25753 0.95110 1.00400 0.97349 1.70053 1.07441 1.32252 1.46619 0.85669 0.78212 0.78888 0.79316 1.19534 1.20594 1.19728 1.20346 0.98250 0.96431 0.95082 1.21046 0.97806 0.95328 1.00093 1.21409 0.99976 0.98947 0.93946 1.21487 0.98181 0.98933 0.95737 1.21420 0.97583 0.94498 1.00364 1.21186 1.00606 0.99923 0.92799 1.22530 0.92239 0.99324 1.04255 1.23080 1.03286 1.02695 0.90420 1.22967 1.02447 0.94024 1.02634 0.92025 0.93464 0.95004 0.90582 0.88547 0.74649 0.75217 0.96918 0.97299 0.92639 0.87022 0.83885 0.82961 0.83430 0.86223 0.84999 0.89038 0.86340 0.87126 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.51 71.98 0.61 -2.71 16 2 C -0.12 -2.10 5.59 30.60 0.17 -1.92 16 3 C 0.17 3.33 2.45 44.99 0.11 3.44 16 4 H 0.07 1.75 7.34 -2.38 -0.02 1.73 16 5 N -0.68 -16.63 4.90 -443.86 -2.18 -18.81 16 6 C 0.51 16.51 6.46 87.27 0.56 17.08 16 7 O -0.53 -18.99 13.61 -3.23 -0.04 -19.04 16 8 C 0.50 18.64 7.85 87.27 0.68 19.33 16 9 O -0.55 -21.88 16.14 -3.24 -0.05 -21.93 16 10 N -0.67 -26.62 4.01 -447.41 -1.80 -28.41 16 11 C 0.20 8.51 2.12 44.25 0.09 8.60 16 12 H 0.07 3.33 7.44 -2.39 -0.02 3.31 16 13 C 0.04 1.91 4.50 29.85 0.13 2.04 16 14 C -0.53 -29.59 8.84 25.60 0.23 -29.36 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.92 -54.77 13.29 21.45 0.28 -54.48 16 18 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.10 -3.81 4.91 -19.86 -0.10 -3.90 16 23 C -0.12 -4.29 9.33 22.27 0.21 -4.09 16 24 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 25 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 26 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 27 C -0.13 -4.33 9.67 22.27 0.22 -4.11 16 28 C -0.17 -2.32 5.22 -10.79 -0.06 -2.37 16 29 C -0.16 -2.01 10.18 30.62 0.31 -1.70 16 30 C -0.18 -2.86 10.13 30.62 0.31 -2.55 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.19 7.85 -2.39 -0.02 1.17 16 33 H 0.03 0.87 5.64 -2.38 -0.01 0.86 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 9.39 8.07 -92.71 -0.75 8.64 16 37 H 0.41 16.56 8.07 -92.71 -0.75 15.81 16 38 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.11 3.86 7.71 -2.91 -0.02 3.83 16 42 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 45 H 0.12 3.97 8.04 -2.91 -0.02 3.95 16 46 H 0.13 1.37 8.11 -2.39 -0.02 1.35 16 47 H 0.09 1.29 8.05 -2.38 -0.02 1.27 16 48 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -67.82 415.84 2.32 -65.50 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.55 Total: 41.06 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.62 Total: -10.32 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -3.69 Total: -101.70 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.10 Total: -40.97 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -67.82 2.32 -65.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331008674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.350 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds