Wall clock time and date at job start Wed Apr 1 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46850 * 2 1 4 4 H 1.09003 * 109.47010 * 55.00785 * 3 2 1 5 5 C 1.53005 * 109.47033 * 175.00361 * 3 2 1 6 6 C 1.50697 * 109.47175 * 185.00401 * 5 3 2 7 7 C 1.38238 * 119.99993 * 269.72266 * 6 5 3 8 8 C 1.38229 * 120.00236 * 180.32089 * 7 6 5 9 9 C 1.38237 * 119.99895 * 359.95469 * 8 7 6 10 10 C 1.38238 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.38228 * 120.00288 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47347 * 295.00312 * 3 2 1 13 13 C 1.34773 * 120.00257 * 85.00031 * 12 3 2 14 14 O 1.21355 * 119.99644 * 359.97438 * 13 12 3 15 15 C 1.49447 * 120.00274 * 179.97438 * 13 12 3 16 16 O 1.21340 * 120.00051 * 355.00505 * 15 13 12 17 17 N 1.34780 * 119.99892 * 174.99994 * 15 13 12 18 18 C 1.46496 * 119.99749 * 185.78129 * 17 15 13 19 19 C 1.53005 * 109.46949 * 183.69436 * 18 17 15 20 20 C 1.50702 * 115.55112 * 306.41621 * 19 18 17 21 21 H 1.07995 * 119.99909 * 145.11153 * 20 19 18 22 22 C 1.37879 * 119.99587 * 325.11033 * 20 19 18 23 23 N 1.31513 * 120.00383 * 349.44141 * 22 20 19 24 24 Si 1.86797 * 119.99710 * 169.44532 * 22 20 19 25 25 H 1.48504 * 109.47085 * 59.99815 * 24 22 20 26 26 H 1.48506 * 109.47125 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47289 * 300.00015 * 24 22 20 28 28 C 1.53005 * 117.49940 * 160.74738 * 19 18 17 29 29 C 1.52999 * 117.49954 * 92.08838 * 19 18 17 30 30 H 1.09005 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46589 * 299.99200 * 1 2 3 32 32 H 1.09000 * 109.47076 * 60.00029 * 1 2 3 33 33 H 1.09004 * 109.46983 * 240.00748 * 2 1 3 34 34 H 1.08998 * 109.47433 * 120.00647 * 2 1 3 35 35 H 1.08993 * 109.47123 * 64.99783 * 5 3 2 36 36 H 1.09006 * 109.46635 * 305.00163 * 5 3 2 37 37 H 1.08006 * 119.99775 * 0.27777 * 7 6 5 38 38 H 1.08001 * 120.00217 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.00049 * 179.97438 * 9 8 7 40 40 H 1.08007 * 119.99272 * 179.97438 * 10 9 8 41 41 H 1.08000 * 120.00158 * 179.97438 * 11 10 9 42 42 H 0.97005 * 120.00222 * 264.99892 * 12 3 2 43 43 H 0.96998 * 119.99948 * 5.77653 * 17 15 13 44 44 H 1.08999 * 109.47352 * 303.68932 * 18 17 15 45 45 H 1.09000 * 109.47572 * 63.69615 * 18 17 15 46 46 H 0.96999 * 120.00436 * 185.02965 * 23 22 20 47 47 H 1.09004 * 117.49761 * 359.97438 * 28 19 18 48 48 H 1.08994 * 117.50040 * 145.01928 * 28 19 18 49 49 H 1.08997 * 117.50029 * 214.98166 * 29 19 18 50 50 H 1.09004 * 117.49870 * 359.96844 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1256 6 6 4.0569 2.8634 0.2493 7 6 4.3862 3.5821 -0.8848 8 6 4.8439 4.8814 -0.7711 9 6 4.9715 5.4625 0.4767 10 6 4.6419 4.7440 1.6108 11 6 4.1842 3.4446 1.4970 12 7 1.6523 2.0976 -1.2517 13 6 0.4350 2.6644 -1.3668 14 8 -0.3401 2.6319 -0.4337 15 6 0.0398 3.3332 -2.6436 16 8 0.8453 3.4458 -3.5441 17 7 -1.2113 3.8110 -2.7948 18 6 -1.6375 4.3519 -4.0878 19 6 -3.0579 4.9071 -3.9652 20 6 -4.0833 3.9525 -3.4098 21 1 -4.8812 4.3219 -2.7828 22 6 -4.0027 2.6076 -3.7024 23 7 -3.1659 2.1841 -4.6244 24 14 -5.0822 1.3868 -2.7893 25 1 -6.5109 1.7195 -3.0209 26 1 -4.8071 0.0146 -3.2859 27 1 -4.7874 1.4561 -1.3355 28 6 -3.5225 5.9009 -5.0318 29 6 -3.2095 6.3888 -3.6151 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0029 0.9837 -0.7597 36 1 3.8571 0.8800 1.0112 37 1 4.2864 3.1281 -1.8597 38 1 5.1015 5.4427 -1.6571 39 1 5.3295 6.4776 0.5656 40 1 4.7420 5.1979 2.5857 41 1 3.9271 2.8831 2.3830 42 1 2.2718 2.1233 -1.9978 43 1 -1.8295 3.7968 -2.0475 44 1 -0.9598 5.1509 -4.3887 45 1 -1.6204 3.5598 -4.8365 46 1 -3.1606 1.2489 -4.8819 47 1 -2.8161 6.1594 -5.8207 48 1 -4.5698 5.8644 -5.3316 49 1 -4.0509 6.6732 -2.9834 50 1 -2.2972 6.9679 -3.4717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341221676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:15 Heat of formation + Delta-G solvation = -32.939788 kcal Electronic energy + Delta-G solvation = -30763.568853 eV Core-core repulsion = 26756.031086 eV Total energy + Delta-G solvation = -4007.537767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38699 -39.35708 -38.17248 -36.67762 -36.27482 -33.28837 -32.44937 -32.22682 -32.08770 -30.98574 -28.44859 -26.74593 -25.54944 -24.38815 -23.19575 -22.69253 -21.30082 -21.22855 -20.65554 -19.71190 -19.35403 -17.87746 -16.90616 -16.68756 -16.18713 -15.75629 -15.48507 -15.25557 -14.93754 -14.79937 -14.51263 -14.10520 -13.86488 -13.77210 -13.53198 -13.43084 -13.09158 -12.93966 -12.74871 -12.58471 -12.43367 -11.95828 -11.78184 -11.57966 -11.51933 -11.33232 -11.13375 -11.02835 -10.95438 -10.92696 -10.83614 -10.73560 -10.52454 -10.29271 -9.63546 -9.19381 -9.07792 -8.97812 -8.92709 -8.85867 -8.74800 -8.31363 -7.99453 -6.10349 -4.19628 1.22436 1.29664 2.05443 2.91383 3.25507 3.31526 3.35551 3.64897 3.87680 4.25462 4.31360 4.47745 4.66852 4.74418 4.88690 4.91150 4.98303 5.05231 5.12207 5.19913 5.26092 5.38001 5.45319 5.48736 5.52122 5.53086 5.74190 5.88923 5.92612 5.93795 5.97042 6.04595 6.20454 6.26303 6.34426 6.39980 6.44209 6.49805 6.52787 6.56857 6.59251 6.65943 6.84388 6.88876 7.01187 7.22667 7.29848 7.48044 7.49394 7.86560 8.10765 8.28151 8.42405 8.78258 8.83954 9.41877 10.86948 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003394 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.967918 B = 8247.743646 C = 9745.823441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.149 3.851 4 H 0.092 0.908 5 C -0.089 4.089 6 C -0.082 4.082 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.125 4.125 10 C -0.120 4.120 11 C -0.117 4.117 12 N -0.700 5.700 13 C 0.510 3.490 14 O -0.516 6.516 15 C 0.493 3.507 16 O -0.549 6.549 17 N -0.650 5.650 18 C 0.159 3.841 19 C 0.036 3.964 20 C -0.500 4.500 21 H 0.063 0.937 22 C 0.077 3.923 23 N -0.871 5.871 24 Si 0.890 3.110 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.271 1.271 28 C -0.193 4.193 29 C -0.211 4.211 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.408 0.592 43 H 0.412 0.588 44 H 0.033 0.967 45 H 0.114 0.886 46 H 0.264 0.736 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.232 -1.164 10.072 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.045 3.955 4 H 0.110 0.890 5 C -0.127 4.127 6 C -0.082 4.082 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.143 4.143 10 C -0.138 4.138 11 C -0.135 4.135 12 N -0.354 5.354 13 C 0.292 3.708 14 O -0.391 6.391 15 C 0.273 3.727 16 O -0.430 6.430 17 N -0.299 5.299 18 C 0.036 3.964 19 C 0.036 3.964 20 C -0.537 4.537 21 H 0.081 0.919 22 C -0.127 4.127 23 N -0.507 5.507 24 Si 0.717 3.283 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.196 1.196 28 C -0.232 4.232 29 C -0.249 4.249 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.244 0.756 43 H 0.249 0.751 44 H 0.051 0.949 45 H 0.132 0.868 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.297 -1.309 10.050 19.192 hybrid contribution -0.703 -0.552 0.317 0.948 sum 15.594 -1.861 10.367 18.818 Atomic orbital electron populations 1.21828 0.94461 1.00832 1.03490 1.21982 0.97492 0.95507 1.02186 1.21094 0.93162 0.93563 0.87710 0.88968 1.20944 0.94368 0.93453 1.03921 1.19796 0.99031 0.95996 0.93391 1.21078 0.98840 0.94751 0.98075 1.21172 0.99302 0.95290 0.97598 1.21152 1.00592 0.99801 0.92767 1.21117 0.99537 0.94650 0.98532 1.21020 1.00049 0.95528 0.96906 1.45761 1.16335 1.56681 1.16670 1.20496 0.82236 0.79166 0.88951 1.90745 1.50625 1.57622 1.40108 1.19840 0.84110 0.81385 0.87408 1.90664 1.51012 1.58741 1.42555 1.45697 1.11378 1.56808 1.15985 1.21197 0.92455 0.98194 0.84525 1.19156 0.93198 0.86655 0.97424 1.20469 1.11052 0.90805 1.31353 0.91899 1.24950 0.95035 0.98219 0.94532 1.69813 1.36093 1.16320 1.28455 0.86667 0.80698 0.80120 0.80777 1.20199 1.21199 1.19646 1.22925 1.00603 1.08657 0.91021 1.22974 1.01182 1.01364 0.99337 0.93503 0.92042 0.92134 0.91672 0.91113 0.90129 0.89212 0.86057 0.86034 0.86297 0.86255 0.86176 0.75627 0.75092 0.94871 0.86816 0.92555 0.91453 0.90091 0.90485 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.51 37.16 0.32 -1.79 16 2 C -0.13 -1.44 5.61 -26.73 -0.15 -1.59 16 3 C 0.15 1.69 2.24 -67.93 -0.15 1.54 16 4 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 5 C -0.09 -0.76 4.89 -27.88 -0.14 -0.90 16 6 C -0.08 -0.84 4.95 -104.62 -0.52 -1.36 16 7 C -0.11 -1.19 9.11 -39.58 -0.36 -1.55 16 8 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 9 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 10 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 11 C -0.12 -1.16 9.70 -39.59 -0.38 -1.55 16 12 N -0.70 -9.76 4.48 -54.23 -0.24 -10.01 16 13 C 0.51 9.19 6.46 -11.59 -0.07 9.11 16 14 O -0.52 -10.12 13.62 5.49 0.07 -10.05 16 15 C 0.49 10.24 7.88 -11.59 -0.09 10.15 16 16 O -0.55 -12.04 16.48 5.51 0.09 -11.95 16 17 N -0.65 -14.39 5.27 -60.73 -0.32 -14.71 16 18 C 0.16 3.71 4.75 -4.04 -0.02 3.69 16 19 C 0.04 0.86 2.00 -155.65 -0.31 0.55 16 20 C -0.50 -12.83 8.27 -34.44 -0.28 -13.11 16 21 H 0.06 1.62 7.84 -52.49 -0.41 1.21 16 22 C 0.08 1.99 5.13 -17.82 -0.09 1.90 16 23 N -0.87 -23.12 10.75 55.43 0.60 -22.52 16 24 Si 0.89 20.53 29.55 -169.99 -5.02 15.50 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.19 -4.22 9.96 -26.69 -0.27 -4.48 16 29 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.06 1.05 5.64 -51.93 -0.29 0.75 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.12 1.21 7.58 -52.48 -0.40 0.82 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.41 5.32 7.32 -40.82 -0.30 5.02 16 43 H 0.41 9.33 7.41 -40.82 -0.30 9.03 16 44 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 45 H 0.11 2.98 6.04 -51.93 -0.31 2.66 16 46 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 48 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 49 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 50 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -28.75 410.03 -10.49 -39.24 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -7.86 Total: 17.26 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.98 Total: -8.95 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.03 Total: -47.24 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.17 Total: -22.00 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -28.75 -10.49 -39.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341221676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.300 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds