Wall clock time and date at job start Wed Apr 1 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46850 * 2 1 4 4 H 1.09003 * 109.47010 * 55.00785 * 3 2 1 5 5 C 1.53005 * 109.47033 * 175.00361 * 3 2 1 6 6 C 1.50697 * 109.47175 * 185.00401 * 5 3 2 7 7 C 1.38238 * 119.99993 * 269.72266 * 6 5 3 8 8 C 1.38229 * 120.00236 * 180.32089 * 7 6 5 9 9 C 1.38237 * 119.99895 * 359.95469 * 8 7 6 10 10 C 1.38238 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.38228 * 120.00288 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47347 * 295.00312 * 3 2 1 13 13 C 1.34773 * 120.00257 * 85.00031 * 12 3 2 14 14 O 1.21355 * 119.99644 * 359.97438 * 13 12 3 15 15 C 1.49447 * 120.00274 * 179.97438 * 13 12 3 16 16 O 1.21340 * 120.00051 * 355.00505 * 15 13 12 17 17 N 1.34780 * 119.99892 * 174.99994 * 15 13 12 18 18 C 1.46496 * 119.99749 * 185.78129 * 17 15 13 19 19 C 1.53005 * 109.46949 * 183.69436 * 18 17 15 20 20 C 1.50702 * 115.55112 * 306.41621 * 19 18 17 21 21 H 1.07995 * 119.99909 * 145.11153 * 20 19 18 22 22 C 1.37879 * 119.99587 * 325.11033 * 20 19 18 23 23 N 1.31513 * 120.00383 * 349.44141 * 22 20 19 24 24 Si 1.86797 * 119.99710 * 169.44532 * 22 20 19 25 25 H 1.48504 * 109.47085 * 59.99815 * 24 22 20 26 26 H 1.48506 * 109.47125 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47289 * 300.00015 * 24 22 20 28 28 C 1.53005 * 117.49940 * 160.74738 * 19 18 17 29 29 C 1.52999 * 117.49954 * 92.08838 * 19 18 17 30 30 H 1.09005 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46589 * 299.99200 * 1 2 3 32 32 H 1.09000 * 109.47076 * 60.00029 * 1 2 3 33 33 H 1.09004 * 109.46983 * 240.00748 * 2 1 3 34 34 H 1.08998 * 109.47433 * 120.00647 * 2 1 3 35 35 H 1.08993 * 109.47123 * 64.99783 * 5 3 2 36 36 H 1.09006 * 109.46635 * 305.00163 * 5 3 2 37 37 H 1.08006 * 119.99775 * 0.27777 * 7 6 5 38 38 H 1.08001 * 120.00217 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.00049 * 179.97438 * 9 8 7 40 40 H 1.08007 * 119.99272 * 179.97438 * 10 9 8 41 41 H 1.08000 * 120.00158 * 179.97438 * 11 10 9 42 42 H 0.97005 * 120.00222 * 264.99892 * 12 3 2 43 43 H 0.96998 * 119.99948 * 5.77653 * 17 15 13 44 44 H 1.08999 * 109.47352 * 303.68932 * 18 17 15 45 45 H 1.09000 * 109.47572 * 63.69615 * 18 17 15 46 46 H 0.96999 * 120.00436 * 185.02965 * 23 22 20 47 47 H 1.09004 * 117.49761 * 359.97438 * 28 19 18 48 48 H 1.08994 * 117.50040 * 145.01928 * 28 19 18 49 49 H 1.08997 * 117.50029 * 214.98166 * 29 19 18 50 50 H 1.09004 * 117.49870 * 359.96844 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1256 6 6 4.0569 2.8634 0.2493 7 6 4.3862 3.5821 -0.8848 8 6 4.8439 4.8814 -0.7711 9 6 4.9715 5.4625 0.4767 10 6 4.6419 4.7440 1.6108 11 6 4.1842 3.4446 1.4970 12 7 1.6523 2.0976 -1.2517 13 6 0.4350 2.6644 -1.3668 14 8 -0.3401 2.6319 -0.4337 15 6 0.0398 3.3332 -2.6436 16 8 0.8453 3.4458 -3.5441 17 7 -1.2113 3.8110 -2.7948 18 6 -1.6375 4.3519 -4.0878 19 6 -3.0579 4.9071 -3.9652 20 6 -4.0833 3.9525 -3.4098 21 1 -4.8812 4.3219 -2.7828 22 6 -4.0027 2.6076 -3.7024 23 7 -3.1659 2.1841 -4.6244 24 14 -5.0822 1.3868 -2.7893 25 1 -6.5109 1.7195 -3.0209 26 1 -4.8071 0.0146 -3.2859 27 1 -4.7874 1.4561 -1.3355 28 6 -3.5225 5.9009 -5.0318 29 6 -3.2095 6.3888 -3.6151 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0029 0.9837 -0.7597 36 1 3.8571 0.8800 1.0112 37 1 4.2864 3.1281 -1.8597 38 1 5.1015 5.4427 -1.6571 39 1 5.3295 6.4776 0.5656 40 1 4.7420 5.1979 2.5857 41 1 3.9271 2.8831 2.3830 42 1 2.2718 2.1233 -1.9978 43 1 -1.8295 3.7968 -2.0475 44 1 -0.9598 5.1509 -4.3887 45 1 -1.6204 3.5598 -4.8365 46 1 -3.1606 1.2489 -4.8819 47 1 -2.8161 6.1594 -5.8207 48 1 -4.5698 5.8644 -5.3316 49 1 -4.0509 6.6732 -2.9834 50 1 -2.2972 6.9679 -3.4717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341221676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:14 Heat of formation + Delta-G solvation = -48.296817 kcal Electronic energy + Delta-G solvation = -30764.234783 eV Core-core repulsion = 26756.031086 eV Total energy + Delta-G solvation = -4008.203698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73758 -40.33425 -39.61034 -38.44651 -37.40955 -34.95010 -34.16479 -33.39160 -33.22119 -31.72772 -29.38725 -28.43362 -27.48567 -25.47725 -24.50144 -23.46744 -22.96500 -22.10702 -21.65835 -21.26045 -21.12066 -19.46897 -18.07680 -17.93579 -17.63660 -17.13508 -16.78661 -16.68173 -16.20601 -16.05442 -15.83967 -15.49770 -15.38741 -14.93956 -14.72820 -14.40595 -14.29768 -14.24255 -14.08864 -13.65724 -13.57603 -13.41800 -13.22079 -12.89232 -12.82015 -12.73567 -12.65259 -12.46345 -12.33521 -12.20651 -12.06871 -11.81569 -11.78259 -11.70969 -11.43990 -11.10517 -10.69757 -10.53385 -10.17653 -10.15377 -9.81882 -9.77736 -9.55672 -8.06969 -6.20832 0.46635 0.50980 0.54411 1.39266 1.44384 1.48752 1.53055 2.31556 2.38933 2.80678 2.88452 3.05630 3.57414 3.67078 3.71889 3.90582 3.98256 4.16436 4.19220 4.21156 4.22472 4.32753 4.42677 4.48881 4.56110 4.65222 4.67640 4.69928 4.74887 4.82296 4.87936 4.95621 4.99648 5.03054 5.06531 5.16208 5.19323 5.20950 5.25676 5.38286 5.45226 5.47218 5.56248 5.58671 5.60427 5.66186 5.73365 5.87918 6.11050 6.16574 6.34406 6.56936 6.79915 6.91860 7.14718 7.41936 8.87932 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003394 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.967918 B = 8247.743646 C = 9745.823441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.148 3.852 4 H 0.079 0.921 5 C -0.079 4.079 6 C -0.092 4.092 7 C -0.127 4.127 8 C -0.135 4.135 9 C -0.136 4.136 10 C -0.130 4.130 11 C -0.126 4.126 12 N -0.681 5.681 13 C 0.513 3.487 14 O -0.536 6.536 15 C 0.488 3.512 16 O -0.564 6.564 17 N -0.656 5.656 18 C 0.171 3.829 19 C 0.007 3.993 20 C -0.510 4.510 21 H 0.056 0.944 22 C 0.043 3.957 23 N -0.891 5.891 24 Si 0.937 3.063 25 H -0.271 1.271 26 H -0.288 1.288 27 H -0.274 1.274 28 C -0.190 4.190 29 C -0.189 4.189 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.413 0.587 43 H 0.409 0.591 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.260 0.740 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.468 -1.675 11.603 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.045 3.955 4 H 0.097 0.903 5 C -0.117 4.117 6 C -0.092 4.092 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.144 4.144 12 N -0.335 5.335 13 C 0.294 3.706 14 O -0.413 6.413 15 C 0.269 3.731 16 O -0.445 6.445 17 N -0.304 5.304 18 C 0.048 3.952 19 C 0.006 3.994 20 C -0.547 4.547 21 H 0.075 0.925 22 C -0.159 4.159 23 N -0.527 5.527 24 Si 0.764 3.236 25 H -0.197 1.197 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.229 4.229 29 C -0.226 4.226 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.250 0.750 43 H 0.245 0.755 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.564 -1.825 11.583 21.118 hybrid contribution -1.048 -0.347 -0.153 1.114 sum 16.516 -2.171 11.429 20.203 Atomic orbital electron populations 1.21802 0.97114 1.00653 1.01074 1.21973 0.94891 0.95283 1.04305 1.21315 0.95205 0.93425 0.85566 0.90311 1.20947 0.91703 0.93011 1.06001 1.20009 0.99057 0.96799 0.93328 1.21269 0.99500 0.95132 0.98625 1.21404 0.99856 0.95677 0.98325 1.21430 1.00545 1.00697 0.92726 1.21449 0.99101 0.94871 0.99352 1.21350 0.99640 0.95835 0.97551 1.45791 1.14657 1.55078 1.17928 1.19985 0.83443 0.79679 0.87526 1.90737 1.51513 1.58857 1.40239 1.20407 0.83485 0.80797 0.88451 1.90640 1.51250 1.59136 1.43482 1.45668 1.11910 1.57433 1.15379 1.20892 0.92655 0.97173 0.84477 1.19210 0.92852 0.87810 0.99529 1.20660 1.11326 0.91538 1.31201 0.92538 1.25448 0.96045 0.99395 0.95013 1.69943 1.37176 1.16116 1.29491 0.85921 0.79693 0.78443 0.79556 1.19660 1.21336 1.19916 1.22931 1.00663 1.07539 0.91718 1.22972 1.01957 0.99157 0.98545 0.92557 0.93181 0.95793 0.90740 0.87701 0.88727 0.86305 0.85882 0.85507 0.84798 0.84366 0.84271 0.75000 0.75520 0.94527 0.89810 0.93010 0.90189 0.90465 0.89929 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 8.51 71.98 0.61 -3.48 16 2 C -0.13 -2.40 5.61 30.60 0.17 -2.23 16 3 C 0.15 3.05 2.24 44.99 0.10 3.15 16 4 H 0.08 1.90 7.58 -2.39 -0.02 1.89 16 5 C -0.08 -1.11 4.89 29.85 0.15 -0.97 16 6 C -0.09 -1.70 4.95 -19.87 -0.10 -1.80 16 7 C -0.13 -2.64 9.11 22.27 0.20 -2.44 16 8 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 9 C -0.14 -2.59 10.05 22.27 0.22 -2.37 16 10 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 11 C -0.13 -2.22 9.70 22.27 0.22 -2.01 16 12 N -0.68 -18.45 4.48 -443.86 -1.99 -20.43 16 13 C 0.51 18.60 6.46 87.27 0.56 19.17 16 14 O -0.54 -21.31 13.62 -3.26 -0.04 -21.36 16 15 C 0.49 20.61 7.88 87.27 0.69 21.30 16 16 O -0.56 -25.02 16.48 -3.22 -0.05 -25.08 16 17 N -0.66 -29.62 5.27 -464.42 -2.45 -32.06 16 18 C 0.17 8.12 4.75 86.38 0.41 8.53 16 19 C 0.01 0.31 2.00 -52.92 -0.11 0.21 16 20 C -0.51 -26.36 8.27 25.60 0.21 -26.14 16 21 H 0.06 2.92 7.84 -2.91 -0.02 2.90 16 22 C 0.04 2.25 5.13 84.66 0.43 2.69 16 23 N -0.89 -48.19 10.75 21.45 0.23 -47.96 16 24 Si 0.94 42.49 29.55 68.60 2.03 44.52 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 28 C -0.19 -8.13 9.96 30.62 0.30 -7.82 16 29 C -0.19 -7.68 9.92 30.62 0.30 -7.38 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.45 7.85 -2.39 -0.02 1.44 16 32 H 0.02 0.81 5.64 -2.39 -0.01 0.80 16 33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 36 H 0.12 1.05 8.09 -2.38 -0.02 1.03 16 37 H 0.12 2.38 7.58 -2.91 -0.02 2.36 16 38 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.41 10.40 7.32 -92.70 -0.68 9.72 16 43 H 0.41 18.95 7.41 -92.71 -0.69 18.26 16 44 H 0.04 1.67 8.06 -2.39 -0.02 1.65 16 45 H 0.08 4.51 6.04 -2.39 -0.01 4.49 16 46 H 0.26 13.80 8.32 -92.71 -0.77 13.02 16 47 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 48 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 50 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -62.62 410.03 2.15 -60.48 By element: Atomic # 1 Polarization: 48.57 SS G_CDS: -0.41 Total: 48.16 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 4.83 Total: -6.27 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.20 Total: -100.45 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.10 Total: -46.43 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -62.62 2.15 -60.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341221676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.179 kcal (2) G-P(sol) polarization free energy of solvation -62.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds